BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78530.1 Length=1281 Score E Sequences producing significant alignments: (Bits) Value Ahg477017 jgi|Araly1|477017|fgenesh2_kg.2__2147__AT1G78530.1 1784 0.0 > Ahg477017 jgi|Araly1|477017|fgenesh2_kg.2__2147__AT1G78530.1 Length=1218 Score = 1784 bits (966), Expect = 0.0 Identities = 1102/1166 (95%), Gaps = 15/1166 (1%) Strand=Plus/Plus Query 20 AGAAAAACAATGGCTAATGCAAAGGAAACAACGTTTTATATAACAATCTCTGTGGTTGCT 79 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 AGAGAAACAATGACTAATGCAAAGGAAACAACGTTTTATATAACAATCTCTGTGGTTGTT 60 Query 80 TTTGTCATTGGCAAAATCGTAATCGCTCTTCTTTTCTACAAGAGATGGAAGAGAAAGCAC 139 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 61 TTTGTCATTGGCAAAATCGTAATCGCTGTTCTTCTCTACAAGAGATGGAAGAGAAAGCAC 120 Query 140 ACAATTCATGAAAATGGATTTCCAGTCAAAGGAGGAGGAAAAATGGTGATGTTTAGATCT 199 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACAGTTCATGAAAATGGATTTCCAGTCAAAGGAGGAGGAAAAATGGTGATGTTTAGATCT 180 Query 200 CAATTACTTAACTCTGTTTCCTCCGACATGTTTATGAAGAAGACACATAAACTAAGCAAC 259 | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CCATTACTTTACTCTGTTTCCTCCGACATGTTTATGAAGAAGACACATAAGCTAAGCAAC 240 Query 260 AAAGACATTCTTGGTTCTGGAGGATTTGGAACTGTGTACAGATTAGTCATTGATGATTCA 319 ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 AAAGACATTCTCGGTTCTGGAGGATATGGAACTGTGTACAGATTAGTCATTGATGATTCA 300 Query 320 ACTACTTTTGCTGTGAAGAGGCTAAACAGAGGAACTTCTGAGAGAGACAGAGGGTTTCAT 379 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 ACTACTTTTGCTGTGAAGAGACTAAACAGAGGAACTTCTGAGAGAGACAGAGGGTTTCAT 360 Query 380 AGAGAGTTAGAAGCAATGGCTGATATAAAACACAGAAACATTGTAACTCTTCATGGCTAC 439 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 361 AGAGAGTTAGAAGCAATGGCTGATATAAAACACAGAAACATTGTAACTCTCCACGGCTAC 420 Query 440 TTTACTTCTCCACATTACAATCTTCTCATCTATGAGCTCATGCCTAATGGGAGCTTGGAT 499 || |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 421 TTCACTTCTCCACATTACAATCTCCTCATCTATGAGCTCATGCCTAATGGAAGCTTGGAT 480 Query 500 TCTTTTCTACACGGAAGAAAAGCTTTGGATTGGGCGTCGAGATATAGAATCGCAGTAGGA 559 |||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || ||| Sbjct 481 TCTTTTCTACACGGTAGAAAAGCTTTGGATTGGGCGTCAAGATACAGAATAGCGGTTGGA 540 Query 560 GCGGCTAGAGGGATTTCGTACCTTCACCATGATTGCATTCCTCACATTATCCATAGAGAC 619 ||||||||||||||||| || ||||| |||||||||| ||||| ||||||||||||||| Sbjct 541 GCGGCTAGAGGGATTTCTTATCTTCATTATGATTGCATCCCTCATATTATCCATAGAGAC 600 Query 620 ATCAAATCTAGCAACATACTTCTTGATCACAACATGGAAGCTAGGGTTTCTGATTTCGGT 679 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 601 ATCAAATCTAGCAACATACTTCTTGATCACAACATGGAAGCTAGGGTTTCGGATTTCGGT 660 Query 680 TTAGCCACTTTGATGGAGCCAGACAAGACTCATGTTTCGACTTTTGTGGCTGGAACATTC 739 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 661 TTAGCCACTTTGATGGAGCCAGACAAGACTCATGTTTCGACTTTTGTAGCTGGAACATTC 720 Query 740 GGATATTTAGCTCCTGAGTATTTCGATACTGGAAAAGCGACAATGAAAGGAGATGTTTAC 799 ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 721 GGATACTTAGCTCCTGAGTATTTTGATACGGGTAAAGCGACAATGAAAGGAGATGTTTAC 780 Query 800 AGTTTCGGAGTTGTTCTGTTGGAGCTTTTAACTGGAAGAAAACCAACAGATGACGAGTTT 859 |||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||| Sbjct 781 AGTTTCGGTGTTGTTCTTTTGGAGCTTTTAACCGGAAGAAAACCAACAGATGATGAGTTT 840 Query 860 TTCGAAGAAGGAACAAAGCTTGTTACTTGGGTTAAAGGAGTGGT-AAGAGACCAAAGAGA 918 || ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 841 TTTGAAGAAGGAACAAAGCTTGTTACTTGGGTAAAAGGAGTGGTGAA-AGACCAAAGAGA 899 Query 919 AGAGGTGGTGATAGATAACCGATTAAGAGGATCATCGGTTCAAGAGAATGAAGAGATGAA 978 ||| ||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 900 AGATGTGGTGATAGATAACCGGTTAAGAGGATCATCGGTTCAAGAGA-TGAA-------- 950 Query 979 CGATGTGTTTGGTATAGCGATGATGTGTCTTGAACCCGAACCAGCAATTAGACCAGCCAT 1038 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 951 CGATGTGTTTGGTATAGCGATGATGTGTCTTGAACCCGAACCAGCCATTAGACCAACCAT 1010 Query 1039 GACTGAGGTTGTCAAATTGCTCGAATACATCAAACTTTCCACACGTTCCTCTTTTTGATG 1098 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1011 GACCGAGGTTGTCAAATTGCTCGAATACATCAAACTTTCCACACGTTCTTCTTTTTGATG 1070 Query 1099 TTTCTCTTGTCAAGAAAAATAATCAAATTCAGTTCCAAAATAAAGTTTTGCTGAAGAAAA 1158 | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1071 TCTCTCTTGTCAATAAAAATAATCAAATTCAGTTCCAAA-TAAAGTTTTGCTGAAGAAAA 1129 Query 1159 A-GATTTCGAGAT-CTGCTTCTTTGA 1182 | ||||||||||| | |||||||||| Sbjct 1130 AAGATTTCGAGATTC-GCTTCTTTGA 1154 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47882383752 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5