BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78490.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001 1539 0.0
Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1 1528 0.0
Ahg924121 jgi|Araly1|924121|scaffold_105402.1 180 4e-44
Ahg924128 jgi|Araly1|924128|scaffold_105409.1 150 3e-35
Ahg924130 jgi|Araly1|924130|scaffold_105411.1 148 1e-34
Ahg924124 jgi|Araly1|924124|scaffold_105405.1 148 1e-34
> Ahg333193 jgi|Araly1|333193|fgenesh1_pm.C_scaffold_122000001
Length=1350
Score = 1539 bits (833), Expect = 0.0
Identities = 1060/1166 (91%), Gaps = 29/1166 (2%)
Strand=Plus/Plus
Query 214 ATGGGTTTTCCAATCATTGGAGAGACTCTCGATTTCTTTAAGCCTTGTGGAGTCGAA-GG 272
||||| ||||||||||||||||||||| | |||||||| |||||||||||| || || |
Sbjct 80 ATGGG-TTTCCAATCATTGGAGAGACTATTGATTTCTTAAAGCCTTGTGGATTC-AACGA 137
Query 273 TATCCCAACCTTTGTTAAGAAGAGGATGATAAGGTATGGGCCGTTGTTTCGAACAAACAT 332
||||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 138 TATCCCAACCTTTGTAAAGAAGAGGATGATAAGGTATGGACTGTTGTTTCGGACAAACAT 197
Query 333 TTTTGGTTCCAAAACCGTGGTTTCGACAGATCCGGATGTGATCCACCAGATTTTCCGGCA 392
||| ||||||||||||||||||||| | ||||| ||||| ||| ||||||||||||||||
Sbjct 198 TTTCGGTTCCAAAACCGTGGTTTCGGCGGATCCAGATGTAATCAACCAGATTTTCCGGCA 257
Query 393 AGAGAACACGTCTTTTGAGCTAGGCTATCCAGACATATTTGTGAAAGTATTTGGAAAAGA 452
||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||
Sbjct 258 AGAGAACACGTCTTTTGGGCTAGGCTATCCGGACATACTTGTGAAAGTATTTGGAAAAGA 317
Query 453 TAATTTGTTCTTGAAGGAAGTGTTCATCCACAAGTACCTCCAAAAAATCACTATGCAAAT 512
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 318 TAATTTGTTCTTGAAGGAAGTGTTCATCCACAAGTACCTCCACAAAGTCACTATGCAAAT 377
Query 513 TCTTGGCTCCGAGGGTTTGAAGCAAACAATGTTAGGAAACATGGACAAAGCAACCCGCGA 572
| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 378 TATTGGCTCCGAGGGTTTGAAGCAAACAATGATAGGAAACATGGACAAAGCTACCCGCGA 437
Query 573 CCATATTAGGTCCATTGCTAGCCAGGGGAGCTTCAATGTTCGTAAAGAAGTTGAAAACTT 632
|||| |||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 CCATTTTAGATTGAAGGCTAGCCAGGGGAGCTTCAATGTTCGTAAAGAAGTTGAAAACTT 497
Query 633 GGTAGTAGCGTACATGACACCAAAGCTGATAAGTAACCTTAAACCAGAGACGCAATCAAA 692
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GATTGTGGCGTACATGACACCAAAGCTGATAAGTAACCTTAAACCAGAGACGCAATCAAA 557
Query 693 GCTTATAGATAATCTCAACGCCTTCAATCTTGATTGGTTTAAGTCCTTCTTAAGACTCTC 752
|||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 558 GCTTATAGATAATCTCAACGCCTTCAATCTTGATTGGTTTCAGTCCTTCTTTAGTCTCTC 617
Query 753 TACTTGGAAAGCTGTCACCAAAGCCCTCAAGTCACGCGAAGAAGCTATCCAGGTGATGAA 812
| ||||||||||| ||| ||||| |||||||||||||| |||||| || |||||||||||
Sbjct 618 TTCTTGGAAAGCTCTCATCAAAGTCCTCAAGTCACGCGGAGAAGCGATTCAGGTGATGAA 677
Query 813 AGACGTTCTCATG-ATGAGAAAAGAGACGCGAGAGAAGCAAGAAGACTTCCTTAACACGC 871
||||||||||| | ||||||| |||| | |||||||||||||||||||| || ||||||
Sbjct 678 AGACGTTCTCA-GTATGAGAAGAGAGTCACGAGAGAAGCAAGAAGACTTACTCAACACG- 735
Query 872 TT-CTAGAAGAACTGGAGAAAGACGGTAGCTTTTTCGACCAAGGATCGGCTATAAATCTC 930
|| |||||||||||||| ||||| ||||| |||||||||||||||| |||| ||| |||
Sbjct 736 TTGCTAGAAGAACTGGACAAAGAAAGTAGCATTTTCGACCAAGGATCCGCTACAAACCTC 795
Query 931 ATCTTCCTTCTGGCGTTTGCCTTGAGAGAAGGTACCTCTAGTTGTACTGCTTTGGCCGTG 990
|||||||||||||| || | | ||||||||||||||| |||||||||||||||||||||
Sbjct 796 ATCTTCCTTCTGGCATTCGTCGCGAGAGAAGGTACCTCCAGTTGTACTGCTTTGGCCGTG 855
Query 991 AAGTTCATATCCAAAGACCCGAAAGTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATT 1050
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AAATTCATATCCAAAGACCCGAAAGTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATT 915
Query 1051 GTAGACAACAGAAAAGATAAGGAAGCTGGAGTTAGCTGGGAAGAATATAGACACAACATG 1110
||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct 916 GTAGACAACAGAAAAGATAAGAAAGCTGGAGTTAGCTGGGAAGAATACACACACAACATG 975
Query 1111 ACTTTCACCAACATGGTTAGCAATGAGGT-GCTTCGCCTAG-CAAACACGACCCCTTTGT 1168
|||||||| |||||||||| ||||||| | ||||||||| | |||||||||||||||| |
Sbjct 976 ACTTTCACAAACATGGTTATCAATGAG-TCGCTTCGCCT-GTCAAACACGACCCCTTTAT 1033
Query 1169 TGTTTCGAAAGGCGGTGCAAGATGTTGAGATCAAAGG-A--TA-TAC----AA---T-T- 1215
||||||||||||| |||| ||||||||||||||||| | || ||| || | |
Sbjct 1034 TGTTTCGAAAGGCACTGCACGATGTTGAGATCAAAGGCAAGTACTACTTGGAAAGATATA 1093
Query 1216 C----C-GGCTGGTTGGATTGTGGCGGTTGCACCTTCAGCGGTTCATTTTGATCCTGCAA 1270
| | |||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct 1094 CAATTCCGGCTGGTTGGATTGTGGCAGTTGCACCTTCAGCGGTTCATTATGATCCTACAA 1153
Query 1271 TCTATGAGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGATTTGGG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1154 ACTATGAGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGACTCGGG 1213
Query 1331 GATCTAAAACGTTCATGGCGTTTGGA 1356
| ||||||||||||||||||||||||
Sbjct 1214 GGTCTAAAACGTTCATGGCGTTTGGA 1239
Score = 121 bits (65), Expect = 2e-26
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 97 ATGAGCTCCATATGGAACGTTGCAATGTTGATGGTAGCTTTGGTGGTTGTGAGGATCAGC 156
|||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 1 ATGAGCTCCATATGGAACGTTGCAATGTTGATATTAGCCTTAGTGGTTGTGAGGATCAGC 60
Query 157 CACTGGCTTTACCGATG 173
|||||||||||||||||
Sbjct 61 CACTGGCTTTACCGATG 77
> Ahg477012 jgi|Araly1|477012|fgenesh2_kg.2__2142__AT1G78490.1
Length=1579
Score = 1528 bits (827), Expect = 0.0
Identities = 992/1073 (92%), Gaps = 6/1073 (1%)
Strand=Plus/Plus
Query 58 AAGAGTTGTAGCTGTGGTCAACACTTGAGAGGCAGCACGATGAGCTCCATATGGAACGTT 117
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 AAGAGTTGTCGCTGTGGTCAACACTTGAGAGGCAGCACGATGAGCTCCATATGGAACGTT 87
Query 118 GCAATGTTGATGGTAGCTTTGGTGGTTGTGAGGATCAGCCACTGGCTTTACCGATGGTCA 177
||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 88 GCAATGTTGATATTAGCCTTAGTGGTTGTGAGGATCAGCCACTGGCTTTACCGATGGTCA 147
Query 178 AACCCTAAGTGCCCTGGCAAGTTACCACCTGGATCGATGGGTTTTCCAATCATTGGAGAG 237
||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 148 AACCCTAAGTGTAATGGCAAGTTACCACCGGGAGCTATGGGTTTTCCAATCATTGGAGAG 207
Query 238 ACTCTCGATTTCTTTAAGCCTTGTGGAGTCGAA-GGTATCCCAACCTTTGTTAAGAAGAG 296
||| | |||||||| |||||||||||| || || | ||||||||||||||| ||||||||
Sbjct 208 ACTATTGATTTCTTAAAGCCTTGTGGATTC-AACGATATCCCAACCTTTGTAAAGAAGAG 266
Query 297 GATGATAAGGTATGGGCCGTTGTTTCGAACAAACATTTTTGGTTCCAAAACCGTGGTTTC 356
||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 267 GATGATAAGGTATGGACTGTTGTTTCGGACAAACATTTTCGGTTCCAAAACCGTGGTTTC 326
Query 357 GACAGATCCGGATGTGATCCACCAGATTTTCCGGCAAGAGAACACGTCTTTTGAGCTAGG 416
| | ||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 327 GGCGGATCCAGATGTAATCAACCAGATTTTCCGGCAAGAGAACACGTCTTTTGGGCTAGG 386
Query 417 CTATCCAGACATATTTGTGAAAGTATTTGGAAAAGATAATTTGTTCTTGAAGGAAGTGTT 476
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CTATCCGGACATACTTGTGAAAGTATTTGGAAAAGATAATTTGTTCTTGAAGGAAGTGTT 446
Query 477 CATCCACAAGTACCTCCAAAAAATCACTATGCAAATTCTTGGCTCCGAGGGTTTGAAGCA 536
|||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 447 CATCCACAAGTACCTCCACAAAGTCACTATGCAAATTATTGGCTCCGAGGGTTTGAAGCA 506
Query 537 AACAATGTTAGGAAACATGGACAAAGCAACCCGCGACCATATTAGGTCCATTGCTAGCCA 596
||||||| ||||||||||||||||||| |||||||||||| |||| | | ||||||||
Sbjct 507 AACAATGATAGGAAACATGGACAAAGCTACCCGCGACCATTTTAGATTGAAGGCTAGCCA 566
Query 597 GGGGAGCTTCAATGTTCGTAAAGAAGTTGAAAACTTGGTAGTAGCGTACATGACACCAAA 656
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 567 GGGGAGCTTCAATGTTCGTAAAGAAGTTGAAAACTTGATTGTGGCGTACATGACACCAAA 626
Query 657 GCTGATAAGTAACCTTAAACCAGAGACGCAATCAAAGCTTATAGATAATCTCAACGCCTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GCTGATAAGTAACCTTAAACCAGAGACGCAATCAAAGCTTATAGATAATCTCAACGCCTT 686
Query 717 CAATCTTGATTGGTTTAAGTCCTTCTTAAGACTCTCTACTTGGAAAGCTGTCACCAAAGC 776
|||||||||||||||| |||||||||| || |||||| ||||||||||| ||| |||||
Sbjct 687 CAATCTTGATTGGTTTCAGTCCTTCTTTAGTCTCTCTTCTTGGAAAGCTCTCATCAAAGT 746
Query 777 CCTCAAGTCACGCGAAGAAGCTATCCAGGTGATGAAAGACGTTCTCA-TGATGAGAAAAG 835
|||||||||||||| |||||| || |||||||||||||||||||||| | ||||||| ||
Sbjct 747 CCTCAAGTCACGCGGAGAAGCGATTCAGGTGATGAAAGACGTTCTCAGT-ATGAGAAGAG 805
Query 836 AGACGCGAGAGAAGCAAGAAGACTTCCTTAACACGCTT-CTAGAAGAACTGGAGAAAGAC 894
|| | ||||||||||||||||||||||| |||||| || |||||||||||||| |||||
Sbjct 806 AGTCACGAGAGAAGCAAGAAGACTTCCTCAACACG-TTGCTAGAAGAACTGGACAAAGAA 864
Query 895 GGTAGCTTTTTCGACCAAGGATCGGCTATAAATCTCATCTTCCTTCTGGCGTTTGCCTTG 954
||||| |||||||||||||||| |||| ||| ||||||||||||||||| || | | |
Sbjct 865 AGTAGCATTTTCGACCAAGGATCCGCTACAAACCTCATCTTCCTTCTGGCATTCGTCGCG 924
Query 955 AGAGAAGGTACCTCTAGTTGTACTGCTTTGGCCGTGAAGTTCATATCCAAAGACCCGAAA 1014
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 925 AGAGAAGGTACCTCCAGTTGTACTGCTTTGGCCGTGAAATTCATATCCAAAGACCCGAAA 984
Query 1015 GTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATTGTAGACAACAGAAAAGATAAGGAA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 985 GTGCTTGCAGAGCTCAAGCGTGAGCATAAGGCAATTGTAGACAACAGAAAAGATAAGAAA 1044
Query 1075 GCTGGAGTTAGCTGGGAAGAATATAGACACAACATGACTTTCACCAACATGGT 1127
||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 1045 GCTGGAGTTAGCTGGGAAGAATACACACACAACATGACTTTCACAAACATGGT 1097
Score = 401 bits (217), Expect = 7e-111
Identities = 272/297 (92%), Gaps = 10/297 (3%)
Strand=Plus/Plus
Query 1126 GTTAGCAATGAGGT-GCTTCGCCTAG-CAAACACGACCCCTTTGTTGTTTCGAAAGGCGG 1183
|||| |||||| || ||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 1131 GTTATCAATGA-GTCGCTTCGCCT-GTCAAACACGACCCCTTTATTGTTTCGAAAGGCAC 1188
Query 1184 TGCAAGATGTTGAGATCAAA-G---GATATACAATTCCGGCTGGTTGGATTGTGGCGGTT 1239
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1189 TGCACGATGTTGAGATCAAAGGCAAGATATACAATTCCGGCTGGTTGGATTGTGGCAGTT 1248
Query 1240 GCACCTTCAGCGGTTCATTTTGATCCTGCAATCTATGAGAACCCATTTGAGTTTAATCCA 1299
||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 1249 GCACCTTCAGCGGTTCATTATGATCCTATAAACTATGAGAACCCATTTGAGTTTAATCCA 1308
Query 1300 TGGAGATGGGAGGGGAAAGAAATGATTTGGGGATCTAAAACGTTCATGGCGTTTGGATA- 1358
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |
Sbjct 1309 TGGAGATGGGAGGGGAAAGAAATGACTCGGGGGTCTAAAACGTTCATGGCGTTTGGA-AG 1367
Query 1359 TGGAGTTAGACTTTGTGTAGGTGCAGAGTTTTCACGGCTTCAAATGGCAATCTTCCT 1415
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1368 TGGAGTTAGACTTTGTGTAGGTGCAGAGTTTGCGCGGCTTCAAATGGCAATCTTCCT 1424
Score = 117 bits (63), Expect = 3e-25
Identities = 77/83 (93%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 1498 GATCTGCTTATAAACATCTCTCAGTCTCCTACCAAGTGAACCATGCATGCAGTTTCCAAA 1557
||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 1432 GATCTGCTTGTAAACATCTCCCAGTCTCCTACCAAGTGAA-C---CATGCAGTTTCCAAA 1487
Query 1558 TCTTAATAATCAGATCATTATAT 1580
|||||||||||||||||||||||
Sbjct 1488 TCTTAATAATCAGATCATTATAT 1510
Score = 67.6 bits (36), Expect = 3e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1679 GAGTTAAACTTTGTTTATATATGTCTTGAATCTGATCACATG 1720
||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1537 GAGTTCAGCTTTGTTTATATATGTCTTGAATCTGATCACATG 1578
> Ahg924121 jgi|Araly1|924121|scaffold_105402.1
Length=499
Score = 180 bits (97), Expect = 4e-44
Identities = 210/263 (80%), Gaps = 14/263 (5%)
Strand=Plus/Plus
Query 1169 TGTTTCGAAAGGCGGTGCA-AGATGTTGAGATCAAAGGATATACAATTCCGGCTGGTTGG 1227
||||| |||||| |||| | ||||| ||||||||||| ||||||||||| || || |||
Sbjct 85 TGTTTAGAAAGGTGGTG-AGTGATGTGGAGATCAAAGGGTATACAATTCCAGCAGGATGG 143
Query 1228 ATTGTGGCGGTTGCACC-T-TCAGCGGTTCATTTTGATCCTGC-AATCTATG-AGAACCC 1283
||||| ||||| || | || | |||||| ||| ||| | |||||||| | || ||
Sbjct 144 ATTGTATTGGTTGTTCCATCTCTTC--TTCATTATGACCCT-CAAATCTATGAACAA-CC 199
Query 1284 ATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGATTTGGGGATCTAAAACGTT 1343
|| |||||||||||||||||||||||||||||| ||| || |||| || |||||||||||
Sbjct 200 ATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGCTTTGTGGCTCTAAAACGTT 259
Query 1344 CATGGCGTTTGGATA-TGGAGTTAGACTTTGTGTAGGTGCAGAGTTTTC-ACGGCTTCAA 1401
|||||||||||| | ||| | ||||| |||| ||| ||||||||| | | |||||
Sbjct 260 CATGGCGTTTGG-TGGTGGTGCAAGACTATGTGCAGGAGCAGAGTTTGCTA-GGCTTGGG 317
Query 1402 ATGGCAATCTTCCTCCATCATCT 1424
||||| || || || ||||||||
Sbjct 318 ATGGCTATATTTCTTCATCATCT 340
> Ahg924128 jgi|Araly1|924128|scaffold_105409.1
Length=472
Score = 150 bits (81), Expect = 3e-35
Identities = 181/228 (79%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 1203 AGGATATACAATTCCGGCTGGTTGGATTGTGGCGGTTGCACC-T-TCAGCGGTTCATTTT 1260
||| ||||||||||| || || |||||||| ||||| || | || | |||||| |
Sbjct 92 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTC--TTCATTAT 149
Query 1261 GATCCTGC-AATCTATG-AGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAG 1318
|| ||| | |||||||| | || |||| |||||||||||||||||||||||||||||| |
Sbjct 150 GACCCT-CAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGG 207
Query 1319 AAATGATTTGGGGATCTAAAACGTTCATGGCGTTTGGATA-TGGAGTTAGACTTTGTGTA 1377
|| || |||| || ||||||||||||||||||||||| | ||| | ||||| |||| |
Sbjct 208 AATTGCTTTGTGGCTCTAAAACGTTCATGGCGTTTGG-TGGTGGTGCAAGACTATGTGCA 266
Query 1378 GGTGCAGAGTTTTC-ACGGCTTCAAATGGCAATCTTCCTCCATCATCT 1424
|| ||||||||| | | ||||| ||||| || || || ||||||||
Sbjct 267 GGAGCAGAGTTTGCTA-GGCTTGGGATGGCTATATTTCTTCATCATCT 313
> Ahg924130 jgi|Araly1|924130|scaffold_105411.1
Length=1543
Score = 148 bits (80), Expect = 1e-34
Identities = 178/224 (79%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 1207 TATACAATTCCGGCTGGTTGGATTGTGGCGGTTGCACC-T-TCAGCGGTTCATTTTGATC 1264
||||||||||| || || |||||||| ||||| || | || | |||||| ||| |
Sbjct 1167 TATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTC--TTCATTATGACC 1224
Query 1265 CTGC-AATCTATG-AGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAAT 1322
|| | |||||||| | || |||| |||||||||||||||||||||||||||||| ||| |
Sbjct 1225 CT-CAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATT 1282
Query 1323 GATTTGGGGATCTAAAACGTTCATGGCGTTTGGATA-TGGAGTTAGACTTTGTGTAGGTG 1381
| |||| || ||||||||||||||||||||||| | ||| | ||||| |||| ||| |
Sbjct 1283 GCTTTGTGGCTCTAAAACGTTCATGGCGTTTGG-TGGTGGTGCAAGACTATGTGCAGGAG 1341
Query 1382 CAGAGTTTTC-ACGGCTTCAAATGGCAATCTTCCTCCATCATCT 1424
|||||||| | | ||||| ||||| || || || ||||||||
Sbjct 1342 CAGAGTTTGCTA-GGCTTGGGATGGCTATATTTCTTCATCATCT 1384
> Ahg924124 jgi|Araly1|924124|scaffold_105405.1
Length=520
Score = 148 bits (80), Expect = 1e-34
Identities = 178/224 (79%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 1207 TATACAATTCCGGCTGGTTGGATTGTGGCGGTTGCACC-T-TCAGCGGTTCATTTTGATC 1264
||||||||||| || || |||||||| ||||| || | || | |||||| ||| |
Sbjct 144 TATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTC--TTCATTATGACC 201
Query 1265 CTGC-AATCTATG-AGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAAT 1322
|| | |||||||| | || |||| |||||||||||||||||||||||||||||| ||| |
Sbjct 202 CT-CAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATT 259
Query 1323 GATTTGGGGATCTAAAACGTTCATGGCGTTTGGATA-TGGAGTTAGACTTTGTGTAGGTG 1381
| |||| || ||||||||||||||||||||||| | ||| | ||||| |||| ||| |
Sbjct 260 GCTTTGTGGCTCTAAAACGTTCATGGCGTTTGG-TGGTGGTGCAAGACTATGTGCAGGAG 318
Query 1382 CAGAGTTTTC-ACGGCTTCAAATGGCAATCTTCCTCCATCATCT 1424
|||||||| | | ||||| ||||| || || || ||||||||
Sbjct 319 CAGAGTTTGCTA-GGCTTGGGATGGCTATATTTCTTCATCATCT 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5