BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78530.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477017 jgi|Araly1|477017|fgenesh2_kg.2__2147__AT1G78530.1 1784 0.0
> Ahg477017 jgi|Araly1|477017|fgenesh2_kg.2__2147__AT1G78530.1
Length=1218
Score = 1784 bits (966), Expect = 0.0
Identities = 1102/1166 (95%), Gaps = 15/1166 (1%)
Strand=Plus/Plus
Query 20 AGAAAAACAATGGCTAATGCAAAGGAAACAACGTTTTATATAACAATCTCTGTGGTTGCT 79
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AGAGAAACAATGACTAATGCAAAGGAAACAACGTTTTATATAACAATCTCTGTGGTTGTT 60
Query 80 TTTGTCATTGGCAAAATCGTAATCGCTCTTCTTTTCTACAAGAGATGGAAGAGAAAGCAC 139
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 61 TTTGTCATTGGCAAAATCGTAATCGCTGTTCTTCTCTACAAGAGATGGAAGAGAAAGCAC 120
Query 140 ACAATTCATGAAAATGGATTTCCAGTCAAAGGAGGAGGAAAAATGGTGATGTTTAGATCT 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGTTCATGAAAATGGATTTCCAGTCAAAGGAGGAGGAAAAATGGTGATGTTTAGATCT 180
Query 200 CAATTACTTAACTCTGTTTCCTCCGACATGTTTATGAAGAAGACACATAAACTAAGCAAC 259
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CCATTACTTTACTCTGTTTCCTCCGACATGTTTATGAAGAAGACACATAAGCTAAGCAAC 240
Query 260 AAAGACATTCTTGGTTCTGGAGGATTTGGAACTGTGTACAGATTAGTCATTGATGATTCA 319
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGACATTCTCGGTTCTGGAGGATATGGAACTGTGTACAGATTAGTCATTGATGATTCA 300
Query 320 ACTACTTTTGCTGTGAAGAGGCTAAACAGAGGAACTTCTGAGAGAGACAGAGGGTTTCAT 379
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTACTTTTGCTGTGAAGAGACTAAACAGAGGAACTTCTGAGAGAGACAGAGGGTTTCAT 360
Query 380 AGAGAGTTAGAAGCAATGGCTGATATAAAACACAGAAACATTGTAACTCTTCATGGCTAC 439
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 361 AGAGAGTTAGAAGCAATGGCTGATATAAAACACAGAAACATTGTAACTCTCCACGGCTAC 420
Query 440 TTTACTTCTCCACATTACAATCTTCTCATCTATGAGCTCATGCCTAATGGGAGCTTGGAT 499
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 421 TTCACTTCTCCACATTACAATCTCCTCATCTATGAGCTCATGCCTAATGGAAGCTTGGAT 480
Query 500 TCTTTTCTACACGGAAGAAAAGCTTTGGATTGGGCGTCGAGATATAGAATCGCAGTAGGA 559
|||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || |||
Sbjct 481 TCTTTTCTACACGGTAGAAAAGCTTTGGATTGGGCGTCAAGATACAGAATAGCGGTTGGA 540
Query 560 GCGGCTAGAGGGATTTCGTACCTTCACCATGATTGCATTCCTCACATTATCCATAGAGAC 619
||||||||||||||||| || ||||| |||||||||| ||||| |||||||||||||||
Sbjct 541 GCGGCTAGAGGGATTTCTTATCTTCATTATGATTGCATCCCTCATATTATCCATAGAGAC 600
Query 620 ATCAAATCTAGCAACATACTTCTTGATCACAACATGGAAGCTAGGGTTTCTGATTTCGGT 679
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 ATCAAATCTAGCAACATACTTCTTGATCACAACATGGAAGCTAGGGTTTCGGATTTCGGT 660
Query 680 TTAGCCACTTTGATGGAGCCAGACAAGACTCATGTTTCGACTTTTGTGGCTGGAACATTC 739
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TTAGCCACTTTGATGGAGCCAGACAAGACTCATGTTTCGACTTTTGTAGCTGGAACATTC 720
Query 740 GGATATTTAGCTCCTGAGTATTTCGATACTGGAAAAGCGACAATGAAAGGAGATGTTTAC 799
||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 721 GGATACTTAGCTCCTGAGTATTTTGATACGGGTAAAGCGACAATGAAAGGAGATGTTTAC 780
Query 800 AGTTTCGGAGTTGTTCTGTTGGAGCTTTTAACTGGAAGAAAACCAACAGATGACGAGTTT 859
|||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 781 AGTTTCGGTGTTGTTCTTTTGGAGCTTTTAACCGGAAGAAAACCAACAGATGATGAGTTT 840
Query 860 TTCGAAGAAGGAACAAAGCTTGTTACTTGGGTTAAAGGAGTGGT-AAGAGACCAAAGAGA 918
|| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 841 TTTGAAGAAGGAACAAAGCTTGTTACTTGGGTAAAAGGAGTGGTGAA-AGACCAAAGAGA 899
Query 919 AGAGGTGGTGATAGATAACCGATTAAGAGGATCATCGGTTCAAGAGAATGAAGAGATGAA 978
||| ||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 900 AGATGTGGTGATAGATAACCGGTTAAGAGGATCATCGGTTCAAGAGA-TGAA-------- 950
Query 979 CGATGTGTTTGGTATAGCGATGATGTGTCTTGAACCCGAACCAGCAATTAGACCAGCCAT 1038
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 951 CGATGTGTTTGGTATAGCGATGATGTGTCTTGAACCCGAACCAGCCATTAGACCAACCAT 1010
Query 1039 GACTGAGGTTGTCAAATTGCTCGAATACATCAAACTTTCCACACGTTCCTCTTTTTGATG 1098
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1011 GACCGAGGTTGTCAAATTGCTCGAATACATCAAACTTTCCACACGTTCTTCTTTTTGATG 1070
Query 1099 TTTCTCTTGTCAAGAAAAATAATCAAATTCAGTTCCAAAATAAAGTTTTGCTGAAGAAAA 1158
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1071 TCTCTCTTGTCAATAAAAATAATCAAATTCAGTTCCAAA-TAAAGTTTTGCTGAAGAAAA 1129
Query 1159 A-GATTTCGAGAT-CTGCTTCTTTGA 1182
| ||||||||||| | ||||||||||
Sbjct 1130 AAGATTTCGAGATTC-GCTTCTTTGA 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5