BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78420.1 Length=1923 Score E Sequences producing significant alignments: (Bits) Value Ahg927252 jgi|Araly1|927252|scaffold_202813.1 1910 0.0 Ahg471915 jgi|Araly1|471915|fgenesh2_kg.1__1869__AT1G17145.1 399 3e-110 > Ahg927252 jgi|Araly1|927252|scaffold_202813.1 Length=1261 Score = 1910 bits (1034), Expect = 0.0 Identities = 1188/1261 (94%), Gaps = 16/1261 (1%) Strand=Plus/Plus Query 485 GAAAGGTTAAAACTTT-GTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 543 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAAGGTTAAAACTTTGGTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 60 Query 544 AAAGGTATACAAAGCCTCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGCTCA 603 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 AAAGGTATACAAAGCCACAAGGTTTGTATGTGAATAAAGATGTTGACGTTAAAAAGCTCA 120 Query 604 GAAAACTGATTGTGGAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAAGCTGTC 663 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 121 GAAAACTGATTGTAGAGTCTAAGCTTGCTCCTTGCTATCCCGGAGACGATGAAAGCTGCC 180 Query 664 ATGATCTTGAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGAT 723 | |||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||| Sbjct 181 ACGATCTTGAAGAATGCCCCATTTGTTTCCTGTATTATCCTAGCCTCAATAGATCAAGAT 240 Query 724 GTTGCATGAAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 783 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTTGCATGAAAAGCATCTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 300 Query 784 GGCCTACTCAGTGCCCTTTTTGTAAAACTCCCAACTATGCTGTCGAGTATCGTGGAGTCA 843 |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || | Sbjct 301 GGCCTACTCAGTGCCCATTTTGTAAAACTCCCAATTATGCTGTCGAGTATCGTGGCGTAA 360 Query 844 AGTCAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 903 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGACAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 420 Query 904 TAAGGATGAGGCAGAAAGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 963 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TAAGGATGAGGCAGAAGGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 480 Query 964 CATGTTCCTCTAGCACAAGCGCAATGACTGGCGAGATGGAATATGGTTCAACTTCAGCCA 1023 |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 481 CATGGTCCTCTAGCACAAGTGCAATGACTGGCGAGATGGAATATGGTTCAGCTTCAGCCA 540 Query 1024 TATCTTATAACTCCCTCATGGATGACGGGGAAATTGCTCCATCGCAGAACGCATCTGTTG 1083 |||||||||| |||| |||||| ||||| |||||||||||||| |||||| || | || | Sbjct 541 TATCTTATAATTCCCCCATGGAAGACGGCGAAATTGCTCCATCACAGAACACAGCAGTGG 600 Query 1084 TTAGACAACATTCCCGCCCGCGAGGAAACAGGGAGGATGAGGTTGACGTTGACCTTGAGG 1143 ||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| | Sbjct 601 TTAGACAGCATTCCCGTCCTCGAGGAAACAGGGATGATGAGGTTGACGTTGACCTTGAAG 660 Query 1144 AATTGATGGTCATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 1203 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AATTGATGATTATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 720 Query 1204 CAGCTTCAGGGGAAATTACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 1263 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CAGCTTCTGGGGAAATGACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 780 Query 1264 CTTCACCACCACGAGTGACTCCAATCGTAGAACCAGCAACACCGTCTTCATCATCTGGTG 1323 |||||||||||||| || |||||||||| ||||||||||||| ||| |||||| |||||| Sbjct 781 CTTCACCACCACGAATGGCTCCAATCGTTGAACCAGCAACACTGTCCTCATCAGCTGGTG 840 Query 1324 GGCTTTCTTGTGCAATCTCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAGTC 1383 | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 841 GACTTGCTTGTGCAATCGCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAATC 900 Query 1384 ACAATCATAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCCGGAAATTGTGACA 1443 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 901 ACAATCACAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCTGGAAATTGTGACA 960 Query 1444 GTTACTACGACATAGAACAAGAGGTAGATGGCATAGACAACCATCATCATCATCGTCATC 1503 |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 961 GTTACTACGACATAGAACAAGAGGTAGATGACATAGACAACCATCATCATCGTCATCATC 1020 Query 1504 ATTAC------------GAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1551 ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ATTACCATAACAACACCGAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1080 Query 1552 ACATGACAGGCGAGGGCTTCCACAACTTTC--C-TCCTCCTCCACCTCTGGTCATTGTTC 1608 ||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct 1081 ACATGACCGGCGAGAGCTTCCACAACTTTCTTCCTCCTCCTCCACCTCTGGTCATTGTTC 1140 Query 1609 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1200 Query 1669 CCACGACGACATGTGCACCAACTGAAGTTACCTGGCAATAAATAGGATAATAATGGAAAC 1728 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1201 CCACGACGACAAGTGCACCAACTGAAGTTACTTGGCAATAAATAGGATAATAATGGAAAC 1260 Query 1729 T 1729 | Sbjct 1261 T 1261 > Ahg471915 jgi|Araly1|471915|fgenesh2_kg.1__1869__AT1G17145.1 Length=1375 Score = 399 bits (216), Expect = 3e-110 Identities = 402/489 (82%), Gaps = 23/489 (5%) Strand=Plus/Plus Query 504 ATGGGTAATAAGTTGGGAAGGAAGAGGCAAG-TGGTGGAAGAAAGGTATACAAAG-C-C- 559 |||||||||||| ||||||||||||| | || | ||||| ||||| || || ||| | | Sbjct 179 ATGGGTAATAAGCTGGGAAGGAAGAGAC-AGATTGTGGACGAAAGATACACTAAGCCACA 237 Query 560 TCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGC-TCAGAAAACTGAT-TGTG 617 |||||||| || ||| |||||||||||| ||||||||| | || ||||| || | | Sbjct 238 ACAAGGTTTATACATGAGCAAAGATGTCGACATTAAAAAGCTTAAG-AAACTCATCT-TA 295 Query 618 GAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAA---GCT---GTCATGATCTT 671 || ||||||||||||||||| |||||||| || |||| || |||||||||| Sbjct 296 GACTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCTCCTCCCATCATGATCTT 355 Query 672 GAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGATGTTGCATG 731 || |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 356 GAGGAATGTCCTATTTGCTTTCTGTACTATCCGAGCCTTAATAGGTCAAGATGTTGTATG 415 Query 732 AAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTCGGCCTACT 791 ||||||||||||||||| || ||| ||| ||||||| |||||||||||||| |||||| Sbjct 416 AAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTCAACCTACT 475 Query 792 CAGTGCCCTTTTTGTAAAAC-TCCCAACTATGCTGTCGAGTATCGTGGAGTCAAGTC-AA 849 || ||||| ||||| ||||| | |||| |||||||||||||||||||||| || | || Sbjct 476 CAATGCCCGTTTTGCAAAACAT-CCAATTATGCTGTCGAGTATCGTGGAGGGAAAACTAA 534 Query 850 AGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAATAAGGA 909 | ||||| ||| ||||||||||| |||||||||| | || ||||||||||||||||||| Sbjct 535 A-GAGGAGAAGAGCATTGAACAAATTGAAGAGCAGCAAGTTATAGAAGCCAAAATAAGGA 593 Query 910 TGAGGCAGAAAGAAAT-GCAGGATGATGAAGAGAA-AATGCAGAAACGTCTTGAATCATG 967 |||||||||| ||| | | || | |||||||| || ||||||||||||||| ||||| | Sbjct 594 TGAGGCAGAAGGAAGTTGAAGAA-GATGAAGA-AAGAATGCAGAAACGTCTGGAATCGTT 651 Query 968 TTCCTCTAG 976 ||| ||||| Sbjct 652 TTCTTCTAG 660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72257194765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5