BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G78520.1

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316754 jgi|Araly1|316754|fgenesh1_pm.C_scaffold_2001787           492    8e-139


> Ahg316754 jgi|Araly1|316754|fgenesh1_pm.C_scaffold_2001787
Length=399

 Score =  492 bits (266),  Expect = 8e-139
 Identities = 305/324 (94%), Gaps = 2/324 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTAAAGCATGGATCTGCCTTTCCTTCCTCATCTTCCTCTACCTTGTCTCAGAAC-G  59
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||  
Sbjct  1    ATGGCTAAAGCATGGATCTGCCTTTCCTTCCTCATCATCCTCTACCTTTTCTCAG-ACAA  59

Query  60   AAACTTCATCAACGTCAACGCAGAGACCAAGACTTGGTGTGTGGCTAAACCTTCTTCCGA  119
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct  60   AAACTTCATCAACGTCAACGCAGAGACTAAGACTTGGTGTGTGGCCAAACCTTCTTCGGA  119

Query  120  TCAAGTAGCACTTCAAGATAACATAAACTTCGCATGTTCTCATGTTGATTGTCGTGTTCT  179
            ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TCAAGCAACACTTCTAGATAACATAAACTTCGCATGTTCTCATGTTGATTGTCGTGTTCT  179

Query  180  TTTGAGTGGATGTCCATGTTACTCCCCTAGTAACCTCATCAACCATGCATCTATCGCCAT  239
            || |||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct  180  TTCGAGTGGATGTCCATGTTATTCCCCTGGTAACCTCATCAACCATGCTTCTATCGCCAT  239

Query  240  GAATCTTTATTACCAAGCCAATGGAAGAAACTATTGGAACTGCAATTTCAAGAACTCCGG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  240  GAATCTTTATTACCAAGCCAATGGAAGAAACTATTGGAACTGCAATTTCAAAAACTCTGG  299

Query  300  ACTCATTACCATAACTAATCCGAG  323
            |||||||  |||||||||||||||
Sbjct  300  ACTCATTGTCATAACTAATCCGAG  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12362410836


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5