BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78560.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927270 jgi|Araly1|927270|scaffold_202831.1 1964 0.0
> Ahg927270 jgi|Araly1|927270|scaffold_202831.1
Length=1241
Score = 1964 bits (1063), Expect = 0.0
Identities = 1185/1244 (95%), Gaps = 8/1244 (1%)
Strand=Plus/Plus
Query 39 GAATCGCCGGTGAGAAAAGAAAATGGCGTCGGCGATTTCTCTTTCTCTCTTAAACGGAGC 98
|||||||||||||| ||| | || | | |||||||||| || |||||| | ||||||||
Sbjct 1 GAATCGCCGGTGAG-AAA-ATTAT-G-G-CGGCGATTTCCCTCTCTCTCGTGAACGGAGC 55
Query 99 AACGCCTTTGAAATCGAATTCGCTCCACAAATCTAGACTCACTCCACTTCATCTTCGAAC 158
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |
Sbjct 56 AACGCCTTTGAAATCGAATTCGCTCCACAAATCTAAACTCACTCCACTCCACCTTCGGCC 115
Query 159 TATCTCTTGTTCTAGACTATCTTACTCTCCCTCGAGTCGCGAAATTTCTCTCAAAACTCA 218
||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 116 TATCTCTTGTTCTAGGCTTTCTTATTCTTCCTCGAGTCGCGAAATTTCTCTCAAAACCCA 175
Query 219 ATCTACTGTTCCTATTTCGTGTAGGCGTAGTAGGTTTGACTTCGTTCCTCGTTGCGGCAT 278
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 ATCTACTGTTCCTATTTCGTGTAGGC---GTAGGTTTGACTTCGTTCCTCGTTGCGGCAT 232
Query 279 TTCGTCGAACGATTTGCCTACTGAGAAAAAGAAGAGCTTTGGGGAGTGGGTTGAGTTTGT 338
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 233 TTCGTCGAACGATTTGCCTACTGAGAAAAAGAAGAGCTTTGGCGAGTGGGTTGAGTTTGT 292
Query 339 GGGAGAGGCGGTTTCGACGGCGTTTCCGATATGGGTTTCTCTGGGATGCTTGTTGGGACT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GGGAGAGGCGGTTTCGACGGCGTTTCCGATATGGGTTTCTCTGGGATGCTTGTTGGGACT 352
Query 399 GATGAGACCAAGTACTTTCAATTGGGTTACTCCAAATTGGACCATTGTAGGTCTTACGAT 458
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 353 GATGAGACCAAGTACTTTCAATTGGGTCACTCCAAATTGGACCATTGCAGGTCTTACGAT 412
Query 459 CACTATGCTTGGAATGGGAATGACTTTGACCCTTGATGATCTTCGTGGCGCTTTATCGAT 518
||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 413 CACGATGCTTGGAATGGGAATGACTTTGACCTTTGACGATCTTCGTGGCGCTTTCTCGAT 472
Query 519 GCCCAAGGAGCTCTTCGCTGGCTTTCTGTTGCAGTATTCGGTCATGCCACTATCAGCATT 578
||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||
Sbjct 473 GCCCAAGGAGCTCTTCGCTGGCTTTGTGTTGCAATACTCGGTGATGCCACTATCAGCATT 532
Query 579 TTTTGTGAGTAAACTCTTAAATTTGCCACCACATTACGCAGCCGGTCTCATATTGGTTGG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTTTGTGAGTAAACTCTTAAATTTGCCACCACATTACGCAGCCGGTCTCATATTGGTTGG 592
Query 639 TTGCTGTCCAGGCGGCACGGCTAGTAATATTGTCACATACATCGCGCGTGGAAATGTTGC 698
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 593 TTGCTGTCCAGGCGGCACGGCAAGTAATATTGTCACATACATTGCACGTGGAAATGTTGC 652
Query 699 GCTATCAGTGTTGATGACAGCAGCTAGCACTGTTTCAGCTGTGATTATGACACCGCTTCT 758
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GCTATCAGTGTTGATGACTGCAGCTAGCACTGTTTCAGCTGTGATTATGACACCGCTTCT 712
Query 759 TACGGCGAAGCTTGCCAAGCAGTATATCACAGTTGATGCTCTTGGATTACTAATGTCAAC 818
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 713 TACGGCGAAGCTTGCCAAGCAATATATCACAGTTGATGCTCTTGGATTACTAATGTCAAC 772
Query 819 ACTACAGGTGGTTCTTCTCCCAGTGTTGGCTGGTGCATTTCTTAACCAATACTTTAAAAA 878
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 773 TCTACAGGTGGTTCTTCTCCCAGTGTTGGCTGGTGCATTTCTGAACCAATACTTTCAAAA 832
Query 879 GCTGGTGAAATTCGTCTCTCCTGTGATGCCTCCAATTGCGGTTGGAACAGTTGCAATCCT 938
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 833 GCTGGTGAAATTTGTTTCTCCTGTGATGCCTCCAATTGCGGTTGGAACCGTTGCAATTCT 892
Query 939 GTGTGGGTATGCTATCGGTCAGAACGCATCTGCAATACTCATGTCTGGGAAACAAGTAGT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GTGTGGGTATGCTATCGGTCAGAACGCATCTGCAATACTCATGTCTGGGAAACAAGTAGT 952
Query 999 CTTGGCTTCATGCCTTCTTCACATCTCTGGATTTCTCTTTGGGTATCTGTTTTCAAGAAT 1058
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 953 CCTGGCTTCATGTCTTCTTCACATCTCTGGATTTCTCTTTGGGTATCTGTTTTCAAGATT 1012
Query 1059 ACTCGGAATTGATGTGGCATCATCGAGAACTATCTCTATCGAAGTTGGCATGCAGAACTC 1118
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ACTCGGAATAGATGTGGCATCATCGAGAACTATCTCTATCGAAGTTGGCATGCAGAACTC 1072
Query 1119 GGTGCTTGGAGTTGTTCTTGCGACACAGCATTTTGGGAATCCACTCACTGCAGTACCGTG 1178
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1073 GGTGCTTGGAGTTGTTCTTGCGACACAGCATTTTGGGAATCCGCTCACTGCAGTACCGTG 1132
Query 1179 CGCTGTTTCTAGCGTCTGTCACTCAATCCTCGGTAGCGTCTTGGCTGGAATTTGGAGACG 1238
|||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |
Sbjct 1133 CGCTGTTTCTAGCGTCTGTCACTCAATCCTCGGTAGTGCCTTGGCTGGAATATGGAGAGG 1192
Query 1239 CAGTGCCCCAAAACAGCTTGAAGACTAAAAAGAAAGCAAAGGAA 1282
||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1193 TAGTGCCCCAAAACAGATTGAAGACTGAAAAGAAAGCAAAGGAA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5