BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78550.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477019 jgi|Araly1|477019|fgenesh2_kg.2__2149__AT1G78550.1 1855 0.0
> Ahg477019 jgi|Araly1|477019|fgenesh2_kg.2__2149__AT1G78550.1
Length=1279
Score = 1855 bits (1004), Expect = 0.0
Identities = 1188/1275 (93%), Gaps = 19/1275 (1%)
Strand=Plus/Plus
Query 33 ttcaatttttgttcgtttttttcttcCGGAAAATTGGTTGTTGGGTGGATCAAAGCTTAC 92
||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 19 TTCGATTTTTGTTCGTTTTTTTTTTGCGGAAAATTGGTTGTTGGGTGGATCAAAGCTTAC 78
Query 93 GAGATTTGTACTTTTGTTCTGGTGCTAC-AAGTCCAATGGAGGCGGAAGGAG-A-AAA-A 148
|||||||| || |||| ||||||||| |||||| |||||||| |||||| | ||| |
Sbjct 79 GAGATTTG---TTCTGTTTTGGTGCTACAAAGTCC-ATGGAGGCCCAAGGAGAAGAAAGA 134
Query 149 CAGTGGAGTTCTCTCATAGTACCTTTTGTTCTAGAGATAGTGAAAGAGAAGAACTTCACA 208
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 135 CAGTGGAGTTCTCTCATAGTACCTTCTGTTCTAGAGATAGTGAAAGAGAAGAACTTCACA 194
Query 209 ACTATTCCTCCGAGGTATGTTCGGGTTGATCAAGAAAAAACTGAGATCTTAAATGATTCT 268
||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 195 ACTGTTCCTCCGAGATATGTTCGACCTGATCAAGGAAAAACTGAGATCTTAAATGATTCT 254
Query 269 AGTCTTAGTTCTGAGATTCCAGTCATCGACATGACACGGTTGTGTTCTGTTTCCGCCATG 328
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 255 AGTCTTAGTTCTGATATTCCAGTCATCGACATGAAACGGTTGTGTTCTGTTTCCGCCATG 314
Query 329 GATTCCGAGCTCAAGAAGCTGGATTTCGCTTGCCAAGATTGGGGATTTTTTCAATTGGTA 388
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 315 GATTCCGAGCTCAAGAAGCTCGATTTCGCTTGCCAAGATTGGGGATTTTTTCAACTGGTG 374
Query 389 AACCATGGAATAGACTCGTCTTTCTTGGAAAAACTAGAGACAGAAGTTCAAGAATTCTTC 448
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 375 AACCATGGAATAGACTCGTCTTTCTTGGAAAAATTAGAGACAGAGGTTCAAGAATTCTTC 434
Query 449 AATCTCCCTATGAAAGAGAAGCAGAAGTTGTGGCAGAGAAGTGGTGAATTTGAAGGATTT 508
|||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 435 AATCTCCCTATGGAAGAGAAGCAGAAGCTGTGGCAGAGAAATGGTGAATTTGAAGGATTC 494
Query 509 GGACAAGTGAACATTGTCTCGGAGAATCAGAAACTCGATTGGGGAGACATGTTTATCCTC 568
|||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||
Sbjct 495 GGACAAGTGAACATTGTCTCGGAGGATCAAAAACTTGACTGGGGAGACATGTTCATCCTC 554
Query 569 ACCACTGAACCAATTCGATCACGTAAATCTCACTTGTTCTCCAAATTACCTCCTCCTTTC 628
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 555 ACCACTGAACCAATTCGGTCACGTAAATCTCACTTGTTCTCCAAATTACCTCCTTCTTTC 614
Query 629 AGAGAAACTTTAGAGACTTACTCCTCTGAAGTGAAGAGCATAGCTAAGATTCTGTTTGCG 688
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 615 AGAGAAACTTTAGAGACTTACTCCTCTCAAGTGAAGAGCATAGCTAAGATTCTTTTTGCG 674
Query 689 AAAATGGCGAGTGTTCTAGAGATCAAACACGAAGAAATGGAAGATTTGTTTGATGATGTT 748
||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||
Sbjct 675 AAAATGGCGAGTGTTCTTGAGATCAAACGCGAAGAAATGGAAGATTTGTTCGAGGATGTT 734
Query 749 TGGCAATCTATCAAGATTAATTACTACCCGCCATGTCCACAGCCAGATCAAGTTATGGGT 808
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 735 TGGCAATCTATCAAGATTAATTACTACCCACCATGTCCACAACCAGATCAAGTTATCGGT 794
Query 809 TTGACTCAACATTCAGACGCTGCAGGTCTCACAATACTCTTACAGGTGAATCAAGTGGAA 868
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 795 TTGACTCCACATTCAGACGCTGCAGGTCTCACAATACTATTACAGGTGAATCAAGTGGAA 854
Query 869 GGACTTCAGATCAAGAAAGACGGCAAGTGGGTTGTCGTAAAACCTCTTCGAGATGCTTTA 928
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGACTTCAGATCAAGAAACACGGCAAGTGGGTTGTCGTAAAACCTCTTCGAGATGCTTTA 914
Query 929 GTTGTTAATGTTGGCGAAATCTTAGAGATCATAACAAACGGGAGATATCGAAGCATCGAG 988
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GTTGTTAATGTTGGAGAAATCTTAGAGATCATAACAAACGGGAGATATCGAAGCATCGAG 974
Query 989 CATAGAGCGGTGGTGAATTCAGAGAAAGAGAGGTTATCGGTTGCGATGTTTCATAGTCCC 1048
|||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 975 CATAGAGCAGTGGTGAATTCAGAAAAAGAGAGGTTATCGGTTGCGGTATTTCATAGTCCG 1034
Query 1049 GGAAAGGAGACAATCATTCGTCCTGCGAAAAGCCTTGTAGATAGGCAGAAGCAATGTTTG 1108
|||||||||||| | ||| |||| |||||||||||||||||||||||||||||| | |||
Sbjct 1035 GGAAAGGAGACAGTAATTGGTCCGGCGAAAAGCCTTGTAGATAGGCAGAAGCAAAGCTTG 1094
Query 1109 TTCAAAAGTATGAGCACACAAGAGTACTTTGATGCCTTCTTTACTCAAAAACTCAATGGG 1168
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1095 TTCAAAAGTATGAGCACACAAGAGTACTTTGATGCCTTCTTTGCTCAGAAACTCAATGGA 1154
Query 1169 AAATCTCACCTTGATCTTATGCGTATTTAAGGAAAAAGACTCTCATAAAACATGTTT-CT 1227
||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |
Sbjct 1155 AAATCTCACCTTGATCTTATGCGTATTTAAGGACAA-GACCCTCATAAAACATGTAGACC 1213
Query 1228 TCGTAATTTTGTAATTAAGAGAAATCTTTCATCTTGCTTCTTGTCATTAAAGACATTAAT 1287
|||||| ||||||||||||||||||| | || || | ||||||||||||||||||
Sbjct 1214 TCGTAAATTTGTAATTAAGAGAAATCAT--AT-TT--T----GTCATTAAAGACATTAAT 1264
Query 1288 ACACACGCTTTAATT 1302
||| ||||| |||||
Sbjct 1265 ACATACGCTCTAATT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5