BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78640.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927279 jgi|Araly1|927279|scaffold_202840.1 861 0.0
> Ahg927279 jgi|Araly1|927279|scaffold_202840.1
Length=748
Score = 861 bits (466), Expect = 0.0
Identities = 634/709 (89%), Gaps = 36/709 (5%)
Strand=Plus/Plus
Query 763 GCAAAGAAGAGTCAGACGTTTATGAGCCAAGAGCAGCAGGGGACGTCTCCGTTGAACACA 822
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 51 GCAAAGAAGAGTCAGACGTTTATTAGCCAAGAGCAGCAGGGGACGTCTCCGATGAACACA 110
Query 823 GACGAAGCCTTAAAGAGTCATCATAGCTTCTCGCAGAA-CCCAAATTACATCGAAAGTAA 881
||||||||||| ||| |||||||| |||||| | | || |||||||||| | |||||||
Sbjct 111 GACGAAGCCTTGAAGGGTCATCATTGCTTCT-GGAAAACCCCAAATTACCTTGAAAGTAC 169
Query 882 TCTGTCTAGAAGATACCAGACTAACTTTTCGCTTGGCTCACAAAGAATCTCTGGGCAGTT 941
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct 170 TCTGTCTAGAAGATACCAGAGTAACTTTTCGCTTGGCTCACAAAGATTCTCTGGCCAGTT 229
Query 942 TTTGATGATCCCTAATCCTGGATTTGTCGACACAAGTTCGATGACAAATACTCACGATAC 1001
| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct 230 TCTGATGATCCCTAACCCTGGATTTGTCGACATAAGTTCGATGACAAATAGTCAGGATAC 289
Query 1002 CAGTCTAGCAAATTTTCAGACTGTGCCTACAACTACCAATCCAAAGATTATCTTGAAAGA 1061
|| || ||||| ||||| | | | ||||||||||||||||||||||||||||
Sbjct 290 CAATCCAGCAAGTTTTC--A----G----C--CTACCAATCCAAAGATTATCTTGAAAGA 337
Query 1062 GGAAAAAGAAAATGAGGAGGAGCAACAGTACTGGACCATCAAGAAGGAACTGACCAAGAG 1121
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GGAAAAAGAAAAT---GAGGAGCAACAGTACTGGACCATCAAGAAGGAACTGACCAAGAG 394
Query 1122 CGATGCTTGCC-A----A-----CG--G-CTTACTCTGTCAAAAAGCTCTGTTGAGGAGC 1168
| ||| ||||| | | || | |||||||||||||||||||| ||||||||||
Sbjct 395 CAATG-TTGCCTACGGTACTTGCCGTCGACTTACTCTGTCAAAAAGCTCCGTTGAGGAGC 453
Query 1169 ACATTCTCAAGCATCTCCTTCCAGAAGATTCCCAAAAGATAGACAAAGGCAAGCCCGGAA 1228
||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 454 ACATTCTGAAACATCTCCTTCCAGAAGATTCCAAAAAGATAGACAAAGGCAAGCCCGGAA 513
Query 1229 TCACGGTTAAGGTATACGACAACGATACTGACACTGAGCACGAGCTATGTCTAGCATTCC 1288
||||||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 514 TCACGGTTATGGTGTACGACCACGATACAGACACTGAGCACGAGCTCTGTCTAGCATTCC 573
Query 1289 AGTGTAGCTATGTTCTAAAGAATGGTTGGGTGAAAACATTTGTCAAAAGGAGAGGGTTGG 1348
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 574 AGCGTAGCTATGTTCTAAAGAATGGTTGGGTTAAAACATTTATCAAAAGGAGAGGCTTGG 633
Query 1349 AGGAAGGAGACATGATTGGTCTCTTCTGGGAATGCTCTACTTCTAAGCTTCATTTTAGTG 1408
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 634 AGGAAGGAGACAAGATTGGTCTCTTCTGGGAATGCTCTACTTATAAGCTTCATTTTAGTG 693
Query 1409 TGCTTTTTCGTGTAAATG-CAAAAGCTCCTGCAGCAGAAGAAAAAGAAG 1456
|||||| ||||||||| | |||||||||| |||| ||||||||||||
Sbjct 694 TGCTTTCTCGTGTAAA-GACAAAAGCTCC---AGCATAAGAAAAAGAAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5