BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78410.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477006 jgi|Araly1|477006|fgenesh2_kg.2__2136__AT1G78410.1 695 0.0
> Ahg477006 jgi|Araly1|477006|fgenesh2_kg.2__2136__AT1G78410.1
Length=621
Score = 695 bits (376), Expect = 0.0
Identities = 508/566 (90%), Gaps = 31/566 (5%)
Strand=Plus/Plus
Query 1 AAATCTACAAAACATCTGAACACCCAAAGACACAGGAAGAGAGCTAAAGCTGATATATAC 60
|||| |||||||||||| || ||||||||||||||| | ||||||||| ||| |||||||
Sbjct 1 AAATATACAAAACATCTAAATACCCAAAGACACAGG-A-AGAGCTAAA-CTGCTATATAC 57
Query 61 TAAGTACTAAGATCATTTGATCAACCTAATCATCAACACCACAAAATTTTCTTTTCTTGT 120
| | |||||||||| || || | | |||||||||||||| ||||||||||||| |||
Sbjct 58 T-A--ACTAAGATCA-TT--TC-A--TCATCATCAACACCAC-AAATTTTCTTTTC-TGT 106
Query 121 TTCTCT-AATCG-ATTAATTTAG-TAATAATGTCTGGAAGAGGGAAAGTGAAATCGGAGC 177
|||| | ||||| ||| |||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 107 TTCT-TAAATCGAATT-ATTT-GATAATAATGTCTGGAAGAGGGAGAGTGAAATCGGAGC 163
Query 178 CGATGAAGGTTGTGTTCATTAACACACAGTATGTTGAGACAGATGCTCGTAGCTTCAAGA 237
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 CGATGAAAGTTGTATTCATTAACACACAGTATGTTGAGACAGATGCTCGTAGCTTCAAGA 223
Query 238 CCGTTGTTCAAGAACTCACCGGTAAGAACGCCATCGTCGCCGCCGGTCCTTTTGATTCGC 297
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 224 CCGTTGTTCAAGAACTCACCGGTAAGGACGCCATCGTCGCCGCCGGTCCTTTTGATTCCC 283
Query 298 CCTCTGCTTTCGACGGCCGTTGTTACGATGGCGGTAGTAAAATCGGTGAAGATACCAGAC 357
|||||||| |||||||||||| || | ||| ||||||||||||||||||||||| ||||
Sbjct 284 CCTCTGCTACCGACGGCCGTTGGTATGGTGGGGGTAGTAAAATCGGTGAAGATACTAGAC 343
Query 358 AGCTCCACGGCGGTGGCGGCGGAGGAGGACGA--A----TGGGGACGACGACGGAGTTCG 411
||||| ||||||||||||||||||||||| || | ||||||||| ||| |||||||
Sbjct 344 AGCTCTACGGCGGTGGCGGCGGAGGAGGAGGAGGACGAGTGGGGACGATGACCGAGTTCG 403
Query 412 ATAGATTATTCAAAGAGATGCCTCACATGGAAGAATTGTATAAACTATGGTCAGAATATT 471
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 404 ATAGATTATTCAAAGAGATGCCTCCCTTGGAAGAATTGTATAAACTATGGTCAGAAAATT 463
Query 472 GAGTCATTAATAATTTCTGTGC-AATGATTTTTAAATCATTCGTTTTCTTCCAAAATCTT 530
||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 464 GAGTCATTAATAATTTCTGTGTTAATGATTTT-AAATCATTCGTTTTCTTCGAAAATCTT 522
Query 531 TTCTTTTTTATCTAATGAGATAATGT 556
| ||||| ||||| |||||||||||
Sbjct 523 T-CTTTT--ATCTACTGAGATAATGT 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5