BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78470.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909475 jgi|Araly1|909475|Al_scaffold_0002_2556 1360 0.0
> Ahg909475 jgi|Araly1|909475|Al_scaffold_0002_2556
Length=993
Score = 1360 bits (736), Expect = 0.0
Identities = 916/1002 (91%), Gaps = 15/1002 (1%)
Strand=Plus/Plus
Query 34 ATGAAACACACCAAAAATCTTATCCTTGCAAATTTTAATGGTCGCTTCGCACCAACAGGT 93
||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
Sbjct 1 ATGAAACACACCAAAAATCTTATCCTTGCAAATTTTAATGGTCACCTCGTACCAACAATT 60
Query 94 GAAGACAATGTGCTCAAGCTGTCCACAGAGACATTCAACCATCC-AAGCCTAAGAACACT 152
|||| | ||||||| ||||| ||| |||||| |||| |||| || ||| |||||||||||
Sbjct 61 GAAGCCTATGTGCTTAAGCTTTCCCCAGAGATATTCTACCACCCAAAG-CTAAGAACACT 119
Query 153 CTCGCTATATCAATACATATTACAAGATGCACAAGCTTTTAACAATTGTAAAAATCTCAA 212
|||||||||||||||||||||||| |||||||| || ||||||||||||| ||||||||
Sbjct 120 CTCGCTATATCAATACATATTACAGGATGCACATGCCTTTAACAATTGTAGGAATCTCAA 179
Query 213 GTACCTTGACCTGTTTCAAATCTTTGCTGAGGTTGATGTTTTCAACGAAGTCATCTCGTC 272
| ||||||| || || ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 180 GCACCTTGAACTCTTGCAAATCTTTGCTGAGATTGGTGTTTTCAACGAAGTCATCTCGTC 239
Query 273 TTGCCCCTCCCTCGAGGTTCTTATCCTACAAATCATTTTCTTCAACCCCAGTGGTCATTT 332
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGCCCCTCCCTGGAGGTTCTTATCCTACAAATCATTTTCTTCAACCCCAGTGGTCATTT 299
Query 333 GAAGATTGATCATAAAACGTTAAGGATCTTGTCCATGTCATGCAACCAAATTGATAGCAT 392
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GAAGATTGATCATAAAAATTTAAGGATCTTGTCCATCTCATGCAACCAAATTGATAGCAT 359
Query 393 TGAAGTGCGTGCAGCTCGTCTTGATATTCTCTCCATAGAATATATCCCATGTGAGAGTGA 452
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 360 TGAAGTGCGTGCAACTCGTCTTGATATTCTCTCCATAGAAAATATCCTATGTGAGAGTGA 419
Query 453 TAACGTCGTTCTCGAAATTCCTAGACTCCAGTTTGGTAGAAACTATTGGGTAGCAGGAAG 512
||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 TAAGGTCGTTCTCGAAATCCCTAGACTCCCGTTTGGTAGAAACTATTGGGTAGCAGGAAG 479
Query 513 ACTCTTGCCTCATACTAGCATCAACATCTCATGTCCCCCTCAGAAGCAA-GAAAGCAACG 571
||||| |||||||| |||||||| ||||||||||||||| ||||| || ||||||| |
Sbjct 480 GCTCTTTCCTCATACCAGCATCAATATCTCATGTCCCCCTAAGAAG-AACGAAAGCAGTG 538
Query 572 GGATGGTGAAGTGGGATAC-CAACTATGCAACATCACCTGCATCTTTATCTGTGAGTTTA 630
|||||| | | || | | |||| ||| ||||| | ||||||||||||||||||||||
Sbjct 539 GGATGGCG-A--GGCCT-CTCAACAATGTAACATTTCTTGCATCTTTATCTGTGAGTTTA 594
Query 631 GATTTGAAGAATCCTCGAGAAGTAGAAGTGCTAAGGAAAATCTTAGCTGTGTGGACTGAA 690
||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||
Sbjct 595 GATTTGAAGAATCCTCGAGAAGTCGAGGTGCTAAGGAAAATGTTAGCTGTTTGGACTGAA 654
Query 691 AAAATGATAGAAGTTGAAATATCATTTAAGAATAACAATCCTCTTGGGGAAGAAGGCAAT 750
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 655 AAAATGATAGAACTTGAAATATCATTTAAGCATAACAATTCTCTTGGGGAAGAAGGCAAA 714
Query 751 TCTTCTGACGGTGGAGCACAA-AACAATTTATGGGAGAAGGCAGAACCGTTTCCCAATGC 809
|||||| | ||||||||| || ||||| | |||||||||||||||||||||||||||||
Sbjct 715 TCTTCTAAAGGTGGAGCA-AATAACAAGCTGTGGGAGAAGGCAGAACCGTTTCCCAATGC 773
Query 810 TGACTTTCGTGTGGATACTATATGGATGCACAATTTCAAG-GGTTCAAATAAAGAACAAT 868
||| ||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 774 TGATTTTCGCGTGGATACTATATGGATGCACAATTTCA-GCGGTTCAAGTAAAGAACAAT 832
Query 869 TTGCACTAGCGTCGCGTTTCGTGATGCAAAAGACAGTAatgaagaagatgatgattaaga 928
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTGCACTAGCTTCGCGTTTTGTGATGCAAAAGACAGTAATGAAGAAGATGATGATTAAGA 892
Query 929 catcatttgatgaaaagaagaagaaagag-atagaagCGGCAGTTGCCAAGCTAAAGGAA 987
| |||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 893 CCTCATCTGACGAAAAGAAGAAGAAA-AGGATAGAAGCGGCAGTTGCCAAGCTAAAGGAA 951
Query 988 CTTCCAAAAGGTAACGAGGAGCTTAGTATCGAATGCTTCTAA 1029
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 952 CTTCCAAAAGGTAACAAGGAGCTTAGTATCGAATGCTTCTAA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5