BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78400.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909468 jgi|Araly1|909468|Al_scaffold_0002_2549 1685 0.0
> Ahg909468 jgi|Araly1|909468|Al_scaffold_0002_2549
Length=1215
Score = 1685 bits (912), Expect = 0.0
Identities = 1119/1220 (92%), Gaps = 10/1220 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTCCACTATCTCCGGTTTT-AGCTTAATTTTGTTCATAGCTGCCGTCGCTAGTAG 59
|||||||||| |||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTCCATTATCAGCGGTTTTAAG-TTAATTTTGTTCATAGCTGCCGTCGCTAGTAT 59
Query 60 CATTTCAGCCGCCCCTTCAGCCGCTCTCGTCGGAAGAAAAGTCTTCGATGTTCGAAGCTA 119
|||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 60 TATTTCAGCCGCCACTTCAGCCACTCTCGCCGGAAGAAAGGTCTTCGATGTTCGAAGCTA 119
Query 120 TGGTGCTCGTGGTGACGGCAAAACAGACAATACTATGGCATTTACAAAGGCGTGGAAAGA 179
||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||
Sbjct 120 TGGTGCTCGTGGTGACGGCAAAACAGACAATGCAATTGCGTTTACAAAGGCGTGGAAAGA 179
Query 180 CGCTTGCCAATGGAAAGGATTA-CCTAGAGTGTATATACCATTTGGAACCTTCTACCTCG 238
|| || |||||||||||| || ||||||||||| ||||||||||||| ||||||||||
Sbjct 180 AGCGTGTCAATGGAAAGGA-TACCCTAGAGTGTACGTACCATTTGGAACTTTCTACCTCG 238
Query 239 GTGCTGTAGCCTTCACGGGACCATGTAAAAGTCGGATTAGTTTCATCATCAAAGGAACTT 298
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTGCCGTAACCTTCACGGGACCATGTAAAAGTCGGATTAGTTTCATCATCAAAGGAACTT 298
Query 299 TGTTAGCTCCAAAAGATCCTAACGCCATCAAACAAGACAGCTGGATTATTTTTAGGTACG 358
||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
Sbjct 299 TGTTAGCTCCAAAAGATCCTAACGCCATCAAACAAGACACCTGGATCATTTTCAGGTATG 358
Query 359 TTGACTATCTCACGGTTTCAGGCGGCGGCATCCTTGACGGACAAGGAAGCTACTCTTGGC 418
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 359 TTGACTATCTCACGGTCTCAGGCGGCGGTATTCTTGACGGACAAGGAAGCTACTCTTGGC 418
Query 419 CACTCAACAATTGCCGCCAAACCCATAATTGCCGGGCTCTACCGATGAACATGGGGTTCC 478
||||||||||||||| | |||||| | |||||||||||||||| ||||||||||||||||
Sbjct 419 CACTCAACAATTGCCACAAAACCCTTTATTGCCGGGCTCTACCTATGAACATGGGGTTCC 478
Query 479 AGTTCGTGAGATTCTCGAGACTCACGC-GCATCAAATCGATCAATAGCAAAATGGGCCAC 537
| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 479 AATTCGTGAGATTCTCGAGACTCA-GCCGCATCAAATCGATCAATAGCAAAATGGGTCAC 537
Query 538 CTCAACTTCTTCTCAGTCCAACACTTTGATATCACACGCGTCAACATTAAGGCTCCCGGA 597
||||||||||| |||||||| |||| || ||||||||||||| |||| ||||||||||
Sbjct 538 TTCAACTTCTTCGCAGTCCAATACTTCGACATCACACGCGTCAGGATTATGGCTCCCGGA 597
Query 598 GATAGCCCTAACACTGATGGAATCAAGATAGGTTCATCAAACCACATGAAGATCCACCAC 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATAGCCCTAACACTGACGGAATCAAGATAGGTTCATCAAACCACATGAAGATCCACCAC 657
Query 658 GTTGACATAGCAACTGGCGACGACTGCATCGCTATCTTGTCGGGAACCTTCAATTTGGAT 717
|||||||||| ||| ||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 658 GTTGACATAGGAACCGGCGACGACTGCATCGCGATCTTGTCAGGAACCACCAATTTGGAT 717
Query 718 ATCAACAAAGTCAACTGTGGACCGGGCCATGGAATCAGCGTTGGAAGTCTTGGGAAGTTT 777
||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATCTACAATGTGAAGTGTGGACCGGGCCATGGAATCAGCGTTGGAAGTCTTGGGAAGTTT 777
Query 778 AAAGGTGAGAAGAGCGTTCAGGGATTAATTGTTAGGAATTCAATCTTTAATGGTACGAGT 837
|||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 778 AAAGGTGAGAAGAGCGTTCAGGGATTAACTGTTAGGGATTCAATCTTTAACGGTACGAGT 837
Query 838 AATGGAGTACGAATCAAGACATGGCCTTCGCCGGGTGAACCGAACTTAGTTTCGAATTTT 897
|||||||||||||||||||||||| ||||| | ||| | ||||||||||||| |||||
Sbjct 838 AATGGAGTACGAATCAAGACATGGGCTTCGTCAGGTTCAGCGAACTTAGTTTCCAATTTC 897
Query 898 CTTTTCAAGAATCTCCAGATGATTGATGTCCAAAGCCCAATCAACATAGATCAACGATAC 957
|||| |||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 898 CTTTACAAGAATCTCCAAATGATTAATGTCGAAAACCCAATCAACATAGATCAACGATAC 957
Query 958 TGTCCAAATCCACCGTGCAGCTTTCAGTCTTTTTCAAAGATTCAGATAAGAGACGTGAAG 1017
||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 958 TGTCCAAATCCACCGTGCAGCTTAAAGTCTTTTTCACAGATTCAGATAAAAGACGTGAAG 1017
Query 1018 TTCCAA-AACATTTGGGGAACGTCGACGGCCAAGGAGGCAGTGAAGTTGCAATGTAGCAA 1076
||| || ||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct 1018 TTC-AATAACATTTGGGGAACGTCGACGAACAAAGTTGCCGTGAAGTTGCAATGTAGCAA 1076
Query 1077 GAATGTTCCTTGCAAAAACGTTCAGCTCTTCAACATTAACATAGTGCACCGTGGGA-GAG 1135
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | | |
Sbjct 1077 GAATGTTCCTTGCAAAAACGTTGAGCTCTTCAACGTTAACTTAGTGCACCGTGG-ACGCG 1135
Query 1136 ACGGTCCAGCAACCTCTGTGTGTGAGAATGTTGGCGGTTGGATAGGTGGCAAGATTTCTC 1195
|||||||||| | |||| ||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1136 ACGGTCCAGCCATCTCTTTGTGTGAGAATGTTGCCGGTTGGACACGTGGCAAGATTTCTC 1195
Query 1196 CTCCGTCTTGCATCCGGTGA 1215
|||||||||||||||| |||
Sbjct 1196 CTCCGTCTTGCATCCGTTGA 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5