BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78440.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316746 jgi|Araly1|316746|fgenesh1_pm.C_scaffold_2001779 1458 0.0
> Ahg316746 jgi|Araly1|316746|fgenesh1_pm.C_scaffold_2001779
Length=996
Score = 1458 bits (789), Expect = 0.0
Identities = 917/980 (94%), Gaps = 4/980 (0%)
Strand=Plus/Plus
Query 62 ATGGCGGTATTGTCTAAACCGGTAGCAATACCAAAATCCGGGTTCTCTCTAATCCCGGTT 121
|||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCGGTCTTGTCTAAACCGGTCGCAGTACCAAAATCCGGGTTCTCTCCAATCCCGGTT 60
Query 122 ATAGATATGTCTGACCCAGAATCCAAACATGCCCTCGTGAAAGCATGCGAAGACTTCGGC 181
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 61 ATAGATATGTCTGACCCAGAATCCAAGCATGCCCTCGTCAAAGCCTGCGAAGACTTCGGC 120
Query 182 TTCTTCAAGGTGATCAACCATGGCGTTTCCGCAGAGCTAGTCTCTGTTTTAGAACACGAG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTCAAGGTGATCAACCATGGCGTTTCCGCAGAGCTAGTCTCTGTTTTAGAACACGAG 180
Query 242 ACCGTCGATTTCTTCTCGTTGCCCAAGTCAGAGAAAACCCAAGTCGCAGGTTATCCCTTC 301
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ACCGTCGAGTTCTTCTCGTTGCCCAAGTCAGAGAAAACCCTAGTCGCAGGTTATCCCTTT 240
Query 302 GGATACGGGAACAGTAAGATTGGTCGGAATGGTGACGTGGGTTGGGTTGAGTACTTGTTG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATACGGGAACAGTAAGATTGGTCGGAATGGTGACGTGGGTTGGGTTGAGTACTTGTTG 300
Query 362 ATGAACGCTAATCATGATTCCGGTTCGGGTCCACTATTTCCAAGTCTTCTCAAAAGCCCG 421
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ATGAATGCTAATCTTGATTCCGGTTCGGGTCCACTATTTCCGAGTCTTCTCAAAAGCCCG 360
Query 422 GGAACTTTCAGAAACGCATTGGAAGAGTACACAACATCAGTGAGAAAAATGACATTCGAT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GGAACTTTCAGAAACGCATTGGAAGAGTACACAACATCAGTGAGAAAAATGACATGCGAT 420
Query 482 GTTTTGGAGAAGATCACAGATGGGCTAGGGATCAAACCGAGGAACACACTTAGCAAGCTT 541
|||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 421 GTTTTGGAGATGATCACAGATGGGCTAGGGATCAAACCGATGAACACAATAAGCAAGCTT 480
Query 542 GTGTCTGACCAAAACACGGACTCGATATTGAGACTTAATCACTATCCACCATGTCCTCTT 601
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 481 GTGTCTGACCAAAACACTGATTCGATATTGAGACTTAACCACTATCCACCATGTCCTCTT 540
Query 602 AGCAATAAGAAAACCAATGGTGGT-AAGAATGTGATTGGTTTTGGTGAACACACAGATCC 660
| | | ||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 541 ATCGACAAGAAGACCAACGGTGGGGAA-AATGTGATTGGTTTTGGCGAACACACAGATCC 599
Query 661 TCAAATCATCTCTGTCTTAAGATCTAACAACACTTCTGGTCTCCAAATTAATCTAAATGA 720
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 600 TCAAATCATCTCTGTCTTGAGATCTAACAACACTTCTGGTCTCCAAATCAATATAACTGA 659
Query 721 TGGCTCATGGATCTCTGTCCCTCCCGATCACACTTCCTTCTTCTTCAACGTTGGTGACTC 780
||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 660 CGGCTCTTGGGTCGCTGTCCCTCCCGATCACTCTTCCTTCTTCTTCAACGTTGGTGACTC 719
Query 781 TCTCCAGGTGATGACAAATGGGAGGTTCAAGAGCGTGAGGCATAGGGTTTTAGCTAACTG 840
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 720 TCTTCAGGTGATGACAAATGGGAGGTTCAGGAGCGTGAGGCATAGGGTTTTAGCGAACGG 779
Query 841 TAAAAAATCTAGGGTTTCTATGATTTACTTCGCTGGACCTTCATTGACTCAGAGAATCGC 900
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TGGCAAATCTAGGGTTTCTATGATTTACTTCGCTGGACCTTCGTTGACTCAGAGAATCGC 839
Query 901 TCCGTTGACATGT-TTGATAGACAATGAGGACGAGAGGTTGTACGAGGAGTTTACTTGGT 959
||||||||| ||| || || ||||| || ||||||| ||||||||| ||||| |||||||
Sbjct 840 TCCGTTGACTTGTCTT-ATGGACAACGAAGACGAGATGTTGTACGAAGAGTTCACTTGGT 898
Query 960 CTGAATACAAAAACTCTACCTACAACTCTAGATTGTCTGATAATAGGCTTCAACAATTCG 1019
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTGAGTACAGAAACTCTGCCTACAACTCTAGATTGTCTGATAATAGGCTTCAACAATTCG 958
Query 1020 AAAGGAAGACTATAAAAAAT 1039
| || ||||||| ||| |||
Sbjct 959 AGAGAAAGACTACAAATAAT 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5