BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78590.1
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477023 jgi|Araly1|477023|fgenesh2_kg.2__2153__AT1G78590.1 1755 0.0
> Ahg477023 jgi|Araly1|477023|fgenesh2_kg.2__2153__AT1G78590.1
Length=1210
Score = 1755 bits (950), Expect = 0.0
Identities = 1131/1215 (93%), Gaps = 25/1215 (2%)
Strand=Plus/Plus
Query 77 GAGATTGATTCAGCGACAATGGCGATTAGGAAGCTTTTGCTTCTTTTGAAACCGATTGAT 136
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1 GAGATTGATTCAGCGAGAATGGCGATCAGGAAGCTTTTGCTTCTATTGAAACCGATTGAT 60
Query 137 CCGTACCCATTCCTTCAAACAGAAGGTGCATCGCTCATCAAAAATCCTCAGGTTCTTCAA 196
||||||||||| || ||||| |||||| ||||||||||||||||||| ||||||||| ||
Sbjct 61 CCGTACCCATTTCTACAAACCGAAGGTTCATCGCTCATCAAAAATCCCCAGGTTCTTAAA 120
Query 197 TATCTAGAAAGCAGGTGCAAAGTACACAAGAATGCTATCAAGTTT-TGTCAGGAAATACT 255
||||| |||||||||||||||||||||| ||||||||| || ||| ||||||||||||||
Sbjct 121 TATCTGGAAAGCAGGTGCAAAGTACACAGGAATGCTATTAA-TTTCTGTCAGGAAATACT 179
Query 256 AAGTAAGAAGCCTGTTGAGTGGAAACCCATTTCACGTAACGACTTATCGCATCCCATTCG 315
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 AAGTAAGAAGCCTGTCGAGTGGAAACCCATTTCACGTAACGACTTATCCCATCCCATTCG 239
Query 316 TGATGTTGATATGGTCATCACCGTGGGTGGAGACGGTACCCTCTTGCATGCCAGTCATTT 375
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TGATGTGGATATGGTCATCACCGTGGGTGGAGACGGCACCCTCTTGCATGCCAGTCATTT 299
Query 376 CATTGATGACTCTGTTCCGGTTCTAGGAGTCAATTCTGACCCAACACAAGCTCACGAGGT 435
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CATCGATGATTCTGTTCCGGTTCTAGGAGTCAATTCTGACCCAACACAAGCTCAGGAGGT 359
Query 436 CGAAGAACTGAGCGATCAGTTTGACGCTAGTAGAAGTACTGGTCATCTTTGTGCTGCAAC 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAAGAACTGAGCGATCAGTTTGACGCTAGTAGAAGTACTGGTCATCTTTGTGCTGCAAC 419
Query 496 TGTCGAGAATTTTGAACAGGTGCTGGATGACATTTTGTTTGGCAGAGTGGTTCCTGCAAA 555
|| | |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 420 CGTTAATAATTTTGAACAGGTGCTGGATGACATTTTGTTTGGCAGAGTGGTTCCTTCTAA 479
Query 556 AGTATCGAGAATATCATTGAAGTTAAATTCAGAAAC-TCTTCTTTCACATGCACTTAATG 614
||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 480 AGTTTCCAGAATATCATTGAAGTTAAATTCAG-AACTTCTTCTTTCACATGCACTTAATG 538
Query 615 ACATTTTGATCGCACAGCCATGCCCTGCTGCGGTTTCAAGGTTCTCTTTCAAGATTAAGA 674
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 539 ACATTTTGATCGCACACCCATGCCCTGCCGCGGTTTCAAGGTTCTCATTCAAGATTAAGA 598
Query 675 ACAAAGATGGTGCGAGCAGTCCAAAGACAGTGAACTGCCGCTCAAGCGGTCTAAGAATCT 734
||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 599 ACAAAAATGGTGAGAGCAGTCCAAAGACAGTGAACTGCCGGTCAAGTGGTCTAAGAATCT 658
Query 735 GCACAGCTGCTGGTTCAACTGCAGCAATGCAGTCAGCAGGTGGGTTCGTGATGCCAATGT 794
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 GCACAGCTGCTGGCTCAACTGCCGCAATGCAGTCAGCAGGTGGGTTCGTGATGCCAATGT 718
Query 795 TGTCTCGTGATCTACAGTTCATGGTTAGAGAGCCAATATCTCCTGGTTCAACCGCTTCGT 854
|||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| | |
Sbjct 719 TGTCTCGTGATCTACAATTCATGGTTAGAGAGCCAATCTCTCCTGGTTCAACTGCTCCTT 778
Query 855 TAATGCATTC-GACCTTCAAACCAGACCAATTCATGGACGTTAACTGGTATTCAGACCAC 913
|||||||||| | |||||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct 779 TAATGCATTCTG-CCTTCAAAACGGACCAGTTCATGGATGTTAACTGGTATTCAGACCAT 837
Query 914 GGGACTATCTACATCGATGGTTGTCAGGTTCAACACAGCGTGCAGCTCGGAGATACAATC 973
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGGACTATATACATCGACGGTTGTCAGGTTCAACACAGCGTGCAGCTCGGAGATACAATC 897
Query 974 GAGATATCATCGGATGCGCCAGTCTTAAACGTTTTCTTGTCACACGGCATATCTCAGATC 1033
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 898 GAGATATCATCGGATGCGCCGGTCTTAAACGTTTTCTTGTCTCACGGCATTTCTCAGATC 957
Query 1034 AGATCAAGGTACTAGAATTGGTACAATGGTAGATTTTGTTCATAAAGTTA-GAGTTGGTA 1092
| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 958 AAATCAAGGTACTAGAATTGGTACAATGGTAGATTT-GTTCATAAAGTTAAGAGTTGGTA 1016
Query 1093 CACATT-A-AG-------AGCCCACTTGTCTGTAGATATGGT-A-AAA-GATTCCTTGGT 1140
|||||| | || ||||||||||||| |||||||||| | ||| ||||| |||||
Sbjct 1017 CACATTGATAGCCGTTTTAGCCCACTTGTCTATAGATATGGTTATAAAAGATTCTTTGGT 1076
Query 1141 CCGAAAGATTCGTTGATTCTTGAATCTTTGGTGCTTGAAGAAGTTTAATTCAAGTAGCTA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 CCGAAAGATTCGTTGATTCTTGAATCTTTGGTGCTTGAAGAAGTTTAATTCGAGTAGCTA 1136
Query 1201 TCTTTCTCCT---ACCAAGAACGTGGATGTGTCTAATCCTCTTGAATAAAACTT-ATATT 1256
|||||||||| ||||||||||||||||||||| |||||||| ||||||| || ||||
Sbjct 1137 TCTTTCTCCTCCTACCAAGAACGTGGATGTGTCTGATCCTCTTAAATAAAA-TTCATATA 1195
Query 1257 TAAAGAAAAATAATA 1271
|||||||||||||||
Sbjct 1196 TAAAGAAAAATAATA 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48416104590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5