BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78430.1 Length=1500 Score E Sequences producing significant alignments: (Bits) Value Ahg927253 jgi|Araly1|927253|scaffold_202814.1 1531 0.0 > Ahg927253 jgi|Araly1|927253|scaffold_202814.1 Length=1024 Score = 1531 bits (829), Expect = 0.0 Identities = 954/1015 (94%), Gaps = 6/1015 (1%) Strand=Plus/Plus Query 290 GCAACTTTGCATAAATCAGAATGCCAAAACCAAGTATTAGAGGTTCAGAGTTGCCTCAGA 349 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCAACTTTGCATAAATCAAAATGCCAAAACCAAGTATTAGAGGTTCAGAGTTGCCTCAGA 60 Query 350 GGCAATCTCCTAGGCTAAGGACATCACTGTTGTCCACTTCCTCTGATCCGCATCACCTCA 409 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | Sbjct 61 GGCAATCTCCTAGGCTAAGGACATCACTGGTGTCCACTTCCTCTGATCGGCATCACCTTA 120 Query 410 GCCGTCCGATTACAGACCGGAGTCCAAAGCTCGGCCTTGACCGTAGATCTCCAAGGAGTG 469 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 121 GCCGTCCGATTACAGACCGGAGTCCAAAGCTAGGCCTTGACCGTAGATCTCCGAGGAGTG 180 Query 470 GTGGGCCTCATACAGATCCGCTGAGTCAGAAGAAGCTTGGAAGTCGCATCTCTGGCTTGG 529 ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 181 GTGGGCCTCATACGGATCCGCTGACTCAGAAGAAGCTTGGAAGTCGTATCTCTGGCTTGG 240 Query 530 AGTCACAGCTAGGACAAGCCCAAGAAGAGTTGAGATTGCTCAAACAGCAGTTGGCTAAAG 589 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 241 AGTCACAGCTAGGACAAGCCCAGGAAGAGTTGAGTTTGCTCAAACAGCAGTTGGCTAAAG 300 Query 590 CCGAGGCTGCCAAGAAACGTGCTCAAGAAGAGCTTCATAGGAAGAAATCCAAGAAACCGA 649 | |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || Sbjct 301 CGGAGGCTGCCAAGAAACGTGCCCAAGAAGAGCTTCTTAGGAAGAAATCCAAGAAATCGG 360 Query 650 ACACTCCTGCTCCGGAGAGAGATGACATTCCTGGAGATGGACATCAAGAGACAGATGTGT 709 || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 361 ACCCTCCTGCTCAGGAGAGAGATGACATTCCTGGAGATGGACATCAAGAGACCGATGTGT 420 Query 710 TCGAGGTTCTTGATGAGAAAGCAAAAGAAAGTGAGAAGACGAAGAATGATGAATTGGCTT 769 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 421 TCGAGGTTCTTGTTGAGAAAGAAAAAGAAAGTGAGAAGACGAAGAATGATGAATTGGCTT 480 Query 770 CTAAGGAAGACCAAATCAATGTATTGAAAGCTAGATTATATGACTTGGAGAAAGAAAGGG 829 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 481 CTAAGGAAGACCAAATCAATGTATTGAAAGCTAGACTATATGACTTGGAGAAAGAAAGGG 540 Query 830 TATCACTTAGCGAGGAGAATGAGACCTTGAAGGATCAGTTGAAGAAGACGGATACGGAAA 889 |||||||| || | ||||| ||| ||||||| |||||||||||||||||||| |||||| Sbjct 541 TATCACTTGGCCAAGAGAACGAGGGCTTGAAGAATCAGTTGAAGAAGACGGATTCGGAAA 600 Query 890 TGTCCTGCGCAAAGGCGAAAGAGGATGAGATAGCTTCAAAGGTGAGTCAGATTGGGGAAG 949 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 601 TGTCCAGCGCAAAGGCGAAAGAAGATGAGATAGCTTCAAAGGTGAGTCAGATTGGGGAAG 660 Query 950 AATTGGAAGAAAGCAATGAGACCACAGCGAAGCTAAAGAAGAAGCTCGAATCCGTGGAAG 1009 || | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 661 AACTAGAAGAAAGCAATGAGACCACAGCGAAGCTAAAGAAAAAGCTCGAATCCGTGGAAG 720 Query 1010 AAGCAAAAGAGACTCTAGAAGCTGAGATGAAGAAGCTGAAGGTCCAAACAGAGCAGTGGA 1069 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 721 AAGCAAAAGAGAGTCTAGAAGCTGAGATGAAGAAGCTGAAGGTCCAAACCGAGCAGTGGA 780 Query 1070 GGAAAGCAGCAGATGCTGCAGCTGCGGTTTTATCTGGAGGGGTTGAGATGAATGGTCGGT 1129 |||||||||| ||||| |||||||| |||||| |||||||||| ||||||||||| |||| Sbjct 781 GGAAAGCAGCGGATGCAGCAGCTGCAGTTTTAGCTGGAGGGGTCGAGATGAATGGCCGGT 840 Query 1130 TCTCAGAGCAGTGTGGGTCAATGGAGAAGCATTTTGCAGGCAGGTTTGTCGGATCACCGG 1189 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TCTCAGAGCAGTATGGGTCAATGGAGAAGCATTTTGCAGGCAGGTTTGTCGGATCACCGG 900 Query 1190 GAATGGCTGATGATTCGGATGACGGGTC----T--GGGAAGAGGAAAAGTTCTGGGAAGA 1243 |||||||||||||||| |||||||||| | |||||||||||| |||| |||| || Sbjct 901 GAATGGCTGATGATTCTGATGACGGGTTAGGGTTTGGGAAGAGGAAAGGTTCAGGGATGA 960 Query 1244 AGATGTTCGGTGACTTATGGAAGAAGAAAGGGCAGAAATGAAGTGATATAATAAA 1298 | |||||||||||| | ||||||||||||||||| ||||||||||||| || ||| Sbjct 961 AAATGTTCGGTGACCTGTGGAAGAAGAAAGGGCAAAAATGAAGTGATAGAACAAA 1015 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56145021130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5