BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78620.2
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477027 jgi|Araly1|477027|fgenesh2_kg.2__2157__AT1G78620.1 1943 0.0
> Ahg477027 jgi|Araly1|477027|fgenesh2_kg.2__2157__AT1G78620.1
Length=1895
Score = 1943 bits (1052), Expect = 0.0
Identities = 1396/1549 (90%), Gaps = 76/1549 (5%)
Strand=Plus/Plus
Query 16 TCTTCGGAAGCAAGCTAAGTCATGGCAACGATTTCGTC-A-ACT-CTACTCTTAAATTCT 72
|||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1 TCTTCGGAAGGAAGCTAAGTCATGGCAACGATTTCGTCTAGTCTACTACTCTTAAATTCT 60
Query 73 TCTAGATCAGCTTT-ACCACTAAGATTCCCAAAATTCTCGGGATTTTCTTCTTCCT-CTC 130
|||||||||| ||| ||| || ||||||||||||||||||||||||||||||| || |||
Sbjct 61 TCTAGATCAG-TTTCACCTCTGAGATTCCCAAAATTCTCGGGATTTTCTTCTT-CTGCTC 118
Query 131 CATTCGCTAGATCTTACAGATTTGGACGACGTAATCTGGAACCACTTTCCAACGGAATGC 190
||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 CATTCGCTAGATCTTGCCGATTTGGACGACGTAATCTGGAACCCCTTTCCAACGGAATGC 178
Query 191 TTTCGTCGGGAAGTAGAGCCGACGGTGCTACGGCGGCGGCTGCATCGATGGAAGGAGTGA 250
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct 179 TTTCGTCGGGAAGCAGAGCCGACGGTGCCACGGTGGCGGCTGCATCGATGGAAGGTGTGA 238
Query 251 TGACGGAGGCGATGAAACTGATTCAATCGGCGTCACCAACTTGGAAATCAGCTGTGGCTA 310
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 239 TGACGGAGGCGATGAAGCTGATTCAATCGGCGTCTCCAACCTGGAAATCAGCCGTGGCTA 298
Query 311 ACAATTTATTGATTTTTGTTCTCGGTTCACCGCTTCTTGTTACCGGATTGTCCGCTTCTG 370
||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 299 ACAATTTGTTGATATTTGTTCTCGGTTCACCGCTTCTTGTTACTGGATTGTCTGCTTCTG 358
Query 371 GGATCGCCGCCGCGTTTTTGCTTGGTACTTTAACTTGGAGAGCTTATGGCTCTGCTGGTT 430
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 359 GGATCGCCGCCGCGTTTTTGCTCGGTACTTTAACTTGGCGAGCTTATGGCTCTGCTGGTT 418
Query 431 TCCTCTTAGTCGCTGCTTACTTCGTCATAGTAAGTGCATTTGTGATCAACCTGAATGGAA 490
|||||||||| | | | | | | | | | | || | || | | | ||||
Sbjct 419 TCCTCTTAGT--C-G----C-T-G-C-T--T-A---C--TT-CG-TC-A--T--A-GGAA 451
Query 491 CAGCGGCAACGAAGGTTAAAATGACGCAAAAGGAAGCACAAGGTGTGGCCGAAAAGAGAA 550
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 CAGCGGCAACAAAGGTTAAAATGACGCAAAAGGAAGCACAAGGTGTGGCCGAAAAGAGAA 511
Query 551 AGGGTAGAAGAGGACCACGCAGTGTGATTGGTTCAAGTGCTGCTGGTTGTGTCTGTGCTT 610
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 AAGGCAGAAGAGGACCACGCAGTGTGATTGGTTCAAGTGCTGCTGGTTGTGTCTGTGCTT 571
Query 611 TTCTTTCAATATATCAAGTGGGAGGAGCAGCTTTTTCCCAGCTTTTCCGGCTTGGTTTTG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTCTTTCAATATATCAAGTGGGAGGAGCAGCTTTTTCCCAGCTTTTCCGGCTTGGTTTTG 631
Query 671 TTTCCAGTTTCTGCACTAAAGTATCTGACACTGTCTCGAGCGAGATAGGCAAAGCTTATG 730
|||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 632 TTTCCAGTTTCTGCACTAAAGTGTCTGACACCGTCTCAAGTGAGATAGGCAAAGCTTATG 691
Query 731 GAAAAACAACGTATTTAGCTACGACATTTAAGATTGTACCAAGAGGAACAGAGGGAGCTA 790
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 692 GAAAAACAACGTATTTAGCTACGACATTTAAGATTGTACCAAGAGGAACCGAGGGAGCTA 751
Query 791 TGAGTCTTGAAGGAACATTGGCTGGACTTTTAGCATCATTTTTTCTTGCATCTGTTGGCT 850
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TGAGTATTGAAGGAACATTGGCTGGACTTTTAGCATCATTTTTTCTTGCATCTGTTGGCT 811
Query 851 GCTTCCTGGGTCAGATAACTCCTCCAGAAGCAGCTGTATGTGTACTAGCTTCCCAGATTG 910
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GTTTCCTGGGTCAGATAACCCCTCCAGAAGCAGCTGTATGTGTACTAGCTTCCCAGATTG 871
Query 911 CCAATCTTGGAGAGAGCATAATAGGTGCTTCTTTTCAAGACAAAGAAGGATTCAAATGGC 970
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CCAATCTTGGAGAAAGCATAATAGGTGCTTCTTTTCAAGACAAAGAAGGATTCAAATGGC 931
Query 971 TAAACAATGATGTAGTCAACGTGATCAACATAAGCTTGGGAAGCATTGTGGCGATTTTGA 1030
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 932 TAAACAATGATGTAGTCAACGTGATCAACATAAGCTTGGGAAGCATCGTAGCGATTTTGA 991
Query 1031 TGCAACAGTTTATACTCCAGAACTGGGTCAAGTAAAACCTGCCACGAAGGTCATGTATTC 1090
|||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct 992 TGCAACAGTTTATACTCCAGAATTGGGTCAAGTAAAACCTGTCACGAAGGTCATGTCTTC 1051
Query 1091 TCAGTGAGGTTAGATT------Cttt-ttttAT--ATTGTTAAACACAGCCTTACGTATT 1141
|||||||||||||||| |||| |||| | |||||||||||| | |||||||||
Sbjct 1052 TCAGTGAGGTTAGATTTTTTTTCTTTCTTTTTTCTATTGTTAAACAC--C-TTACGTATT 1108
Query 1142 CAGTGGTGTTATAAATTATACTCTGTTGTGTACAACTAGTAGTCCAACATCAATGAGGGG 1201
|||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1109 CAGTTGTGTTGTAAATTACACTCTGTTGTGTACAATTAGTAGTCCAACATCAATGAGGGG 1168
Query 1202 A-A-A-AAACTTCTGGGACCATTGTCTAGCAATTATTGGATGATATTTATGTGAATTAAG 1258
| | | |||||||||| ||| ||||||| ||||||||||||||||| || |||||||||
Sbjct 1169 ATATATAAACTTCTGGAACCCTTGTCTAACAATTATTGGATGATATGAATTTGAATTAAG 1228
Query 1259 TTTGCCTTTGCAATTGTCCCGTAGATAGAGAAACTTATAAAATTTC-T---TCTGCTTAG 1314
| |||||| |||||||||||||||||||| |||| |||||| || | ||| ||| |
Sbjct 1229 TCCACCTTTGAAATTGTCCCGTAGATAGAGAGACTTTTAAAATCTCATAAATCT-CTT-G 1286
Query 1315 GGATCCATTCACGTGATTTCTTCTATTTCCTTCACATGAAGTCCAAATTCTATTGCGACA 1374
|||||||||| |||| ||||| | |||||||||||||| |||||| ||||||||||||
Sbjct 1287 --ATCCATTCACTTGATCTCTTCCACTTCCTTCACATGAAATCCAAACTCTATTGCGACA 1344
Query 1375 TCATAAATTGAAGAA-CATGTaaaaaaagtt-atgtagcaaa-tagagaaagtagtgatg 1431
||| ||||||||||| | |||||||||| | | |||| ||| ||||| |||||||||||
Sbjct 1345 TCAGAAATTGAAGAAAC-TGTAAAAAAAATACAGGTAG-AAAGTAGAGGAAGTAGTGATG 1402
Query 1432 aaaatgtaagaaaaaagtttgaagaaaagGCAACAACAAAGTACCAAGAATTGGTTGAGA 1491
|||||||||||||| | | ||||||||||||| ||| ||||||||||||
Sbjct 1403 TAAATGTAAGAAAAA-G---G---------CAACAACAAAGTATCAAAAATTGGTTGAGA 1449
Query 1492 AAGAAGTCGTCGAAGAG-TCGTGATTTTCTCGAATACATTCTTCTTTTT 1539
||||||| | || || |||||||||||||||||||||||||| ||||
Sbjct 1450 AAGAAGTAGAAAAAAAGGTCGTGATTTTCTCGAATACATTCTTCCTTTT 1498
Score = 224 bits (121), Expect = 2e-57
Identities = 230/277 (83%), Gaps = 29/277 (10%)
Strand=Plus/Plus
Query 1576 ATATTCTCGACGTTGCATAAGATAGTGTTTCTGGTGGCCAATTTTAATTTAGAAGCCTCT 1635
||||||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1499 ATATTCTCGTCGTTGCGTAAGATAATGTTTCTGGTGGCCAATTTTAATTTAGATGCCTCT 1558
Query 1636 AGAGAAA-AA---T--GCATCCATCGGCCTAGCTGTTAAACAAGACAGCGAGACTTAACA 1689
||||||| || | ||||| |||||||||||||||| ||| | | | ||||||||||
Sbjct 1559 AGAGAAATAAAACTAAGCATCAATCGGCCTAGCTGTTATACA-G-C-G--AGACTTAACA 1613
Query 1690 GGCTTGTTTACTTTTAGACTTATGAAACATGAAGAAAAATTATACAATGCGTTGCTTCTA 1749
||| || | ||||| | | | || ||||||||| |||||||||||||||||| ||
Sbjct 1614 GGCCTGCT-ACTTT-A-A---A-GA----TGAAGAAAATTTATACAATGCGTTGCTTTTA 1662
Query 1750 CGAACCT--GTGGTCCGCAATAAGATACGACAATGGCCCATGGGCCGCAACATCTGTCTA 1807
||||||| ||||||||| ||| |||||||| |||||||||||||||| |||| ||||||
Sbjct 1663 CGAACCTTTGTGGTCCGCTATACGATACGACGATGGCCCATGGGCCGCGACATTTGTCTA 1722
Query 1808 ACACACAGCTGACAAGTGTCAAAATTCACACGCGCTC 1844
| ||| ||||||||||| ||| |||||||||||
Sbjct 1723 ATACA--GCTGACAAGTGACAAC---CACACGCGCTC 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77323197350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5