BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78600.2
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477024 jgi|Araly1|477024|fgenesh2_kg.2__2154__AT1G78600.1 880 0.0
> Ahg477024 jgi|Araly1|477024|fgenesh2_kg.2__2154__AT1G78600.1
Length=1130
Score = 880 bits (476), Expect = 0.0
Identities = 613/674 (91%), Gaps = 29/674 (4%)
Strand=Plus/Plus
Query 228 TTTTTGCGTTTTCTGGATGAGTTTGAGATAAGAGAAGATGAAGATTCAGTGTAACGTTTG 287
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 23 TTTTTGGGTTTTCTGGATGAGTTTGAGATAAGAGAGGATGAAGATTCAGTGCAACGTTTG 82
Query 288 TGAGGCGGCGGAAGCGACGGTTCTATGTTGCGCCGACGAGGCTGCTCTTTGTTGGGCTTG 347
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 83 TGAGGCGGCGGAAGCGACGGTGCTATGTTGCGCCGACGAGGCTGCTCTGTGTTGGGCATG 142
Query 348 CGATGAGAAAATTCACGCCGCTAATAAACTCGCCGGAAAACATCAGAGAGTCCCTCTCTC 407
|||||||||| | ||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 143 CGATGAGAAAGTCCACGCTGCTAATAAACTCGCCGGAAAACACCAGAGAGTTCCTCTCTC 202
Query 408 TGCCTCTGCCTCTTCCATACCCAAATGTGACATTTGTCAGGAAGCATCTGGATTCTTCTT 467
|| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 203 TGTCTCTTCCTCTTCCATACCCAAATGCGACATTTGTCAGGAAGCATCTGGATTCTTCTT 262
Query 468 TTGTCTGCAAGATAGAGCTTTGCTATGTAGGAAATGTGATGTTGCAATCCACACTGTGAA 527
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 263 CTGTCTGCAAGATAGAGCTTTACTATGTAGGAAATGTGATGTTGCAATCCACACTGTAAA 322
Query 528 TCCTCATGTTTCAGCTCACCAGAGATTTCTTCTCACTGGAATCAAAGTTGGTCTTGAATC 587
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 323 TCCTCATGTTTCAGCTCATCAGAGATTTCTTCTGACTGGAATCAAAGTTGGTCTTGAATC 382
Query 588 TATAGACACTGGTCCTTCTACTAAATCCTCACCTACCAATGATGATAAAACCATGGAGAC 647
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 383 TATAGACACTGGTCCTTCTACAAAATCCTCACCAACCAATGATGATAAAACCATGGAGAC 442
Query 648 CAAACCTTTTGTTCAATCTATACCTGAGCCTCAAAAGATGGCCTTCGATCATCATCATCA 707
||| |||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 443 GAAATCTTTTGTTCAATCTATACCTGAGCCTCAAAAGATGG-----G-T--T--TC---- 488
Query 708 CCAGCAGCAGCAGGAACAGCAGGAAGGAGTTATACCGGGAACTAAAGTCAATGATCAGAC 767
| | |||||| || |||| | || |||||| ||||||||||| |||||| ||
Sbjct 489 ---G-ATCAGCAG---CA--AGGA-GT--TT-TACCGGAAACTAAAGTCAGTGATCACAC 535
Query 768 ATCGACAAAGCTTCCTCTCG-TAAGTAGCGGATCAACTACTGGAAGCATTCCTCAGTGGC 826
||| |||||||||||| ||| || | ||||||||||||||||||||||||||||||||||
Sbjct 536 ATCTACAAAGCTTCCTTTCGCTA-GCAGCGGATCAACTACTGGAAGCATTCCTCAGTGGC 594
Query 827 AAATAGAGGAGATTTTCGGGCTAACCGACTTTGATCAGAGCTATGAATACATGGAGAATA 886
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AAATAGAGGAGATTTTCGGACTAACCGACTTTGATCAGAGCTATGAATACATGGAGAATA 654
Query 887 ATGGATCATCTAAG 900
||||||||||||||
Sbjct 655 ATGGATCATCTAAG 668
Score = 649 bits (351), Expect = 0.0
Identities = 396/418 (95%), Gaps = 1/418 (0%)
Strand=Plus/Plus
Query 961 GCGGATACTAGTAGACGAGGAGATTCAGACAGTTCTTCGATGATGAGATCTGCAGAAGAA 1020
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 669 GCGGATACTTGTAGACGAGGAGATTCAGACAGTTCTTCCATGATGAGATCTGCCGAAGAA 728
Query 1021 GATGGAGAAGATAACAATAACTGCTTGGGAGGTGAGACATCATGGGCGGTTCCACAGATT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GATGGAGAAGATAACAATAACTGCTTGGGAGGTGAGACATCATGGGCGGTTCCACAGATT 788
Query 1081 CAGTCTCCACCTACAGCGTCTGGTCTAAACTGGCCTAAGCATTTTCACCACCACTCTGTG 1140
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 789 CAGTCTCCACCTACAGCTTCTGGTCTAAACTGGCCTAAGCATTTTCACCACCACTCAGTG 848
Query 1141 TTTGTTCCGGACATAACTTCTTCAACTCCTTATACCGGTTCATCCCCGAATCAAAGGGTT 1200
|||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||
Sbjct 849 TTTGTTCCGGACATAAATTTTTCAACTCCTTATTCCGGTTCATCCCCGAACCAAAGGGTT 908
Query 1201 GGGAAACGGCGGCGACGGTTCTAGCATTTGTAATTATCTTTTAGCCGCTTGAGAAAAGAG 1260
||||||||| ||||||||||||| |||| || |||||||| |||| ||||||||||||
Sbjct 909 GGGAAACGGTGGCGACGGTTCTAACATTCACAACTATCTTTTGGCCGTTTGAGAAAAGAG 968
Query 1261 ATTGGCAGCTTT-CTCAGTAGATGTAAGATCACATAAATGATTTGGAAACTTGTAATGTA 1319
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ATGGGCAGCTTTTCTCAGTAGATGTAAGATCACATAAATGATTTGGAAACTTGTAATGTA 1028
Query 1320 GTGATCTGTGAGAGTCGGTGTTCTTTGTTAGCTGaaaaaacaaaaaGATGTTTATTTG 1377
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1029 GTGATCTGTGAGAGTCCATGTTCTTTGTTAGCTGAAAAAACAAAAAGATGTTAATTTG 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5