BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78430.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927253 jgi|Araly1|927253|scaffold_202814.1 1531 0.0
> Ahg927253 jgi|Araly1|927253|scaffold_202814.1
Length=1024
Score = 1531 bits (829), Expect = 0.0
Identities = 954/1015 (94%), Gaps = 6/1015 (1%)
Strand=Plus/Plus
Query 290 GCAACTTTGCATAAATCAGAATGCCAAAACCAAGTATTAGAGGTTCAGAGTTGCCTCAGA 349
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCAACTTTGCATAAATCAAAATGCCAAAACCAAGTATTAGAGGTTCAGAGTTGCCTCAGA 60
Query 350 GGCAATCTCCTAGGCTAAGGACATCACTGTTGTCCACTTCCTCTGATCCGCATCACCTCA 409
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 61 GGCAATCTCCTAGGCTAAGGACATCACTGGTGTCCACTTCCTCTGATCGGCATCACCTTA 120
Query 410 GCCGTCCGATTACAGACCGGAGTCCAAAGCTCGGCCTTGACCGTAGATCTCCAAGGAGTG 469
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 GCCGTCCGATTACAGACCGGAGTCCAAAGCTAGGCCTTGACCGTAGATCTCCGAGGAGTG 180
Query 470 GTGGGCCTCATACAGATCCGCTGAGTCAGAAGAAGCTTGGAAGTCGCATCTCTGGCTTGG 529
||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 181 GTGGGCCTCATACGGATCCGCTGACTCAGAAGAAGCTTGGAAGTCGTATCTCTGGCTTGG 240
Query 530 AGTCACAGCTAGGACAAGCCCAAGAAGAGTTGAGATTGCTCAAACAGCAGTTGGCTAAAG 589
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGTCACAGCTAGGACAAGCCCAGGAAGAGTTGAGTTTGCTCAAACAGCAGTTGGCTAAAG 300
Query 590 CCGAGGCTGCCAAGAAACGTGCTCAAGAAGAGCTTCATAGGAAGAAATCCAAGAAACCGA 649
| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct 301 CGGAGGCTGCCAAGAAACGTGCCCAAGAAGAGCTTCTTAGGAAGAAATCCAAGAAATCGG 360
Query 650 ACACTCCTGCTCCGGAGAGAGATGACATTCCTGGAGATGGACATCAAGAGACAGATGTGT 709
|| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 ACCCTCCTGCTCAGGAGAGAGATGACATTCCTGGAGATGGACATCAAGAGACCGATGTGT 420
Query 710 TCGAGGTTCTTGATGAGAAAGCAAAAGAAAGTGAGAAGACGAAGAATGATGAATTGGCTT 769
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGAGGTTCTTGTTGAGAAAGAAAAAGAAAGTGAGAAGACGAAGAATGATGAATTGGCTT 480
Query 770 CTAAGGAAGACCAAATCAATGTATTGAAAGCTAGATTATATGACTTGGAGAAAGAAAGGG 829
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 CTAAGGAAGACCAAATCAATGTATTGAAAGCTAGACTATATGACTTGGAGAAAGAAAGGG 540
Query 830 TATCACTTAGCGAGGAGAATGAGACCTTGAAGGATCAGTTGAAGAAGACGGATACGGAAA 889
|||||||| || | ||||| ||| ||||||| |||||||||||||||||||| ||||||
Sbjct 541 TATCACTTGGCCAAGAGAACGAGGGCTTGAAGAATCAGTTGAAGAAGACGGATTCGGAAA 600
Query 890 TGTCCTGCGCAAAGGCGAAAGAGGATGAGATAGCTTCAAAGGTGAGTCAGATTGGGGAAG 949
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTCCAGCGCAAAGGCGAAAGAAGATGAGATAGCTTCAAAGGTGAGTCAGATTGGGGAAG 660
Query 950 AATTGGAAGAAAGCAATGAGACCACAGCGAAGCTAAAGAAGAAGCTCGAATCCGTGGAAG 1009
|| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 AACTAGAAGAAAGCAATGAGACCACAGCGAAGCTAAAGAAAAAGCTCGAATCCGTGGAAG 720
Query 1010 AAGCAAAAGAGACTCTAGAAGCTGAGATGAAGAAGCTGAAGGTCCAAACAGAGCAGTGGA 1069
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 AAGCAAAAGAGAGTCTAGAAGCTGAGATGAAGAAGCTGAAGGTCCAAACCGAGCAGTGGA 780
Query 1070 GGAAAGCAGCAGATGCTGCAGCTGCGGTTTTATCTGGAGGGGTTGAGATGAATGGTCGGT 1129
|||||||||| ||||| |||||||| |||||| |||||||||| ||||||||||| ||||
Sbjct 781 GGAAAGCAGCGGATGCAGCAGCTGCAGTTTTAGCTGGAGGGGTCGAGATGAATGGCCGGT 840
Query 1130 TCTCAGAGCAGTGTGGGTCAATGGAGAAGCATTTTGCAGGCAGGTTTGTCGGATCACCGG 1189
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTCAGAGCAGTATGGGTCAATGGAGAAGCATTTTGCAGGCAGGTTTGTCGGATCACCGG 900
Query 1190 GAATGGCTGATGATTCGGATGACGGGTC----T--GGGAAGAGGAAAAGTTCTGGGAAGA 1243
|||||||||||||||| |||||||||| | |||||||||||| |||| |||| ||
Sbjct 901 GAATGGCTGATGATTCTGATGACGGGTTAGGGTTTGGGAAGAGGAAAGGTTCAGGGATGA 960
Query 1244 AGATGTTCGGTGACTTATGGAAGAAGAAAGGGCAGAAATGAAGTGATATAATAAA 1298
| |||||||||||| | ||||||||||||||||| ||||||||||||| || |||
Sbjct 961 AAATGTTCGGTGACCTGTGGAAGAAGAAAGGGCAAAAATGAAGTGATAGAACAAA 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5