BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78630.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477028 jgi|Araly1|477028|fgenesh2_kg.2__2158__AT1G78630.1 1524 0.0
> Ahg477028 jgi|Araly1|477028|fgenesh2_kg.2__2158__AT1G78630.1
Length=981
Score = 1524 bits (825), Expect = 0.0
Identities = 895/929 (96%), Gaps = 4/929 (0%)
Strand=Plus/Plus
Query 3 AAAGAGCAGAAGAAATTTGCAGAAGAGAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 62
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAGCAGAAGAATTTTGCAGAAGAAAGAAAAACAAAAATGGCGGTTCTTTGCTCGTCT 60
Query 63 TCGACGGTGATACTCTCTTCTTCTTCCGTGAAATCCTCCGGAAGTGAGAGAAAGTCTCCG 122
||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCGACGGTGATACTCCCTACTTCTTCCGTGAAATCCTCCGGTTGTGAGAGAAAGTCTCCG 120
Query 123 TTTTTAGGGTTCTCTTTAACGGCTATCTCGAAGCCGTCGGTACGAGTCGGCATTTATGCG 182
||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 121 TTTTTAGGGTTCTCTCTAACGGCTATCTCGAAGCCGTCGGTAAGAGTTGGCATTTATGCG 180
Query 183 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGC---CGACGACGACGACTTCT 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGCAGACGACGACGACGACTTCT 240
Query 240 CTTGTTCCGGCGAATCAACGATGGATGTTCGACGAAGAAGAAGCTAATGGCCCTGACATC 299
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 CTTGTTCCGGCGAATCAGCGATGGATGTTCGACGAAGAAGAAGCCAATGGCCCTGACATC 300
Query 300 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGACAAGCCCTGGTTT 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGATAAGCCCTGGTTT 360
Query 360 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCGACAATTGCTAATCACATC 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCAACAATTGCTAATCACATC 420
Query 420 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTCGACATGGGAGCTTTTGTGATTGTG 479
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 421 CGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTTGACATGGGAGCCTTTGTGATTGTG 480
Query 480 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAGAAGCGTAACCAAAAGCTGTACAGGAGG 539
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 481 GTGAATGCTGAGAAAGTTGCTGTATCTGGAAAAAAGCGGAACCAAAAGCTGTACAGGAGG 540
Query 540 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATT 600
Query 600 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGACGGCTTGGGAGA 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 CCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGAAGGCTTGGGAGA 660
Query 660 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAGGCCCAGAAA 719
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 661 GCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCGGACCATCCACACGAGGCCCAGAAG 720
Query 720 CCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCTCCACCAC 779
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 721 CCGCTTGATCTGCCTATTAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCACCTCCAC 780
Query 780 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAGTTTCTTCAT 840
Query 840 CCCAAAACCAGAGGAGGCTTTACAGATTCTTGTTTTCGCTTCTATCAACTCTGTTATGCT 899
| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 841 TC-AAAACCAGAGGAGGCTTTGCAGATTCTTGTTATCGCTTCTATCAACTCTGTTATGCT 899
Query 900 ACAAAACTTTCTAATTTGAAATATTTCTC 928
| ||| ||||||||| |||||||||||||
Sbjct 900 ATAAAGCTTTCTAATGTGAAATATTTCTC 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5