BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78540.2
Length=2478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477018 jgi|Araly1|477018|fgenesh2_kg.2__2148__AT1G78540.1 3400 0.0
Ahg494048 jgi|Araly1|494048|fgenesh2_kg.7__3481__AT1G17040.1 688 0.0
Ahg920610 jgi|Araly1|920610|scaffold_101891.1 562 4e-159
> Ahg477018 jgi|Araly1|477018|fgenesh2_kg.2__2148__AT1G78540.1
Length=2317
Score = 3400 bits (1841), Expect = 0.0
Identities = 2066/2173 (95%), Gaps = 21/2173 (1%)
Strand=Plus/Plus
Query 32 CACAAGACGCGACGCCGGAGAGAAAAA-GTCGAGGGATCAACACTTTCGACGATTTTTCA 90
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1 CACAAGACGCGACGCCGGAGAGAAAAAGGT-GAGGGATCAACACTTTCGACGATTTTTCA 59
Query 91 TTTCTCTTTTTAACTAATCGATAGGTCTGTAGTT-GTAACCAGCa-aaaaaaG-AGAGGG 147
|||||||||||| ||||||||| |||||||| || |||| || | ||||||| | ||||
Sbjct 60 TTTCTCTTTTTAGCTAATCGATGGGTCTGTA-TTCGTAA-CAATACAAAAAAGAAAAGGG 117
Query 148 TTTTCTTGGTTTATAAGGGTTTCGTATACAAAGTCGAG-----tttttttGGGGTGAAGT 202
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 118 TTTTCTGGGTTTATAAGGGTTTCGTATAC-AAGTCGAGTTTTTTTTTTTTGGGGTGAAGT 176
Query 203 AATGGCGAGTGCAGCTACAATTGAGACGGAGAAATACTCCT-TATTAGAAGATTTTAATG 261
||||||| ||| | |||||||||||||||||||||||| || | || |||||||||| ||
Sbjct 177 AATGGCGGGTGTATCTACAATTGAGACGGAGAAATACT-CTCTGTTGGAAGATTTTAGTG 235
Query 262 TTGATGTTGAAGTAGACGATGAAGAATACGAAAGTTTCTCCCTTTGTTTCTGGGTTTATC 321
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 236 TCGATGTTGAAGTAGATGATGAAGAATACGAAAGTTTCTCTCTTTGTTTCTGGGTTTATC 295
Query 322 TTCTTAATTCCACCACATTCCCATCTACCATCATTAGACAGGTTCACTCAGACATGAGTG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTCTTAATTCCACCACATTCCCATCTACCATCATTAGACAGGTTCACTCAGACATGAGTG 355
Query 382 TTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGATGATGCTTTTGCCATTGACTC 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGATGATGCTTTTGCCATTGACTC 415
Query 442 TCCTTCACAAGGAAGCTCCTGATCCTGTAGACACTTCTTCCTGGACACAAGTTCCTAGCG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCCTTCACAAGGAAGCTCCTGATCCTGTAGACACTTCTTCCTGGACACAAGTTCCTAGCG 475
Query 502 TTTCTACAAAATCCAAGTTTCCTCTTGAAAAATGGGTTCATGTGGGTTGTGAGGTTTCTA 561
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 476 TTTCTACAAAATCCAAGTTTCCTCTTCAAAAATGGGTTCATGTGGGTTGTGAGGTTTCTA 535
Query 562 GAAATTTTATGAGGCTTTTTATTGATGGAAATATGGAAGGAGAGCAGTTCGTGACTTCTT 621
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 536 GAAATTTCATGAGGCTTTTTATTGATGGAAATATTGAAGGAGAGCAGTTTGTGACTTCTT 595
Query 622 TGCTGACAAAGAACGCCTATCCCGAGTGTCCTCGAAAGATATCGCTATTTAGTGTTGGCG 681
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGCTGACAAAGAACACCAATCCCGAGTGTCCTCGAAAGATATCGCTATTTAGTGTTGGCG 655
Query 682 GAGATGGTTATAGCGTACAAGGTTTCATCCAATGTGCAGAAGTCTTACCTGCTAGTGATC 741
| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 656 GGGATGGTTATAGCGTTCAAGGTTTCATCCAATGTGCACAAGTCTTACCTGCTAGTGATC 715
Query 742 ACGTGGAGCATCATTATATGAAGGACCCACCTCTAATGTTATCTGTCAATAAATCATCCT 801
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 716 ATGTTGAGCATCATTATATGAAGGACCCACCTCTATTGTTATCTGTCAATAAATCATCCT 775
Query 802 CATCGGGGATCAAATTAGATGATTG-TGGTGTTTGGCAGGCATCTTGCAAGGAGATGTTT 860
||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||
Sbjct 776 CATCGGGGATCAAATTAGATGAT-GATGGTGTTTGGCAGGCATCTTGCAGGGAGATTTTT 834
Query 861 TCCTTGGATGTTCTTTTATCCAATGCCATTGGCCAGCCTGTGCACAAGGATGTGGAGGTT 920
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TCCTTGGATGTTGTTTTATCCAATGCCATTGGCCAGCCTGTGCACAAGGATGTGGAGGTT 894
Query 921 GTTGCATCACTACTGTATGCCGATACACTTCCGGAGGCCAAGATGGGTGAAGCTGAGGCT 980
|||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 895 GTTGCATCACTACTGTATGCCGATACACTTGTGGAGGCCAGGATGAGTGAAGCTGAGGCT 954
Query 981 CCTCTTTTGATAAGAGATGAAGGAGTTCAATTCTCATCTGATGATAGACCGATCAAACTA 1040
||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct 955 CCTCTTTTGGTAAGAGATGAAGGAGTTGAATTCTCATCTGGTGATAGACCGATCAAATTA 1014
Query 1041 TTAAATGGACGCTCATCCTTTAAGCTAAAGATCTCTCAGCTTTCCTCCAATAGTGATGAC 1100
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 1015 TTAAACGGACGCTCATCCTTTAAGCTCAAGATCTCTCAGCTTTCCTCCAAGAGTGATAAC 1074
Query 1101 AGATTGTTCTGGATTAAATTTGGAATACGAAATGCTAAAGATTATCCTTTCCTTCAAGCT 1160
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 AGATTGTTCTGGATTAAATTTGGAATACGAAATGCTAAAGATTATCCTTTTCTTCAAGCT 1134
Query 1161 GTTTCCAATCCAATCCGTTGCATTTCGGTCAGTCCTGAAGTCCAGCCAGTTTCAGTTACT 1220
||||||||||||||||||||||||||| |||||||||| |||| |||| |||| ||||||
Sbjct 1135 GTTTCCAATCCAATCCGTTGCATTTCGATCAGTCCTGATGTCCGGCCACTTTCTGTTACT 1194
Query 1221 CCGAAAAGGTTGACCAATATTGACCATCTATCAAGTACCGAATCCCCGGATCTTCTACAG 1280
||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1195 CCGAAAAGGTTGACCAACATTGACCATCTATCAAGTACCGAGTCTCCGGACCTTCTACAT 1254
Query 1281 AACACTTCGTCAGTTAAACGAATCAGGTTGGGAAAAGAAAGTGTTTCTGGAAGCGAGGAA 1340
||| | || ||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 1255 AACGCGTCCTCAGTTAAACGAATCAGGTTGGGCAAAGAAAGTGTTTCGGGGAGCGAGGAA 1314
Query 1341 TCATATCAACAATGCAACTCTCATCCTCAAACCTCGAGACAGTTTGAGAACGGAAATGGC 1400
|||||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||
Sbjct 1315 TCATATCAACAATGCAACTCTCGTCCCCAAACCTCAAGACAGTTTGAGAATGGAAATGGC 1374
Query 1401 ATGAGATTGCACGAAGAAGATAACTCCTCAATTGATTCAGAGAACTCGGAAATGAGATAC 1460
|||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 1375 ATGAGATTGCACGAAGAAGATAACTCTTCAACTGATTCAGAAAACTCGGAAATGAGATAT 1434
Query 1461 ACAATCTCAGATTCCACCATCTTTA-AGTACTGCCTTGGAAACTTAATCGACAAAGCTCT 1519
||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||
Sbjct 1435 ACAATCTCAGATTCCACCATCTTTAGA-TACTGCCTTGGAAACATAATCGACAAATCTCT 1493
Query 1520 ACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTTGCAAATCA 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 ACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTTGCAAATCA 1553
Query 1580 GGTTTCTCTGTACTCTGGATGTTCACACCATAGCTATCAAATCAACATGGCAAGAGAGCT 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GGTTTCTCTGTACTCTGGATGTTCACACCATAGCTATCAAATCAACATGGCAAGAGAGCT 1613
Query 1640 AATAGCAGAAGGAACAAATGCATGGATATTGATATCTCGGAACAATCAACATGTTCATTG 1699
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1614 AATAGCTGAAGGAACAAATGCCTGGATATTGATATCTCGGAACAATCAACATGTTCTTTG 1673
Query 1700 GGATAATGTGGTCTATGAGATTGAAGAACATTTCATGAGGATTTCAAAATGCAGCAGTAG 1759
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GGACAATGTGGTCTATGAGATTGAAGAACATTTCATGAGGATTTCAAAATGCAGCAGTAG 1733
Query 1760 ATCTCTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGCTACGAGTACAT 1819
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1734 ATCACTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGCTACGAGTACGT 1793
Query 1820 AACTCAGGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTTACTCCATATC 1879
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 AACTCAGGTGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTTACTCCATATC 1853
Query 1880 CCGGGGCTTGATAAACGGAATGTGGCGTTCTTCATCGCCTAAATGGATTGAAGGATTCAT 1939
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1854 CCGGGGATTGATAAACGGAATGTGGCGTTCTTCGTCGCCTAAATGGATTGAAGGATTCAT 1913
Query 1940 CACCAAGGAAGAAGCTGAACATTCGCTTCAAGGCCAAGAACCAGGAACCTTCATACTACG 1999
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1914 CACTAAGGAAGAGGCTGAACATTCGCTTCAAGGCCAAGAACCTGGAACCTTCATACTCCG 1973
Query 2000 TTTCCCTATTTCAAGAA-CTTGGCCTCACCCTGATGCTGGTAGTTTGGTTGTGACTTATG 2058
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TTTCCCTATTTCAAGAATCT-GGCCTCACCCTGATGCTGGTAGTTTGGTTGTGACTTATG 2032
Query 2059 TCGGTCATGATTTCGCTCTTCATCATAAGCAACTCAAGATCGATAACATCTGCGAAAGTA 2118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 TTGGTCATGATTTCGCTCTTCATCATAAGCAACTCAAGATCGATAACATCTGCGAAAGTA 2092
Query 2119 GTGAAAGGTACATGGATGCAAAACCGCTGCAGGATATGTTGTTGGCTGAACCTGAGCTCT 2178
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2093 GTGAAAGGTACATGGATGCAAAACCGCTGCAAGATATGTTGTTGGCTGAACCGGAGCTCT 2152
Query 2179 CTCGGTTAGGAAG 2191
||||| |||||||
Sbjct 2153 CTCGGCTAGGAAG 2165
> Ahg494048 jgi|Araly1|494048|fgenesh2_kg.7__3481__AT1G17040.1
Length=2337
Score = 688 bits (372), Expect = 0.0
Identities = 629/751 (84%), Gaps = 26/751 (3%)
Strand=Plus/Plus
Query 1454 GAGATACACAATCTCAGATTCCACCATCTTT-AAGTACTGCCTTGGAAACTTAATC-GAC 1511
|||||| ||||||||||| || | || ||| || ||||||||||||||||||| | ||
Sbjct 1424 GAGATATACAATCTCAGACTCGATTAT-TTTCAAATACTGCCTTGGAAACTTAA-CAGAG 1481
Query 1512 AAAGCTCTACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTT 1571
| |||||| ||||| |||||||||||||| || |||||||| || ||||| | |||||||
Sbjct 1482 AGAGCTCTTCTTCTGAAGGAAATCACAAATAATTCATCAGATGAAGAAGTCTCGGAATTT 1541
Query 1572 GCAAATCAGGTTTCTCTGTACTCTGGATG-TTCACACCATAGCTATCAAATCAACATGGC 1630
| | |||| |||||||| || || ||||| ||| ||||| |||||||||||||| |||||
Sbjct 1542 GTAGATCAAGTTTCTCTCTATTCCGGATGCTTC-CACCACAGCTATCAAATCAAAATGGC 1600
Query 1631 AAGAGAGCTAATAGCAGAAGGAACAAATGCATGGATAT-TGATATCTCGGAACAATCAAC 1689
|||| | | |||||||||||||||||||| |||| || |||||||||||||| ||||||
Sbjct 1601 AAGACAATTGATAGCAGAAGGAACAAATGCGTGGA-ATCTGATATCTCGGAACTATCAAC 1659
Query 1690 ATGTTCATTGGGATAATGTGGTCTA-TGAGATTGAAGAACATTTCATGAGGATTTCAAAA 1748
||||||||||||| |||||||| | |||||||||||||||||||||||| || | |||
Sbjct 1660 ATGTTCATTGGGACAATGTGGT-AATTGAGATTGAAGAACATTTCATGAGAATAGCTAAA 1718
Query 1749 TGCAGCAGTAGATCTCTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGC 1808
|||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct 1719 TGCAGCAGTAGATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGAATATGTGGATGC 1778
Query 1809 TACGAGTACATAACTCAGGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCT 1868
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 TATGAATACATAACTCAAGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCT 1838
Query 1869 TACTCC-ATATCCCGGGGCTTGATAAACGGAATGTGGCGTTCTTCATCGCCTAAATGGAT 1927
| | | |||||| |||| ||||| |||||||||||||| || | ||||||||||||||
Sbjct 1839 T-CGGCTATATCCAGGGGATTGATTAACGGAATGTGGCGCTCAGCTTCGCCTAAATGGAT 1897
Query 1928 TGAAGGATTCATCACCAAGGAAGAAGCTGAACATTCGCTTCA-AGGCCAAGAACCAGGAA 1986
||||| || | || || ||||| || |||| ||||||||| | | ||| | | ||||
Sbjct 1898 AGAAGGGTTTGTGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATC-AAGTAGCGGGAA 1956
Query 1987 CCTTCATACT-ACGTTTCCCTATTTCAAGAA-CTTGGCCTCACCCTGATGCTGGTAGTTT 2044
| ||||| || | ||| ||||| |||||||| || |||| || |||||||||||| ||
Sbjct 1957 CTTTCATTCTCAGGTT-CCCTACTTCAAGAAGCT-GGCCACATCCTGATGCTGGTTCCTT 2014
Query 2045 GGTTGTGACTTATGTCGGTCATGATTTCGCTCTTCATCATA-AGCAACTCA-AGATCGAT 2102
||||||||||||||||||||||||||| | | ||||||||| | | ||| | |||| |
Sbjct 2015 GGTTGTGACTTATGTCGGTCATGATTTAGTTATTCATCATAGATTA-CTCGCA-ATCGGT 2072
Query 2103 AACATCTGCGAAAGTAGTGAAAGGTACATGGATGCAAAACCGCTGCAGGATATG-TTGTT 2161
|||||||||| |||||||||||| | |||||||||||| |||| |||||| || ||
Sbjct 2073 CACATCTGCGATTCTAGTGAAAGGTATACAGATGCAAAACCGTTGCAAGATATGCTT-TT 2131
Query 2162 GGCTGAACCTGAGCTCTCTCGG-TTAGGAAG 2191
||| ||||||||||| || ||| || |||||
Sbjct 2132 GGCGGAACCTGAGCTATCCCGGCTT-GGAAG 2161
Score = 664 bits (359), Expect = 0.0
Identities = 858/1087 (79%), Gaps = 81/1087 (7%)
Strand=Plus/Plus
Query 148 TTTTCTTGGTTTATAAGGGTTTCG-TATACAAAGTC--GAG---ttt-ttttGGGGTGAA 200
|||||| ||||| ||||||||||| | | ||||||| ||| ||| |||| |||||
Sbjct 192 TTTTCTGGGTTT-TAAGGGTTTCGCT-TGCAAAGTCGAGAGCTTTTTCTTTTTGGGTG-G 248
Query 201 G-T--AATGGCGAGTGCA--GCTACAATTGAGACGGAGAAATACTCCT-TATTAGAAGAT 254
| | ||||||| ||| | | | ||||||| || |||||||||| || | || || |||
Sbjct 249 GTTACAATGGCGGGTG-ATTG-TGCAATTGACACCGAGAAATACT-CTCTGTTGGAGGAT 305
Query 255 TTTAATGTTGATGTTGAAGTAGACGATGAAGAATACGAAAGTTTCTCCCTTTGTTTCTGG 314
|||||||| ||||||||||| || | ||| | || | |||||| |||||||| |||
Sbjct 306 TTTAATGTCGATGTTGAAGTCGAAAACAAAGCTTTTGAGACTTTCTCGCTTTGTTTTTGG 365
Query 315 GTTTATCTTCTTA-ATTCCACCACATTCCCATCTACCATCATTAGACAGGTTCACTCAGA 373
||||||| ||||| |||||||||||| ||| ||||| || || |||||||||||||| ||
Sbjct 366 GTTTATC-TCTTAGATTCCACCACATACCCTTCTACAATTATCAGACAGGTTCACTCTGA 424
Query 374 CATGAGTGTTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGATGATGCTTTTGCC 433
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 425 CATGAGCGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGATGATGCTTTTGCC 484
Query 434 ATTGACTCTCCTTCACAAGGAAGCTCCTGATCCTGT-AGACACTTCTTCCTGGACACAAG 492
|||||||||||||||||| ||||||||||||||||| | ||| |||||| ||||| |||
Sbjct 485 ATTGACTCTCCTTCACAATGAAGCTCCTGATCCTGTTA-ACATTTCTTCTTGGACTGAAG 543
Query 493 TTCCTAGCGTTTCTACAAAATCCA-AGTTTCCTCTTGAAAAATGGGTTCATGTGGGTTGT 551
|||||| |||||||||| | | ||||||||||| ||||||||||||||||||||||
Sbjct 544 TTCCTAATGTTTCTACAAC-TGCTGAGTTTCCTCTTCAAAAATGGGTTCATGTGGGTTGC 602
Query 552 GAGGTTTCTAGAAATTTTATGAGGCTTTTTATT-GATGGAAATATGGAAGGAGAGCA-GT 609
|||||||||||||| | ||| | |||| |||| | |||| | || | ||||||||| ||
Sbjct 603 GAGGTTTCTAGAAACTACATGCGCCTTTATATTTG-TGGAGAGATTGTAGGAGAGCAAGT 661
Query 610 TCGTGACTTCTTTGCTGAC-AA-AGAACGCCTATCCCGAGTGTC-CTCGAAAGATATCGC 666
| | ||||| ||| |||| || || || | || || || | | ||||||||||||
Sbjct 662 -CTTAACTTCCTTGATGACCAATAGTACAAAT-TCA-GATTG-CGCACGAAAGATATCGT 717
Query 667 TATTTAGTGTTGGCGGAGATGGTTATAGCGTACAAGGTTTCATCCAATGTGCAGAAGTCT 726
|||| |||||||| |||||||||||||| || || ||||||||||| ||||| ||||| |
Sbjct 718 TATTCAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACTGTGCTGAAGTTT 777
Query 727 TACCTGCTAGTGATCACGTGGAGC--ATCATTATATGAAGGACCCACCTCTAATG-TTAT 783
| ||| ||| || || || | | |||| || | |||||||||||| || || ||||
Sbjct 778 TGCCTTCTAATG-TCCCG-GCAAATTATCACTACACAAAGGACCCACCTTTA-TGGTTAT 834
Query 784 CTGTCAATAAATCATCCT-CATCGGGGATCAAATTAGATGATTG-TGGTGTTTGGCAGGC 841
|||| |||| |||| | |||| || || ||||||| | | |||||||||| |
Sbjct 835 CTGTTGATAAGCCATC-TACATCTGGAATTGGATTAGATAAA-GATGGTGTTTGG-ATT- 890
Query 842 ATC-TT-GCAAGGAG-ATGTT-TTCCTTGGATGTTCTTTTATCCAATGCCATTGGCCAGC 897
||| || || ||| || || ||||||||||||| ||||| ||||||| ||||| ||||
Sbjct 891 ATCGTTAGC--GGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGC 948
Query 898 CTGTGCACAAGGATGTGGAGGTTGTTGCATCACTACTGTATGCCGATACACT--T-CCGG 954
||||||||||||||||| ||||||| || || ||||||||||| |||| | || |
Sbjct 949 CTGTGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGATGCCAG 1008
Query 955 AGGCCAAGATGGGTGAAGCTGAGGCTCCTCTTTTGATAAGAGATGAAGGAGTTCAATTCT 1014
| |||||| |||| | |||||||| |||||| |||| ||||||||||| ||||||
Sbjct 1009 TTGAGAAGATGAGTGACTCGGAGGCTCCCCTTTTGGTAAGCTATGAAGGAGTTGAATTCT 1068
Query 1015 CAT-CTGATGATA-GACCGAT-CAAACT-ATTAAATGGACGCT-CATCCTTT-AAGCTAA 1068
| | |||| |||| | || || ||| || ||| || ||| | | | || ||| ||||| |
Sbjct 1069 C-TGCTGAAGATAAG-CC-ATGCAA-CTTATTGAACGGATG-TGCTTC-TTTCAAGCTCA 1122
Query 1069 AGATC-TCTCAGCTTTCCTCCAATAGTGATGACAGATTGTTCTG-GATTAAATTTGGAAT 1126
| || ||||||||||| ||||| |||||| | ||||||||||| | | ||||| | |||
Sbjct 1123 A-ATTATCTCAGCTTTCTTCCAAGAGTGATAAGAGATTGTTCTGTG-TCAAATTCGAAAT 1180
Query 1127 ACGA-AATGCTAAAG----ATTATCCTTTCCTTCAAGCTGTTTCCAATCCAA-TCCGTTG 1180
|| | || | | ||| |||||||||||||| || ||||| |||| |||| |||||||
Sbjct 1181 ACCAGAA-G-TGAAGGCCTATTATCCTTTCCTTGAAACTGTTACCAA-CCAAATCCGTTG 1237
Query 1181 CATTTCG 1187
|||||||
Sbjct 1238 CATTTCG 1244
> Ahg920610 jgi|Araly1|920610|scaffold_101891.1
Length=2639
Score = 562 bits (304), Expect = 4e-159
Identities = 497/589 (84%), Gaps = 18/589 (3%)
Strand=Plus/Plus
Query 1454 GAGATACACAATCTCAGATTCCACCATCTTT-AAGTACTGCCTTGGAAACTTAATC-GAC 1511
|||||| ||||||||||| || | || ||| || ||||||||||||||||||| | ||
Sbjct 1131 GAGATATACAATCTCAGACTCGATTAT-TTTCAAATACTGCCTTGGAAACTTAA-CAGAG 1188
Query 1512 AAAGCTCTACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTT 1571
| |||||| ||||| |||||||||||||| || |||||||| || ||||| | |||||||
Sbjct 1189 AGAGCTCTTCTTCTGAAGGAAATCACAAATAATTCATCAGATGAAGAAGTCTCGGAATTT 1248
Query 1572 GCAAATCAGGTTTCTCTGTACTCTGGATG-TTCACACCATAGCTATCAAATCAACATGGC 1630
| | |||| |||||||| || || ||||| ||| ||||| |||||||||||||| |||||
Sbjct 1249 GTAGATCAAGTTTCTCTCTATTCCGGATGCTTC-CACCACAGCTATCAAATCAAAATGGC 1307
Query 1631 AAGAGAGCTAATAGCAGAAGGAACAAATGCATGGATAT-TGATATCTCGGAACAATCAAC 1689
|||| | | |||||||||||||||||||| |||| || |||||||||||||| ||||||
Sbjct 1308 AAGACAATTGATAGCAGAAGGAACAAATGCGTGGA-ATCTGATATCTCGGAACTATCAAC 1366
Query 1690 ATGTTCATTGGGATAATGTGGTCTA-TGAGATTGAAGAACATTTCATGAGGATTTCAAAA 1748
||||||||||||| |||||||| | |||||||||||||||||||||||| || | |||
Sbjct 1367 ATGTTCATTGGGACAATGTGGT-AATTGAGATTGAAGAACATTTCATGAGAATAGCTAAA 1425
Query 1749 TGCAGCAGTAGATCTCTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGC 1808
|||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct 1426 TGCAGCAGTAGATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGAATATGTGGATGC 1485
Query 1809 TACGAGTACATAACTCAGGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCT 1868
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TATGAATACATAACTCAAGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCT 1545
Query 1869 TACTCC-ATATCCCGGGGCTTGATAAACGGAATGTGGCGTTCTTCATCGCCTAAATGGAT 1927
| | | |||||| |||| ||||| |||||||||||||| || | ||||||||||||||
Sbjct 1546 T-CGGCTATATCCAGGGGATTGATTAACGGAATGTGGCGCTCAGCTTCGCCTAAATGGAT 1604
Query 1928 TGAAGGATTCATCACCAAGGAAGAAGCTGAACATTCGCTTCA-AGGCCAAGAACCAGGAA 1986
||||| || | || || ||||| || |||| ||||||||| | | ||| | | ||||
Sbjct 1605 AGAAGGGTTTGTGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATC-AAGTAGCGGGAA 1663
Query 1987 CCTTCATACT-ACGTTTCCCTATTTCAAGAA-CTTGGCCTCACCCTGAT 2033
| ||||| || | ||| ||||| |||||||| || |||| || ||||||
Sbjct 1664 CTTTCATTCTCAGGTT-CCCTACTTCAAGAAGCT-GGCCACATCCTGAT 1710
Score = 549 bits (297), Expect = 3e-155
Identities = 683/861 (79%), Gaps = 60/861 (7%)
Strand=Plus/Plus
Query 360 CAGGTTCACTCAGACATGAGTGTTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAG 419
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 7 CAGGTTCACTCTGACATGAGCGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAG 66
Query 420 ATGATGCTTTTGCCATTGACTCTCCTTCACAAGGAAGCTCCTGATCCTGT-AGACACTTC 478
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||
Sbjct 67 ATGATGCTTTTGCCATTGACTCTCCTTCACAATGAAGCTCCTGATCCTGTTA-ACATTTC 125
Query 479 TTCCTGGACACAAGTTCCTAGCGTTTCTACAAAATCCA-AGTTTCCTCTTGAAAAATGGG 537
||| ||||| ||||||||| |||||||||| | | ||||||||||| |||||||||
Sbjct 126 TTCTTGGACTGAAGTTCCTAATGTTTCTACAAC-TGCTGAGTTTCCTCTTCAAAAATGGG 184
Query 538 TTCATGTGGGTTGTGAGGTTTCTAGAAATTTTATGAGGCTTTTTATT-GATGGAAATATG 596
||||||||||||| |||||||||||||| | ||| | |||| |||| | |||| | ||
Sbjct 185 TTCATGTGGGTTGCGAGGTTTCTAGAAACTACATGCGCCTTTATATTTG-TGGAGAGATT 243
Query 597 GAAGGAGAGCA-GTTCGTGACTTCTTTGCTGAC-AA-AGAACGCCTATCCCGAGTGTC-C 652
| ||||||||| || | | ||||| ||| |||| || || || | || || || | |
Sbjct 244 GTAGGAGAGCAAGT-CTTAACTTCCTTGATGACCAATAGTACAAAT-TCA-GATTG-CGC 299
Query 653 TCGAAAGATATCGCTATTTAGTGTTGGCGGAGATGGTTATAGCGTACAAGGTTTCATCCA 712
|||||||||||| |||| |||||||| |||||||||||||| || || |||||||||||
Sbjct 300 ACGAAAGATATCGTTATTCAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCA 359
Query 713 ATGTGCAGAAGTCTTACCTGCTAGTGATCACGTGGAGC--ATCATTATATGAAGGACCCA 770
||||| ||||| || ||| ||| || || || | | |||| || | |||||||||
Sbjct 360 CTGTGCTGAAGTTTTGCCTTCTAATG-TCCCG-GCAAATTATCACTACACAAAGGACCCA 417
Query 771 CCTCTAATG-TTATCTGTCAATAAATCATCCT-CATCGGGGATCAAATTAGATGATTG-T 827
||| || || |||||||| |||| |||| | |||| || || ||||||| | | |
Sbjct 418 CCTTTA-TGGTTATCTGTTGATAAGCCATC-TACATCTGGAATTGGATTAGATAAA-GAT 474
Query 828 GGTGTTTGGCAGGCATC-TT-GCAAGGAG-ATGTT-TTCCTTGGATGTTCTTTTATCCAA 883
||||||||| | ||| || || ||| || || ||||||||||||| ||||| ||||
Sbjct 475 GGTGTTTGG-ATT-ATCGTTAGC--GGAACATTTTGTTCCTTGGATGTTGTTTTAACCAA 530
Query 884 TGCCATTGGCCAGCCTGTGCACAAGGATGTGGAGGTTGTTGCATCACTACTGTATGCCGA 943
||| ||||| ||||||||||||||||||||| ||||||| || || ||||||||||| ||
Sbjct 531 TGCTATTGGACAGCCTGTGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGA 590
Query 944 TACACT--T-CCGGAGGCCAAGATGGGTGAAGCTGAGGCTCCTCTTTTGATAAGAGATGA 1000
|| | || | | |||||| |||| | |||||||| |||||| |||| ||||
Sbjct 591 TAGTGGGATGCCAGTTGAGAAGATGAGTGACTCGGAGGCTCCCCTTTTGGTAAGCTATGA 650
Query 1001 AGGAGTTCAATTCTCAT-CTGATGATA-GACCGAT-CAAACT-ATTAAATGGACGCT-CA 1055
||||||| ||||||| | |||| |||| | || || ||| || ||| || ||| | | |
Sbjct 651 AGGAGTTGAATTCTC-TGCTGAAGATAAG-CC-ATGCAA-CTTATTGAACGGATG-TGCT 705
Query 1056 TCCTTT-AAGCTAAAGATC-TCTCAGCTTTCCTCCAATAGTGATGACAGATTGTTCTG-G 1112
|| ||| ||||| || || ||||||||||| ||||| |||||| | ||||||||||| |
Sbjct 706 TC-TTTCAAGCTCAA-ATTATCTCAGCTTTCTTCCAAGAGTGATAAGAGATTGTTCTGTG 763
Query 1113 ATTAAATTTGGAATACGA-AATGCTAAAG----ATTATCCTTTCCTTCAAGCTGTTTCCA 1167
| ||||| | ||||| | || | | ||| |||||||||||||| || ||||| |||
Sbjct 764 -TCAAATTCGAAATACCAGAA-G-TGAAGGCCTATTATCCTTTCCTTGAAACTGTTACCA 820
Query 1168 ATCCAA-TCCGTTGCATTTCG 1187
| |||| ||||||||||||||
Sbjct 821 A-CCAAATCCGTTGCATTTCG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93397280740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5