BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78610.1
Length=2767
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927275 jgi|Araly1|927275|scaffold_202836.1 3982 0.0
> Ahg927275 jgi|Araly1|927275|scaffold_202836.1
Length=2614
Score = 3982 bits (2156), Expect = 0.0
Identities = 2469/2615 (94%), Gaps = 42/2615 (2%)
Strand=Plus/Plus
Query 1 ATGGCCGTTGATGCGGCTGACCGGCGAGAAGTTATCGTCAAAATCGACGGTGAAAACGGA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 21 ATGGCCGTTGATTCGGCTGACCGGCGAGAAGTTATCGTCAAAATCGACGGT-------G- 72
Query 61 AACAACAATGGAGTCTCCGGAGAGACTGTAGGAAAG-ATATGGAGAGACGGAAGCTACGA 119
| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 73 -ATAACAATGGAGTCTCCGGAGAGACTGTAGG-AAGAATATGGAGAGACGGAAGTTACGA 130
Query 120 TTTTTGGACTGATGGTGAAGGTAACCTCAACAAAGGTCATAATGCTGCGGCGGTTGATTC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TTTTTGGACTGATGGTGAAGGTAACCTCAACAAAGGTCATAATGCTGCGGCGGTTGATTC 190
Query 180 TGATAGATCCGCCGCCACGACGGGGGAGCAACAAAAAGATGAGGGTTTTGAGTTTCGTCG 239
||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||
Sbjct 191 CGATAGATCCGCCGCCACCACGGAGGAGCAAC---AAGATGAGGGTTTTGAGTTTCGGCG 247
Query 240 CGGCGAAGATCCTCCCACGAAGCTGATTGGTCAGTTTCTCCATAAACAGCAAGCTTCCGG 299
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 248 CGGCGAAGATCCTCCCACCAAGCTTATTGGTCAGTTTCTCCATAAACAGCAAGCTTCCGG 307
Query 300 TGAGATTTGT-TTAGATATGGACTTAGGTATGGACGAGCTTCAATCTAGAGGTTTAACTC 358
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 308 TGAGATTTGTCTT-GATATGGACTTAGGTATGGATGAGCTTCAATCTAGAGGTTTAACTC 366
Query 359 CGGTATCGGAATCTCCGA-------G--AGTTTCTA-CAAA--ACGTGACCCCGTGGGAA 406
|||||||||||||||||| | ||| ||| |||| | ||||||||||||||
Sbjct 367 CGGTATCGGAATCTCCGACGTCGGCGAAAGTGCCTACCAAACCTCCTGACCCCGTGGGAA 426
Query 407 GACGAGACAGTCGCAGTAATACCAACAATAACGATGATGGAGAAGTTGTCAAGTGTAGTG 466
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 427 GACGAGACAGCCGCAGTAATAACAACAATAACGATGATGGAGAAGTTGTCAAGTGTAGTG 486
Query 467 GTAATAATGCTCCGATTCAGAGAAGCTCTAGCACTTTACTTAAGATGAGAACTAGGTCAC 526
| ||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||
Sbjct 487 G---TAATGCTCCGATTCAGAGAAGCTCTAGCAATTTGCTTAAGATGAGGACTAAGTCAC 543
Query 527 GTCTTTCGGATCCGCCAACGCCTCAGTTGCCGCCGCAAACGGCGGATATGAAGTCGGGTC 586
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 544 GGCTTTCGGATCCGCCAACGCCTCAGTTGCCACCGCAAACGGCGGATATGAAATCGGGTC 603
Query 587 GGATTCCGAAATCCGGGCAGATGAAATCAGGtttttttGGAAAAAGCCCTAAGACTCAAG 646
|||| ||||||||||||||||||||||| || ||||| |||||||||||||||| |||||
Sbjct 604 GGATCCCGAAATCCGGGCAGATGAAATCTGGGTTTTTCGGAAAAAGCCCTAAGAATCAAG 663
Query 647 GTGAGGAAGAAGAAGATGATCCATTTGCAGCAGAGGATTTACCAGAAGAGTATAGGAAAG 706
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 664 GGGAGGAAGAAGAAGATGATCCATTTGCAGCGGAGGATTTACCAGAAGAGTACAGGAAAG 723
Query 707 ATAAACTTAGTCTATGGATTGTGTTGGAATGGTTGAGTTTGATTTTGATTATAGCTGGGT 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 724 ATAAACTTAGTCTATGGATTGTGTTGGAATGGTTGAGTTTGATTTTGATTATAGCTGGCT 783
Query 767 TTGTTTGCACTCTTGCGATACCTTCCTTGCGTAAGAAGAAACTCTGGGAACTTCAGCTAT 826
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 784 TTGTTTGCACTCTTGCCATACCTTCCTTGCGTAGGAAGAAACTCTGGGAACTTCAGCTAT 843
Query 827 GGAAATGGGAGTCAATGGTTTTAGTGTTGATCTGTGGTAGGTTAGTCTCGAGCTGGATTG 886
||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||
Sbjct 844 GGAAATGGGAGTCAATGATTTTAGTGTTGATCTGTGGTAGGTTAGTGTCTAGTTGGATTG 903
Query 887 TGAAGATTGTTGTCTTCTTTATCGAAAGGAACTTTCTTTTGAGGAAAAGAGTTTTGTATT 946
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTAAGATTGTTGTCTTCTTCATCGAAAGGAACTTTCTTTTGAGGAAAAGAGTTTTGTATT 963
Query 947 TCGTTTATGGTGTCCGAAAAGCGGTGCAGAATTGCTTATGGTTAGGACTTGTTTTACTGG 1006
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 964 TCGTCTATGGTGTCCGAAAAGCGGTGCAGAATTGCTTATGGTTAGGACTTGTTTTACTCG 1023
Query 1007 CTTGGCATTTCTTGTTTGATGAGAAAGTGGCTAAAGCAGCAAACACTAAGGCGCTTCGTG 1066
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1024 CTTGGCATTTCTTGTTTGATGAGAAAGTGGCTAAAGCAGCAAACACTAAGGCTCTTCGGG 1083
Query 1067 TTGTGACTAAGATCTTTGTGTGTTTGTTGGTTGGGTTCTTGTTGTGGCTCGTGAAGACAC 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TTGTGACTAAGATCTTTGTGTGTTTGTTGGTTGGGTTCTTGTTGTGGCTCGTGAAGACAC 1143
Query 1127 TGTTGGTCAAAGTTCTTGCTTCATCGTTTCATATGAGCACTTACTTCGATAGGATTCAAG 1186
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1144 TGTTGGTCAAGGTTCTTGCTTCCTCGTTCCATATGAGCACTTACTTCGATAGGATTCAAG 1203
Query 1187 AGTCTTTGTTTACTCAGTATGTGATTGAGACGCTCTCGGGTCCTCCTTTGATTGAGATCC 1246
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 AGTCTCTCTTTACTCAGTATGTGATTGAGACGCTCTCGGGTCCTCCTTTGATTGAGATCC 1263
Query 1247 aaaaaaaTGAGGAAGAGGAAGAGAGAATCAGTGTTGAGGTTAAGAAGTTTCAAAATCCAG 1306
||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1264 AAAAAAACGAGGAAGAGGAAGAGAGAATAAGTGTTGAGGTTAAGAAGTTTCAGAATCCCG 1323
Query 1307 GGGGTGTTGAGATTCAGTCAGGAGCTCAGAAAAGTCCAATGAAGACCGGGAAAAGCCCGT 1366
| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1324 GAGGTGTTGAGATTCAGTCAGGGGCTCAGAAAAGTCCGATGAAGACCGGGAAAAGCCC-T 1382
Query 1367 TT-CTCTCTCATGTTCTATCTAAT---GGAGGA-G-GG-GGAGGAGGAGAAAACAAAGGG 1419
|| |||||| ||||||||||||| |||||| | || |||||||||||||||||||||
Sbjct 1383 TTGATCTCTCGTGTTCTATCTAATGGAGGAGGAGGAGGAGGAGGAGGAGAAAACAAAGGG 1442
Query 1420 ATTACGATCGATAGCCTTCATAAGCTGAATCCTAAGAATGTTTCCGCATGGAAAATGAAG 1479
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1443 ATTACGATCGATAGCCTTCATAAGCTGAATCCTAAGAATGTTTCGGCGTGGAAAATGAAG 1502
Query 1480 AGGCTGATGAATATAATCCGGAATGGATCACTTACCACTTTGGATGAACAGCTTCAGGAT 1539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1503 AGGCTGATGAATATAATCCGGAATGGATCACTTACCACTTTGGATGAACAGCTTGAAGAT 1562
Query 1540 CCAAGCTTGGATGATGATAAAGGAAACCAAATTAGAAGTGAGTTTGAGGCAAAGCTCGCT 1599
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1563 CCAAACTTGGATGATGATAAAGGAAACCAAATCAGAAGTGAGTTTGAGGCAAAGCTCGCC 1622
Query 1600 GCAAGAAAGATCTTTCATAATGTTGCTAAGCCAGGATCAAAGTTCATCTATGCAAACGAC 1659
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1623 GCAAGAAAGATCTTTCATAATGTTGCTAAGCCAGGATCAAAGTTCATCTACGCGAATGAC 1682
Query 1660 ATAATGCGGTTTCTGCCAGATGACGAAGCTTTGAAGACTTTAAGTCTCTTTGAAGGAGCA 1719
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 ATTATGCGGTTTCTGCCGGATGACGAAGCTTTGAAGACTTTAAGTCTCTTTGAAGGAGCA 1742
Query 1720 TCTGAGACGAACAGGATCAGCAAGTCATCTCTTAAAAACTGGGTGGTGAATGCTTTTAGA 1779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1743 TCTGAGACGAACAGGATCAGCAAATCATCTCTTAAAAACTGGGTGGTGAATGCTTTTAGA 1802
Query 1780 GAGAGAAGAGCTCTTGCATTGACCCTAAACGACACCAAAACAGCAGTAAACAGGCTTCAC 1839
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GAAAGAAGAGCTCTTGCATTGACCCTAAACGACACCAAAACAGCAGTAAACAGGCTTCAC 1862
Query 1840 AAGATGGTGAATATCGTGGTTGGGATCATCATACTTGTTATCTGGCTTATCATACTTGGA 1899
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1863 AAGATGGTGAATATCGTGGTTGGGATCATCATACTTGTTATTTGGCTTATCATACTTGGA 1922
Query 1900 ATCACTTCCACCAAATTCCTCGTCGTCATGAGCTCGCAAGTCGTGGTTGTAGCATTCATA 1959
|||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1923 ATCACTTCCACCAAGTTCCTCGTGGTCATGAGCTCGCAAGTTGTGGTTGTCGCATTCATA 1982
Query 1960 TTTGGAAACATGTGCAAGATAGTATTTGAATCTATCATCTACTTGTTTGTGATACATCCG 2019
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1983 TTTGGAAACATGTGCAAGATAGTATTCGAATCTATCATCTACTTGTTTGTGATACACCCA 2042
Query 2020 TTTGATGTAGGCGATCGATGTGAAATTGATGGAGTCCAGATGGTTGTGGAAGAGATGAAC 2079
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2043 TTTGATGTAGGCGATCGATGCGAGATTGATGGAGTCCAGATGGTTGTGGAAGAGATGAAC 2102
Query 2080 ATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTT 2139
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 ATTTTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTT 2162
Query 2140 CTCTGGACTAAATCCATCGGAAATTATTACCGTAGTCCTGATATGGGAGATGGTATCGAA 2199
||||||||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 2163 CTCTGGACTAAATCCATTGGAAACTATTACCGTAGCCCCGATATGGGAGATGGAATCGAA 2222
Query 2200 TTCTCCATCCACATTACTACTCCAGCTGAGAAAATCATACTCATCAAACAGAGAATCACA 2259
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2223 TTCTCCATCCACATTACTACTCCAGCTGAGAAAATCATCCTCATCAAACAGAGAATCACA 2282
Query 2260 AGTTACATTGAGGGCAAGAAGGATCATTGGTATCCAGCGCCAATGATAGTATTCAAAGAC 2319
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2283 AGTTACATTGAGGGGAAGAAGGATCATTGGTATCCGGCGCCGATGATAGTATTCAAAGAC 2342
Query 2320 ATGGAGTCATTAAACAGCGTGAGAATTGCGGTTTGGCCAACACATCGAATGAATCATCAA 2379
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2343 ATGGAGTCATTAAACAGTGTGAGAATTGCGGTTTGGCCAACGCATCGAATGAATCATCAA 2402
Query 2380 GATATGGGAGAGAAATGGGCTCGAAGGTCTCAACTTGTTGAAGAGATTGCCAAAATTTGC 2439
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2403 GATATGGGAGAGAAATGGGCTCGAAGGTCTCAACTTGTTGAAGAAATTGCCAAGATTTGC 2462
Query 2440 AGAGAGCTTGACATTGAGTATAGATTGTATCCTCTTGATATCAATGTCCGAAACTTGCCC 2499
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 2463 AGAGAGCTCGACATTGAGTATAGATTGTATCCTCTTGACATCAATGTCCGAAACATGCCC 2522
Query 2500 ACTTCTACGGCTTTGCCTGTTTCCGACCGTCTTCCACCAAACTGGAGTGCTCCAGCTTCT 2559
|||||||| | |||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2523 ACTTCTACTGTTTTGCCAGTTTCCGACCGTCTTCCACCAAATTGGACTGCTCCAGCTTCT 2582
Query 2560 GGCAGCAACTGAGAAACTATAGATAAAACTTTTTA 2594
|||||||||||| || ||||| |||||||||||||
Sbjct 2583 GGCAGCAACTGA-AA-CTATA-ATAAAACTTTTTA 2614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104405361545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5