BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78420.1
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927252 jgi|Araly1|927252|scaffold_202813.1 1910 0.0
Ahg471915 jgi|Araly1|471915|fgenesh2_kg.1__1869__AT1G17145.1 399 3e-110
> Ahg927252 jgi|Araly1|927252|scaffold_202813.1
Length=1261
Score = 1910 bits (1034), Expect = 0.0
Identities = 1188/1261 (94%), Gaps = 16/1261 (1%)
Strand=Plus/Plus
Query 485 GAAAGGTTAAAACTTT-GTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 543
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAGGTTAAAACTTTGGTGATGGGTAATAAGTTGGGAAGGAAGAGGCAAGTGGTGGAAG 60
Query 544 AAAGGTATACAAAGCCTCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGCTCA 603
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 AAAGGTATACAAAGCCACAAGGTTTGTATGTGAATAAAGATGTTGACGTTAAAAAGCTCA 120
Query 604 GAAAACTGATTGTGGAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAAGCTGTC 663
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 121 GAAAACTGATTGTAGAGTCTAAGCTTGCTCCTTGCTATCCCGGAGACGATGAAAGCTGCC 180
Query 664 ATGATCTTGAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGAT 723
| |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||
Sbjct 181 ACGATCTTGAAGAATGCCCCATTTGTTTCCTGTATTATCCTAGCCTCAATAGATCAAGAT 240
Query 724 GTTGCATGAAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 783
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGCATGAAAAGCATCTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTC 300
Query 784 GGCCTACTCAGTGCCCTTTTTGTAAAACTCCCAACTATGCTGTCGAGTATCGTGGAGTCA 843
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |
Sbjct 301 GGCCTACTCAGTGCCCATTTTGTAAAACTCCCAATTATGCTGTCGAGTATCGTGGCGTAA 360
Query 844 AGTCAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 903
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACAAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAA 420
Query 904 TAAGGATGAGGCAGAAAGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 963
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAAGGATGAGGCAGAAGGAAATGCAGGATGATGAAGAGAAAATGCAGAAACGTCTTGAAT 480
Query 964 CATGTTCCTCTAGCACAAGCGCAATGACTGGCGAGATGGAATATGGTTCAACTTCAGCCA 1023
|||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CATGGTCCTCTAGCACAAGTGCAATGACTGGCGAGATGGAATATGGTTCAGCTTCAGCCA 540
Query 1024 TATCTTATAACTCCCTCATGGATGACGGGGAAATTGCTCCATCGCAGAACGCATCTGTTG 1083
|||||||||| |||| |||||| ||||| |||||||||||||| |||||| || | || |
Sbjct 541 TATCTTATAATTCCCCCATGGAAGACGGCGAAATTGCTCCATCACAGAACACAGCAGTGG 600
Query 1084 TTAGACAACATTCCCGCCCGCGAGGAAACAGGGAGGATGAGGTTGACGTTGACCTTGAGG 1143
||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 601 TTAGACAGCATTCCCGTCCTCGAGGAAACAGGGATGATGAGGTTGACGTTGACCTTGAAG 660
Query 1144 AATTGATGGTCATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 1203
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATTGATGATTATGGAAGCAATATGGCTCTCTGTTCAGGAAACAGGGACGCAGAGAAATT 720
Query 1204 CAGCTTCAGGGGAAATTACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 1263
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGCTTCTGGGGAAATGACCTCTTCTAGGCAGTATGTAACAGATAATCATAGTTATGTTT 780
Query 1264 CTTCACCACCACGAGTGACTCCAATCGTAGAACCAGCAACACCGTCTTCATCATCTGGTG 1323
|||||||||||||| || |||||||||| ||||||||||||| ||| |||||| ||||||
Sbjct 781 CTTCACCACCACGAATGGCTCCAATCGTTGAACCAGCAACACTGTCCTCATCAGCTGGTG 840
Query 1324 GGCTTTCTTGTGCAATCTCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAGTC 1383
| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 841 GACTTGCTTGTGCAATCGCCGCACTTGCTGAACGCCAAATGGTTGGCGAATCCTCCAATC 900
Query 1384 ACAATCATAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCCGGAAATTGTGACA 1443
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 ACAATCACAATCACAATGTCAACGTTTCTTCATACAGTATGCTTCCTGGAAATTGTGACA 960
Query 1444 GTTACTACGACATAGAACAAGAGGTAGATGGCATAGACAACCATCATCATCATCGTCATC 1503
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 961 GTTACTACGACATAGAACAAGAGGTAGATGACATAGACAACCATCATCATCGTCATCATC 1020
Query 1504 ATTAC------------GAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1551
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTACCATAACAACACCGAGATGGGAGAAACAGGAAGCAGCAACAGCTATGTAAGTTCTT 1080
Query 1552 ACATGACAGGCGAGGGCTTCCACAACTTTC--C-TCCTCCTCCACCTCTGGTCATTGTTC 1608
||||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1081 ACATGACCGGCGAGAGCTTCCACAACTTTCTTCCTCCTCCTCCACCTCTGGTCATTGTTC 1140
Query 1609 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CAGAGAGTTTTGAGGAACAGATGATGATGGCTATGGCTGTGTCTATGGCAGAGGTTCATG 1200
Query 1669 CCACGACGACATGTGCACCAACTGAAGTTACCTGGCAATAAATAGGATAATAATGGAAAC 1728
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 CCACGACGACAAGTGCACCAACTGAAGTTACTTGGCAATAAATAGGATAATAATGGAAAC 1260
Query 1729 T 1729
|
Sbjct 1261 T 1261
> Ahg471915 jgi|Araly1|471915|fgenesh2_kg.1__1869__AT1G17145.1
Length=1375
Score = 399 bits (216), Expect = 3e-110
Identities = 402/489 (82%), Gaps = 23/489 (5%)
Strand=Plus/Plus
Query 504 ATGGGTAATAAGTTGGGAAGGAAGAGGCAAG-TGGTGGAAGAAAGGTATACAAAG-C-C- 559
|||||||||||| ||||||||||||| | || | ||||| ||||| || || ||| | |
Sbjct 179 ATGGGTAATAAGCTGGGAAGGAAGAGAC-AGATTGTGGACGAAAGATACACTAAGCCACA 237
Query 560 TCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGC-TCAGAAAACTGAT-TGTG 617
|||||||| || ||| |||||||||||| ||||||||| | || ||||| || | |
Sbjct 238 ACAAGGTTTATACATGAGCAAAGATGTCGACATTAAAAAGCTTAAG-AAACTCATCT-TA 295
Query 618 GAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAA---GCT---GTCATGATCTT 671
|| ||||||||||||||||| |||||||| || |||| || ||||||||||
Sbjct 296 GACTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCTCCTCCCATCATGATCTT 355
Query 672 GAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGATGTTGCATG 731
|| |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 356 GAGGAATGTCCTATTTGCTTTCTGTACTATCCGAGCCTTAATAGGTCAAGATGTTGTATG 415
Query 732 AAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTCGGCCTACT 791
||||||||||||||||| || ||| ||| ||||||| |||||||||||||| ||||||
Sbjct 416 AAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTCAACCTACT 475
Query 792 CAGTGCCCTTTTTGTAAAAC-TCCCAACTATGCTGTCGAGTATCGTGGAGTCAAGTC-AA 849
|| ||||| ||||| ||||| | |||| |||||||||||||||||||||| || | ||
Sbjct 476 CAATGCCCGTTTTGCAAAACAT-CCAATTATGCTGTCGAGTATCGTGGAGGGAAAACTAA 534
Query 850 AGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAATAAGGA 909
| ||||| ||| ||||||||||| |||||||||| | || |||||||||||||||||||
Sbjct 535 A-GAGGAGAAGAGCATTGAACAAATTGAAGAGCAGCAAGTTATAGAAGCCAAAATAAGGA 593
Query 910 TGAGGCAGAAAGAAAT-GCAGGATGATGAAGAGAA-AATGCAGAAACGTCTTGAATCATG 967
|||||||||| ||| | | || | |||||||| || ||||||||||||||| ||||| |
Sbjct 594 TGAGGCAGAAGGAAGTTGAAGAA-GATGAAGA-AAGAATGCAGAAACGTCTGGAATCGTT 651
Query 968 TTCCTCTAG 976
||| |||||
Sbjct 652 TTCTTCTAG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72257194765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5