BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78460.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927256 jgi|Araly1|927256|scaffold_202817.1 887 0.0
> Ahg927256 jgi|Araly1|927256|scaffold_202817.1
Length=689
Score = 887 bits (480), Expect = 0.0
Identities = 626/694 (90%), Gaps = 19/694 (3%)
Strand=Plus/Plus
Query 8 TCATTTAAGTCTATTCAATCATGGAAACCGGTTTAAACATCTTAAAGCTATCGCTATGCG 67
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCATTAAAGTCTATTCAATCATGGAAACCGGTTTAAACATCTTAAAGCTATCGCTATGCC 60
Query 68 TCAGCCTAGTCGTGGTTGGATCATATGCTCAGGCTCCCGCACCATGGAATCCATCTAATG 127
||||||||| ||||||||||||||||||||| ||||||||||| || | |||||
Sbjct 61 TCAGCCTAGCCGTGGTTGGATCATATGCTCAAGCTCCCGCACC-----AT---T-TAATG 111
Query 128 GGTTTCGTCCGGGGACATGTGACCACTACGAGTGTCCCACCTATAAATTGGTAGAGGCCG 187
|||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 112 GGTTTCGTCCTGGAACATGTGACCACTACGAGTGCCCCACCTATAAACTGGTAGAGGCCG 171
Query 188 GATACGGCTTTGAGATCCGCATGTACGACGCTGCCCTATGGATATCTACTAGTCCTATCC 247
||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||
Sbjct 172 GATACGGCTTTGAGATCCGAATGTATGACGCTGCGCTATGGATTTCTACTAGTCCTATCC 231
Query 248 CCTCCCTATCCATGACTCAAGCCACCAAAACCGGTTTCCGACGATTAAATAGGTACATAG 307
|| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 232 CCGCCCCATCCATGACTCAAGCCACCAAAACCGGTTTCCGACGATTATTTAGTTACATAC 291
Query 308 AAGGAGATAACAAGAGCAACGTGAAGATGAACATGACAGCTCCGGTGATCGCACAAGCAA 367
||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 292 AAGGAGATAACAAGAGCAAAGTGAAAATGAACATGACAGCTCCGGTGATCACACAAGCAA 351
Query 368 CGCCTGGAAGATCAGTCTACACGGTCTCAC-TCTACCTCCCGAAGAAGAACCAACAGAAC 426
|||| |||| ||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 352 CGCCGGGAAAATCAGTCTACACGATCTC-CTTCTACCTCCCGAAGAAGAACCAACAGAAC 410
Query 427 CCACCTCAGGCCGATGATCTCCACGTTCGGTCTACG-AAACCAACTTACGTAGCCGTGAG 485
||||||||||||||||||||||| || | ||| | | |||||||| ||||||||||||||
Sbjct 411 CCACCTCAGGCCGATGATCTCCATGTGCAGTC-ATGGAAACCAACCTACGTAGCCGTGAG 469
Query 486 ACAGATCGGTGGCTACGTGTCGAACAATGTAGCCAAGGACGAAGCTGCGGCTCTGATGGA 545
||||||||||| ||||||||| | ||||||||||| | ||||||||||||||||||||
Sbjct 470 GCAGATCGGTGGGTACGTGTCGGATGATGTAGCCAAGAAAGAAGCTGCGGCTCTGATGGA 529
Query 546 AAGCCTCCGG-GATTCTAACTGGATTTTGCCCATCGAGAAGAGCAAAGGAAAGTTGCCGG 604
|||||||| | | |||| |||||||||| ||| |||||||||||| |||||||| |||||
Sbjct 530 AAGCCTCCAGAG-TTCTGACTGGATTTTACCCGTCGAGAAGAGCAGAGGAAAGTCGCCGG 588
Query 605 CGTATTTTCTCGCTGTTTATAACCCGCCATCTCATACCACGGCTAGGGTGATTAATGAGA 664
||||| | |||||| |||||||||||| ||||| |||||||||||||| | |||||||
Sbjct 589 CGTATATAGTCGCTGATTATAACCCGCCGTCTCAGACCACGGCTAGGGT--T-AATGAGA 645
Query 665 TCATGGTTCCGTTTAACATGTAGATCATGTTAAT 698
|||||||||| ||||||||||| |||||||||||
Sbjct 646 TCATGGTTCCATTTAACATGTA-ATCATGTTAAT 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5