BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78650.1
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477029 jgi|Araly1|477029|fgenesh2_kg.2__2159__AT1G78650.1 2455 0.0
> Ahg477029 jgi|Araly1|477029|fgenesh2_kg.2__2159__AT1G78650.1
Length=1672
Score = 2455 bits (1329), Expect = 0.0
Identities = 1583/1701 (93%), Gaps = 35/1701 (2%)
Strand=Plus/Plus
Query 27 AAAAACCTCCCAAATCTGAGAAATCGGAAAAGATGACCCACACCGAAACCCTAAATCTGC 86
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 1 AAAAACCTCCCAAATCTGAGAAATCGGAAAAGATGACTCACACCGAAACCCTAAATATTC 60
Query 87 TCGATGAAATCGAGTCTTTTGTCTCCGATCAGCTTCAAGTGGTATCTTACAAATGGCTGA 146
||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TCGATGAAATCGAATCGCTTGTCTCCGATCAGCTTCAAGTGGTATCTTACAAATGGTTGA 120
Query 147 GTCGAAATTTCTCGCTTTCATCAAATACGGCCAAGAGGTTGCTCAAGGATTTTGTAGAGA 206
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GTCGAAATTTCTCGCTTTCATCAAATACTGCCAAGAGGTTGCTCAAGGATTTTGTAGAGA 180
Query 207 AACATGGGAAGGGTTTGGAAGTTGTATATATTGTGTCCGGATTGCTAAAGAACGGACCTT 266
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 181 AACAAGGGAAGGGTTTGGAAGTTGTATATATTGTGTCTGGGTTGCTAAAGAACGGACCTT 240
Query 267 CCG-ATTACCACGCAAGGCTTGCTTCTAGTACCGAACTTCCAGAAGTAGAGAAAGAGTTC 325
|| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 241 -CGAATTACCACGCAAGGCTTGCTTCTAGCACCGAACTTCCAGAAGTGGAGAAAGAGTTC 299
Query 326 AATGGAAAATATTCAGTACATATCTACAGTGTTCAAGCTAGTATTCCAATGGATCCAGCA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATGGAAAATATTCAGTACATATCTACAGTGTTCAAGCTAGTATTCCAATGGATCCAGCA 359
Query 386 GCCATATGGAACACTGAGTTTGTACAAGCAGAAGAACTCTTCAGGCAGCCTTCTGCCACT 445
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 360 GCCATATGGAACACTGAGTTTGTGCAAGCAGAAGAACTCTTCAGGCAGCATTCTGCCATT 419
Query 446 GATAATTGTTTGAAAGGCAACAGGTTTTGTGGCGTCTCCAATTCTTGTGTGAAGCGCAAT 505
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 GATAATTGCTTGAAAGGCAACAGGTTTTGTGGCGTCTCCAATTCTTGTGTAAAGCGCAAT 479
Query 506 ATAGAGGGAGCCACTGAAAATGTTACCGCCCCGCGAACTGAAAGTGTGAGAACTACAGGA 565
||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 480 ATAGAGGGAACCACTGAAAATGTTACGGTCCCGCGAACTGAAATTGTGAGAACTACAGGA 539
Query 566 CAATCTAAAAGTAGTTCAAATTTTCAAAAGAGTACAGTGCCGTCAAACCAGGGAAAGAAT 625
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CAATCTAAAAGTAGTTTAAATTTTCAAAAGAGTACATTGCCGTCAAACCAGGGAAAGAAT 599
Query 626 TTCCAGCACTCAAGCTCTAATGTTGGCCATCAGGCTAAGAGTGAATCTATTGCTGCTCCA 685
|| |||||||||||| ||||||||| |||||||| |||||||||| ||| ||||||||||
Sbjct 600 TTTCAGCACTCAAGCCCTAATGTTGTCCATCAGGGTAAGAGTGAAACTACTGCTGCTCCA 659
Query 686 GCTAAAAATCAGTCTGCGAAATCCTCTTTGGATAAAGAAAAAGCTTTTCATGTGCCCGCT 745
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 GCTAAAAATCAGTCTGCGAAATCCTCTTTGGATAAAGAAAAAGCTTTTCCTGTGCCCGCT 719
Query 746 AATAAAAAGAATGGACAGGGCGAGAAGA-GCGTGACTGGAACTGGTGGTTTGTTGAAAAA 804
||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 720 AATAAAAAGAATGGACAGGGCGAAAAGAAG-GTGACTGGAACTGGTGGTTTGTTGAAAAA 778
Query 805 TATGTGGGGCCGTGTGCCTGTGAAAACAGAAGATGATTCTCCAACAGTAGATGTGAAAAA 864
||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||
Sbjct 779 TATGTGGGGCCGTGTGCCTATGAAAACAGAAGATGATACTCCAACAGTAGAGGTCAAAAA 838
Query 865 TCATATTACTAATCATTCGGAACCCCAAAAACCTTCTCATGATGCTGACAAGAAGGGAGG 924
||||| |||| ||||||||||| || ||||||||||||||||| | ||||| || |||||
Sbjct 839 TCATAATACTGATCATTCGGAAGCCGAAAAACCTTCTCATGATACCGACAATAAAGGAGG 898
Query 925 CAGCGATGATGAGACTCGAGACGCCAATTTCATGAGAGCGCCTAAA---GATAACAGAAA 981
||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 899 CAGCGATGATGAGACTCGAGATGTCAATTTCATGAGAGCGCCTAAAAATGATAACAGAAA 958
Query 982 AAGAAAGGTGATATTTGATTTTTCAGATGACGAGTATGAAGATGTAATCAGCTTAGCATC 1041
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 AAGGAAGGTGATATTTGATTTTTCAGATGACGAGTATGAAGATGTAATCAGCCTAGCATC 1018
Query 1042 TCCTAGTAGTCCAAAGGTTAATTCACGTCCAGATGTCGAACTCAGTTCGGAAGATTCAGG 1101
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1019 TCCTAGTAGTCCAAAGGTTAATTCACGTCCAGATGTGGAACTCAGTTCCGAAGATTCAGG 1078
Query 1102 TCCAGAGAAGCCTGACGCAGATGTTTCTCCAGAGATAAAATCTGAGGAACCAGAGGCCAG 1161
|||| ||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 1079 TCCAAAGAAGCCTGACGCAGAT----CG--AGAGATAAAATCTGAGGAACCAGAGGTCAG 1132
Query 1162 CAAAGAAGACAGGCAAAACACTGCTTCTGTTGATGCTTCTACGACTTTGTCAACGGAGAA 1221
|||||||||||||||||| || || | |||||||||||||||||| ||||||
Sbjct 1133 CAAAGAAGACAGGCAAAA-AC--CT---G------CTTCTACGACTTTGTCAATGGAGAA 1180
Query 1222 GATCCAGGCCATTGGTTCTGAAGCTGAAGTGAATCCCTCAAAGAGAAGAACTACTGCAGT 1281
||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||
Sbjct 1181 GATCCAGGCCATTGGTTCTGAAGCTAAAGTAAATCCCTCAAAGGGAAGAACTACTGAAGT 1240
Query 1282 TCCTAGTTCGCCGAAAAGGAAAAAGGTGTTGAAGTCACGGATTGATGATCGTGGGAGAGA 1341
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TTCTAGTTCACCGAAAAGGAAAAAGGTGTTGAAGTCACGGATTGATGATCGTGGGAGAGA 1300
Query 1342 AGTAACTGAGGTAGTGTGGGAGGAGACAGAAACGAA-CGCAAAGAAGAAAGAGGACACTA 1400
|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1301 AGTAACTGAGGTAGTGTGGGAGGAGACAGAAACGCTTC-CTAAGAAGAAAGAGGACACTG 1359
Query 1401 ATACAAGTAAGAAGTTAGATGATGGCAAAACCGCAAATGCTGTTAACAGGGCGGTTGCAC 1460
| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
Sbjct 1360 ACACAAGTAAGAAGTTAAATGATGGCAAAAGCGCAAATGCTGTTAACAGGGCGGTGGCGC 1419
Query 1461 AGAAGAAGAGTCCGGCCATTGGAAACACAGCAGCGACAAACGCAGGAGGAAAAGCGGGAA 1520
||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1420 AGAAGAAGAGTCCGGCCGTGGGAAACACAGCAGCCACAAACGCAGGAGGAAAAGCAGGAA 1479
Query 1521 GCAAGAAAGGAGGAAACGTCAAAGATCCAAAGCAAGGGAATATAATGTCCTTCTTCAAGA 1580
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1480 GCAAGAAAGGCGGAAACGCCAAAGATCCAAAGCAAGGGAACATAATGTCCTTCTTCAAGA 1539
Query 1581 AAGTTTAAAAAGGCTTCTTTTTTGTATTTATTGTTTGCTAAGTTTGAGTTGAGGATATTA 1640
||||||||||| |||| ||| ||||||||||||||||| |||||| |||||||||| |
Sbjct 1540 AAGTTTAAAAATGCTT-TTT---GTATTTATTGTTTGCTATGTTTGA-TTGAGGATAT-A 1593
Query 1641 TAGGAAAATCAGAACTTGGATTCATCTGACTGTATGTTCTGATCCATTGTGTCTAAGaaa 1700
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1594 TATCAAAATCAGAACTTGGATTCATCTGACTGTATGTTTTGATCCATTGTTTCTAA-AAA 1652
Query 1701 aaaaaCTTTTGAGCCGTTTCT 1721
|| | ||||||||||||||||
Sbjct 1653 AACA-CTTTTGAGCCGTTTCT 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64562965275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5