BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78550.1 Length=1302 Score E Sequences producing significant alignments: (Bits) Value Ahg477019 jgi|Araly1|477019|fgenesh2_kg.2__2149__AT1G78550.1 1855 0.0 > Ahg477019 jgi|Araly1|477019|fgenesh2_kg.2__2149__AT1G78550.1 Length=1279 Score = 1855 bits (1004), Expect = 0.0 Identities = 1188/1275 (93%), Gaps = 19/1275 (1%) Strand=Plus/Plus Query 33 ttcaatttttgttcgtttttttcttcCGGAAAATTGGTTGTTGGGTGGATCAAAGCTTAC 92 ||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 19 TTCGATTTTTGTTCGTTTTTTTTTTGCGGAAAATTGGTTGTTGGGTGGATCAAAGCTTAC 78 Query 93 GAGATTTGTACTTTTGTTCTGGTGCTAC-AAGTCCAATGGAGGCGGAAGGAG-A-AAA-A 148 |||||||| || |||| ||||||||| |||||| |||||||| |||||| | ||| | Sbjct 79 GAGATTTG---TTCTGTTTTGGTGCTACAAAGTCC-ATGGAGGCCCAAGGAGAAGAAAGA 134 Query 149 CAGTGGAGTTCTCTCATAGTACCTTTTGTTCTAGAGATAGTGAAAGAGAAGAACTTCACA 208 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 135 CAGTGGAGTTCTCTCATAGTACCTTCTGTTCTAGAGATAGTGAAAGAGAAGAACTTCACA 194 Query 209 ACTATTCCTCCGAGGTATGTTCGGGTTGATCAAGAAAAAACTGAGATCTTAAATGATTCT 268 ||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||||| Sbjct 195 ACTGTTCCTCCGAGATATGTTCGACCTGATCAAGGAAAAACTGAGATCTTAAATGATTCT 254 Query 269 AGTCTTAGTTCTGAGATTCCAGTCATCGACATGACACGGTTGTGTTCTGTTTCCGCCATG 328 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 255 AGTCTTAGTTCTGATATTCCAGTCATCGACATGAAACGGTTGTGTTCTGTTTCCGCCATG 314 Query 329 GATTCCGAGCTCAAGAAGCTGGATTTCGCTTGCCAAGATTGGGGATTTTTTCAATTGGTA 388 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 315 GATTCCGAGCTCAAGAAGCTCGATTTCGCTTGCCAAGATTGGGGATTTTTTCAACTGGTG 374 Query 389 AACCATGGAATAGACTCGTCTTTCTTGGAAAAACTAGAGACAGAAGTTCAAGAATTCTTC 448 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 375 AACCATGGAATAGACTCGTCTTTCTTGGAAAAATTAGAGACAGAGGTTCAAGAATTCTTC 434 Query 449 AATCTCCCTATGAAAGAGAAGCAGAAGTTGTGGCAGAGAAGTGGTGAATTTGAAGGATTT 508 |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 435 AATCTCCCTATGGAAGAGAAGCAGAAGCTGTGGCAGAGAAATGGTGAATTTGAAGGATTC 494 Query 509 GGACAAGTGAACATTGTCTCGGAGAATCAGAAACTCGATTGGGGAGACATGTTTATCCTC 568 |||||||||||||||||||||||| |||| ||||| || |||||||||||||| |||||| Sbjct 495 GGACAAGTGAACATTGTCTCGGAGGATCAAAAACTTGACTGGGGAGACATGTTCATCCTC 554 Query 569 ACCACTGAACCAATTCGATCACGTAAATCTCACTTGTTCTCCAAATTACCTCCTCCTTTC 628 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 555 ACCACTGAACCAATTCGGTCACGTAAATCTCACTTGTTCTCCAAATTACCTCCTTCTTTC 614 Query 629 AGAGAAACTTTAGAGACTTACTCCTCTGAAGTGAAGAGCATAGCTAAGATTCTGTTTGCG 688 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 615 AGAGAAACTTTAGAGACTTACTCCTCTCAAGTGAAGAGCATAGCTAAGATTCTTTTTGCG 674 Query 689 AAAATGGCGAGTGTTCTAGAGATCAAACACGAAGAAATGGAAGATTTGTTTGATGATGTT 748 ||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||| Sbjct 675 AAAATGGCGAGTGTTCTTGAGATCAAACGCGAAGAAATGGAAGATTTGTTCGAGGATGTT 734 Query 749 TGGCAATCTATCAAGATTAATTACTACCCGCCATGTCCACAGCCAGATCAAGTTATGGGT 808 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 735 TGGCAATCTATCAAGATTAATTACTACCCACCATGTCCACAACCAGATCAAGTTATCGGT 794 Query 809 TTGACTCAACATTCAGACGCTGCAGGTCTCACAATACTCTTACAGGTGAATCAAGTGGAA 868 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 795 TTGACTCCACATTCAGACGCTGCAGGTCTCACAATACTATTACAGGTGAATCAAGTGGAA 854 Query 869 GGACTTCAGATCAAGAAAGACGGCAAGTGGGTTGTCGTAAAACCTCTTCGAGATGCTTTA 928 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 855 GGACTTCAGATCAAGAAACACGGCAAGTGGGTTGTCGTAAAACCTCTTCGAGATGCTTTA 914 Query 929 GTTGTTAATGTTGGCGAAATCTTAGAGATCATAACAAACGGGAGATATCGAAGCATCGAG 988 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 GTTGTTAATGTTGGAGAAATCTTAGAGATCATAACAAACGGGAGATATCGAAGCATCGAG 974 Query 989 CATAGAGCGGTGGTGAATTCAGAGAAAGAGAGGTTATCGGTTGCGATGTTTCATAGTCCC 1048 |||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||| Sbjct 975 CATAGAGCAGTGGTGAATTCAGAAAAAGAGAGGTTATCGGTTGCGGTATTTCATAGTCCG 1034 Query 1049 GGAAAGGAGACAATCATTCGTCCTGCGAAAAGCCTTGTAGATAGGCAGAAGCAATGTTTG 1108 |||||||||||| | ||| |||| |||||||||||||||||||||||||||||| | ||| Sbjct 1035 GGAAAGGAGACAGTAATTGGTCCGGCGAAAAGCCTTGTAGATAGGCAGAAGCAAAGCTTG 1094 Query 1109 TTCAAAAGTATGAGCACACAAGAGTACTTTGATGCCTTCTTTACTCAAAAACTCAATGGG 1168 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1095 TTCAAAAGTATGAGCACACAAGAGTACTTTGATGCCTTCTTTGCTCAGAAACTCAATGGA 1154 Query 1169 AAATCTCACCTTGATCTTATGCGTATTTAAGGAAAAAGACTCTCATAAAACATGTTT-CT 1227 ||||||||||||||||||||||||||||||||| || ||| |||||||||||||| | Sbjct 1155 AAATCTCACCTTGATCTTATGCGTATTTAAGGACAA-GACCCTCATAAAACATGTAGACC 1213 Query 1228 TCGTAATTTTGTAATTAAGAGAAATCTTTCATCTTGCTTCTTGTCATTAAAGACATTAAT 1287 |||||| ||||||||||||||||||| | || || | |||||||||||||||||| Sbjct 1214 TCGTAAATTTGTAATTAAGAGAAATCAT--AT-TT--T----GTCATTAAAGACATTAAT 1264 Query 1288 ACACACGCTTTAATT 1302 ||| ||||| ||||| Sbjct 1265 ACATACGCTCTAATT 1279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48682965009 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5