BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78660.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477030 jgi|Araly1|477030|fgenesh2_kg.2__2160__AT1G78660.2 1629 0.0
Ahg359459 jgi|Araly1|359459|fgenesh1_pg.C_scaffold_262000001 1044 0.0
Ahg951932 jgi|Araly1|951932|scaffold_26200003.1 937 0.0
Ahg316768 jgi|Araly1|316768|fgenesh1_pm.C_scaffold_2001801 905 0.0
Ahg927282 jgi|Araly1|927282|scaffold_202843.1 750 0.0
Ahg951931 jgi|Araly1|951931|scaffold_26200002.1 728 0.0
> Ahg477030 jgi|Araly1|477030|fgenesh2_kg.2__2160__AT1G78660.2
Length=1205
Score = 1629 bits (882), Expect = 0.0
Identities = 1007/1067 (94%), Gaps = 10/1067 (1%)
Strand=Plus/Plus
Query 170 CGATTTTGCTCCCTAGTGAATCCGGATTTGACGGTTCTCGGAGTCCGGTTTGCTCCTCGC 229
|||| |||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 105 CGATATTGCTCCCTAGTCAAGCCGGATTTGACGGTTCAGGGAGTCCGGTTTGCTCCTCGC 164
Query 230 CGGATCCGAACCTCAACTACAGACCTGTCATCGGTATCCTGAGTCACCCTGGAGATGGTG 289
||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 165 CGGATCCGAACCTGAACTACAGGCCGGTCATCGGTATCCTGAGTCACCCTGGAGATGGCG 224
Query 290 CGTCTGGTCGGTTGACCAATGATACGAGCTCGACGTACATCGCTGCTTCGTATGTGAAGT 349
|||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||
Sbjct 225 CGTCCGGTCGGTTGACCAATGATACGAGTTCCACGTACATCGCGGCTTCCTATGTAAAGT 284
Query 350 TCGCTGAGGCAGGTGGTGCTCGTGTTATCCCACTCATCTACAACGAACCTGAAGAAGTGC 409
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 285 TCGCTGAGGCAGGTGGAGCTCGTGTTATCCCACTCATCTACAACGAACCTGAAGAACTCC 344
Query 410 TCTTCCAGAAGCTAGAGTTGGTCAACGGTGTGATATTCACTGGTGGTTGGGCTAAAAAAT 469
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TCTTTCAGAAGCTAGAACTGGTCAACGGTGTGATATTCACTGGTGGTTGGGCTAAAAAAT 404
Query 470 ATGATTATTTCGAGATCGTCaaaaaaaTCTTCACTAAAGCTTTGGAGAGAAATGATGCTG 529
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 405 ATGATTATTTCGAGATCGTCAAAAAAATCTTCAATAGAGCTTTGGAGAGAAATGATGCTG 464
Query 530 GAGAGCATTTCCCAGTATATGGCATTTGCCTCGGATTCGAGCTTATGTCAATTATCATAA 589
|||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 465 GAGAGCATTTTCCAGTTTATGGCATTTGTCTCGGATTCGAGCTTATGTCAATTATCATCA 524
Query 590 GTCAGAACAGAGACATTCTTGAAAGATTTGATGCAGAGGATAATGCATCAAGTCTCCAGT 649
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 525 GTCAGAACAGAGACATTCTTGAAAGATTTGATGCAGAGGATAATGCATCAACCCTACAGT 584
Query 650 TTGTTGATAATGTTAATAACGATGGAACATTATTCCAAAGATTTCCGCCAGAGTTGTTGA 709
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||
Sbjct 585 TTGTTGATAATGTTAATATCGATGGAACATTATTCCAAAGATTTCCTCCAGAGCTGTTGA 644
Query 710 AAAAACTCAGTACAGATTGTTTGGTTATGCAGAAACACAAGTATGGTATCACACCAGCAA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAAAACTCAGTACAGATTGTTTGGTTATGCAGAAACACAAGTATGGTATCACACCAGCAA 704
Query 770 ACTTTCAAGCCAATCCTGCTTTGTCTAGTTTCTTTGAAATTCTCACAACCTGCATTGATG 829
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 705 ACTTTCAAGGCAATCCTGCTTTGTCTAGTTTCTTTGAAATCCTCACAACCTGCATAGATG 764
Query 830 AAAACAGCAAGACTTATGTTTCAACTGTTAAAGCAAAGAGATACCCAATAACTGGCTTCC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AAAACAGCAAGACTTATGTTTCAACTGTTAAAGCAAAGAGATACCCAATAACTGGCTTCC 824
Query 890 AGTGGCATCCTGAGAAAAATGCATTTGAATGGGGATCATCTGCGATTCCACACTCTGAGG 949
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 825 AGTGGCATCCTGAGAAAAATGCATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGG 884
Query 950 ATGCAATCCAGGTGACACAGCATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCAC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATGCAATCCAGGTGACACAGCATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCAC 944
Query 1010 TGAACAGACCAG-AGTCTCAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACT 1068
||||||||||| | || |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 945 TGAACAGACCACCA-TCAAAGAAAGTGCTAAGCAATCTCATATACAACTATAAGCCTACT 1003
Query 1069 TACTGTGGATACGCAGGGAGGGGTTACGACGAGGTTTACATTTTTACACAACCAAGATCC 1128
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1004 TACTGTGGATACGCAGGGAGGGGTTACGACGAGGTTTACATTTTCACACAACCAAGATCC 1063
Query 1129 CGTTTCTAAGAACTTTACTCGTCGTCTTGTGTGTTTGTTTGGAACTCTTATTT--A---- 1182
||||||| || |||||||||||| ||||||||||||||||| |||||| |||| |
Sbjct 1064 CGTTTCTGAGGACTTTACTCGTCTTCTTGTGTGTTTGTTTGTAACTCTGATTTCTAGTTT 1123
Query 1183 CATT-TAGGGAGCCGGATTGTCTTGCATGATTTCCCTTGTTGATTTT 1228
|||| |||||||||| ||||| ||||||||||||||| |||||||||
Sbjct 1124 CATTGTAGGGAGCCG-ATTGTTTTGCATGATTTCCCTGGTTGATTTT 1169
> Ahg359459 jgi|Araly1|359459|fgenesh1_pg.C_scaffold_262000001
Length=633
Score = 1044 bits (565), Expect = 0.0
Identities = 610/632 (97%), Gaps = 2/632 (0%)
Strand=Plus/Plus
Query 505 AAAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTCCCAGTATATGGCATTTGCCTCGGA 564
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1 AAAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTTCCAGTTTATGGCATTTGTCTCGGA 60
Query 565 TTCGAGCTTATGTCAATTATCATAAGTCAGAACAGAGACATTCTTGAAAGATTTGATGCA 624
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGAGCTTATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTTGATGCA 120
Query 625 GAGGATAATGCATCAAGTCTCCAGTTTGTTGATAATGTTAATAACGATGGAACATTATTC 684
|||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 121 GAGGATAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGAACATTATTC 180
Query 685 CAAAGATTTCCGCCAGAGTTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCAGAAA 744
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCAGAAA 240
Query 745 CACAAGTATGGTATCACACCAGCAAACTTTCAAGCCAATCCTGCTTTGTCTAGTTTCTTT 804
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 CACAAGTATGGTATCACACCAGCAAACTTTCAAGGCAATCCTGCTTTGTCTAGTTTCTTT 300
Query 805 GAAATTCTCACAACCTGCATTGATGAAAACAGCAAGACTTATGTTTCAACTGTTAAAGCA 864
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAATCCTCACAACCTGCATAGATGAAAACAGCAAGACTTATGTTTCAACTGTTAAAGCA 360
Query 865 AAGAGATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTGAATGGGGA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGAGATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTGAATGGGGA 420
Query 925 TCATCTGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTGCTAGTTAT 984
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTGCTAGTTAT 480
Query 985 TTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAG-AGTCTCAGAAAGTGCTGAGCAA 1043
|||||||||||||||||||||||||||||||||||| | || |||||||||| |||||
Sbjct 481 TTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCA-TCAAAGAAAGTGCTAAGCAA 539
Query 1044 TCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACGACGAGGT 1103
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACGACGAGGT 599
Query 1104 TTACATTTTTACACAACCAAGATCCCGTTTCT 1135
||||||||| ||||||||||||||||||||||
Sbjct 600 TTACATTTTCACACAACCAAGATCCCGTTTCT 631
> Ahg951932 jgi|Araly1|951932|scaffold_26200003.1
Length=1087
Score = 937 bits (507), Expect = 0.0
Identities = 837/995 (84%), Gaps = 28/995 (3%)
Strand=Plus/Plus
Query 163 TCTGAGTCGATTTTGCTCCCTAGTGAATCCGGATTTGACGGTTCTCGGAGTCCGGTTTGC 222
|||| | ||||| | ||||||||| || |||||||||| ||||||||||||||| |||
Sbjct 93 TCTGCGGCGATTCTCCTCCCTAGTCAAACCGGATTTGATATTTCTCGGAGTCCGGTATGC 152
Query 223 TCCTCGCCGGATCCGAACCTCAACTACAGACCTGTCATCGGTATCCTGAGTCACCCTGGA 282
||| ||||||||||||||||||| ||||| || || || || || ||||| || |||||
Sbjct 153 TCCGCGCCGGATCCGAACCTCAATTACAGGCCGGTTATTGGGATTCTGAGCCATCCTGGT 212
Query 283 GATGGTGCGTCTGGTCGGTTGACCAATGATACGAG-CTCGACGTACATCGCTGCTTCGTA 341
|| |||||||| ||||| |||| ||||| ||| || | || ||| ||| || ||||||||
Sbjct 213 GACGGTGCGTCGGGTCGTTTGAGCAATGCTAC-AGACGCGTCGTCCATTGCGGCTTCGTA 271
Query 342 TGTGAAGTTCGCTGAGGCAGGTGGTGCTCGTGTTATCCCACTCATCTACAACGAACCTGA 401
|||||| || |||||| | ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct 272 TGTGAAATTAGCTGAGTCTGGTGGAGCACGTGTGATCCCACTCATCTATAACGATCCTGA 331
Query 402 AGAAGTGCTCTTCCAGAAGCTAGAGTTGGTCAACGGTGTGATATTCACTGGTGGTTGGGC 461
|||| | ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 332 AGAAATTCTCTTTCAGAAGCTAGAATTGGTCAACGGTGTGATACTCACTGGTGGTTGGGC 391
Query 462 TAAAAAATATGA-T-TATTTCGAGATCGTCaaaaaaaTCTTCACTAAAGCTTTGGAGAGA 519
| ||| | | || | ||||| || |||||||| |||||||||| ||||| |||||| |||
Sbjct 392 T-AAAGA-AGGATTGTATTTTGAAATCGTCAAGAAAATCTTCAATAAAGTTTTGGAAAGA 449
Query 520 AATGATGCTGGAGAGCA-TTTCCCAGTATATGGC-ATTTGCCTCGGATTCGAGCT-TATG 576
||||||||||||||||| ||||| | |||| || |||||||||||||| ||||| | ||
Sbjct 450 AATGATGCTGGAGAGCATTTTCCTA-TATA-CGCTATTTGCCTCGGATTTGAGCTCT-TG 506
Query 577 TCAATTATCATAAGTCAGAACAGAGACATTCTTGAAAGATTTGATGC-AGAGGATAATGC 635
|||| |||||||||||||||||||||||| |||||| | | ||||| ||| || |||
Sbjct 507 ACAATGATCATAAGTCAGAACAGAGACATTTTTGAAAAAATGGATGCAAGA-AATTCTGC 565
Query 636 ATCAAGTCTCCAGTTTGTTGATAATGTTAATAACGATGGAA-CATTATTCCAAAGATTTC 694
||||||||| ||||| |||| |||||||||| | | |||| |||| |||||||||||||
Sbjct 566 ATCAAGTCTTCAGTTCCTTGAAAATGTTAATATCCAAGGAACCATT-TTCCAAAGATTTC 624
Query 695 CGCCAGAGTTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCAGAAACA-CAAGTAT 753
| ||||| |||||||||||||| ||||||||||||| ||||||||||| || | || |
Sbjct 625 CTCCAGAACTGTTGAAAAAACTCGGTACAGATTGTTTAGTTATGCAGAACCATC-GGTTT 683
Query 754 GGTATCACACCAGCAAA-CTTTCAAGCCAATCCTGCTTTGTCTAGTTTCTTTGAAATTC- 811
|||||| |||||| ||| |||| ||| |||| |||| |||| ||||||||| ||| ||
Sbjct 684 GGTATCTCACCAG-AAAGCTTTGAAGGCAATGTTGCTCTGTCCAGTTTCTTT-AAAATCG 741
Query 812 TCACAACCTGCATTGATGAA-AACAGCAAGACTTATGTTTCAACTGTTAAAGCAAAGAGA 870
||||||| || ||||| || ||||||||| |||||||||||| ||| || |||| | |
Sbjct 742 TCACAACAAGCGTTGAT-AACAACAGCAAGGTTTATGTTTCAACAGTTCAATCAAAAAAA 800
Query 871 TACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTGAATGGGGATCATCT 930
|| ||| | || ||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 801 TATCCAGTGACCGGCTTCCAGTGGCATCCCGAGAAAAATGCATTCGAGTGGGGATCATCC 860
Query 931 GCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTGCTAGTTATTTAGTC 990
||||||||||||||||| || ||||||||||| ||||| || || | | || |||||
Sbjct 861 AAAATTCCACACTCTGAGGACGCGATCCAGGTGACTCAGCACGCAGCAAATCATCTAGTC 920
Query 991 AGTGAAGCTAGGAAGTCACTGAACAGACCAGAGTCTCAGAAAGTGCTGAGCAATCTCATT 1050
|||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||
Sbjct 921 AGTGAAGCTAGGAAGTCACTGAACAGGCCGGACTCTAAGAAAGTGCTGAGCAATCTCATT 980
Query 1051 TACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACGACGAGGTTTACATT 1110
|| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 981 TATAACTACAAGCCTACCTACTGTGGATACGCAGGGAAGGGTTACGACGAGGTTTACATC 1040
Query 1111 TTTACACAACCAA-GATCCCGTT-TCTAAGAACTT 1143
|| ||||| | || |||||| || ||||| |||||
Sbjct 1041 TTCACACAGC-AACGATCCC-TTCTCTAATAACTT 1073
> Ahg316768 jgi|Araly1|316768|fgenesh1_pm.C_scaffold_2001801
Length=1032
Score = 905 bits (490), Expect = 0.0
Identities = 814/970 (84%), Gaps = 24/970 (2%)
Strand=Plus/Plus
Query 163 TCTGAGTCGATTTTGCTCCCTAGTGAATCCGGATTTGACGGTTCTCGGAGTCCGGTTTGC 222
|||| | ||||| | ||||||||| || |||||||||| ||||||||||||||| |||
Sbjct 70 TCTGCGGCGATTCTCCTCCCTAGTCAAACCGGATTTGATATTTCTCGGAGTCCGGTATGC 129
Query 223 TCCTCGCCGGATCCGAACCTCAACTACAGACCTGTCATCGGTATCCTGAGTCACCCTGGA 282
||| ||||||||||||||||||| ||||| || || || || || ||||| || |||||
Sbjct 130 TCCGCGCCGGATCCGAACCTCAATTACAGGCCGGTTATTGGGATTCTGAGCCATCCTGGT 189
Query 283 GATGGTGCGTCTGGTCGGTTGACCAATGATACGAG-CTCGACGTACATCGCTGCTTCGTA 341
|| |||||||| ||||| |||| ||||| ||| || | || ||| ||| || ||||||||
Sbjct 190 GACGGTGCGTCGGGTCGTTTGAGCAATGCTAC-AGACGCGTCGTCCATTGCGGCTTCGTA 248
Query 342 TGTGAAGTTCGCTGAGGCAGGTGGTGCTCGTGTTATCCCACTCATCTACAACGAACCTGA 401
|||||| || |||||| | ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct 249 TGTGAAATTAGCTGAGTCTGGTGGAGCACGTGTGATCCCACTCATCTATAACGATCCTGA 308
Query 402 AGAAGTGCTCTTCCAGAAGCTAGAGTTGGTCAACGGTGTGATATTCACTGGTGGTTGGGC 461
|||| | ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 309 AGAAATTCTCTTTCAGAAGCTAGAATTGGTCAACGGTGTGATACTCACTGGTGGTTGGGC 368
Query 462 TAAAAAATATGA-T-TATTTCGAGATCGTCaaaaaaaTCTTCACTAAAGCTTTGGAGAGA 519
| ||| | | || | ||||| || |||||||| |||||||||| ||||| |||||| |||
Sbjct 369 T-AAAGA-AGGATTGTATTTTGAAATCGTCAAGAAAATCTTCAATAAAGTTTTGGAAAGA 426
Query 520 AATGATGCTGGAGAGCA-TTTCCCAGTATATGGC-ATTTGCCTCGGATTCGAGCT-TATG 576
||||||||||||||||| ||||| | |||| || |||||||||||||| ||||| | ||
Sbjct 427 AATGATGCTGGAGAGCATTTTCCTA-TATA-CGCTATTTGCCTCGGATTTGAGCTCT-TG 483
Query 577 TCAATTATCATAAGTCAGAACAGAGACATTCTTGAAAGATTTGATGC-AGAGGATAATGC 635
|||| |||||||||||||||||||||||| |||||| | | ||||| ||| || |||
Sbjct 484 ACAATGATCATAAGTCAGAACAGAGACATTTTTGAAAAAATGGATGCAAGA-AATTCTGC 542
Query 636 ATCAAGTCTCCAGTTTGTTGATAATGTTAATAACGATGGAA-CATTATTCCAAAGATTTC 694
||||||||| ||||| |||| |||||||||| | | |||| |||| |||||||||||||
Sbjct 543 ATCAAGTCTTCAGTTCCTTGAAAATGTTAATATCCAAGGAACCATT-TTCCAAAGATTTC 601
Query 695 CGCCAGAGTTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCAGAAACA-CAAGTAT 753
| ||||| |||||||||||||| ||||||||||||| ||||||||||| || | || |
Sbjct 602 CTCCAGAACTGTTGAAAAAACTCGGTACAGATTGTTTAGTTATGCAGAACCATC-GGTTT 660
Query 754 GGTATCACACCAGCAAA-CTTTCAAGCCAATCCTGCTTTGTCTAGTTTCTTTGAAATTC- 811
|||||| |||||| ||| |||| ||| |||| |||| |||| ||||||||| ||| ||
Sbjct 661 GGTATCTCACCAG-AAAGCTTTGAAGGCAATGTTGCTCTGTCCAGTTTCTTT-AAAATCG 718
Query 812 TCACAACCTGCATTGATGAA-AACAGCAAGACTTATGTTTCAACTGTTAAAGCAAAGAGA 870
||||||| ||| ||||| || |||| |||| |||||||||||| ||| || |||| | |
Sbjct 719 TCACAACATGCGTTGAT-AACAACAACAAGGTTTATGTTTCAACAGTTCAATCAAAAAAA 777
Query 871 TACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTGAATGGGGATCATCT 930
|| ||| | || ||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 778 TATCCAGTGACCGGCTTCCAGTGGCATCCCGAGAAAAATGCATTCGAGTGGGGATCATCC 837
Query 931 GCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTGCTAGTTATTTAGTC 990
||||||||||||||||| || ||||||||||| ||||| || || | | || |||||
Sbjct 838 AAAATTCCACACTCTGAGGACGCGATCCAGGTGACTCAGCACGCAGCAAATCATCTAGTC 897
Query 991 AGTGAAGCTAGGAAGTCACTGAACAGACCAGAGTCTCAGAAAGTGCTGAGCAATCTCATT 1050
|||||||||||||||||||||||||| || || ||| ||||||||||||| ||||||||
Sbjct 898 AGTGAAGCTAGGAAGTCACTGAACAGGCCGGACTCTAAGAAAGTGCTGAGTTATCTCATT 957
Query 1051 TACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACGACGAGGTTTACATT 1110
|| | ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 TATAGCTACAAGCCTACCTACTGTGGATACGCAGGGAATGGTTACGACGAGGTTTACATC 1017
Query 1111 TTTACACAAC 1120
|| |||||||
Sbjct 1018 TTCACACAAC 1027
> Ahg927282 jgi|Araly1|927282|scaffold_202843.1
Length=1093
Score = 750 bits (406), Expect = 0.0
Identities = 673/801 (84%), Gaps = 22/801 (3%)
Strand=Plus/Plus
Query 323 CGTACATCGCTGCTTCGTATGTGAAGTTCGCTGAGGCAGGTGGTGCTCGTGTTATCCCAC 382
|||||||||| ||||||||||||||||| |||||| | ||||| |||||||| || || |
Sbjct 277 CGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTC 336
Query 383 TCATCTACAACGAACCTGAAGAAGTGC-TCTTCCAGAAGCTAGAGTTGGTCAACGGTGTG 441
| ||||||||||| ||||||||| | | | || || |||||||| |||| || ||||||
Sbjct 337 TTATCTACAACGAGCCTGAAGAACT-CTTGTTTCAAAAGCTAGAACTGGTGAATGGTGTG 395
Query 442 ATATTCACTGGTGGTTGGGCTAAAAAATATGATTAT-TT-CGAGATCGTCaaaaaaaTCT 499
||||||||||||||||||||| |||| | |||||| || ||| || || | |||||||
Sbjct 396 ATATTCACTGGTGGTTGGGCT--AAAACAGGATTATATTACGATATAGTGGAGAAAATCT 453
Query 500 TCACTAAAGCTTTGGAG-AGAAATGATGCTGGAGAGCATTTCCCAGTATATGGCATTTGC 558
||| ||||| ||||||| || || ||||||||||| ||||| || || |||| ||| ||
Sbjct 454 TCAATAAAGTTTTGGAGAAG-AACGATGCTGGAGAACATTTTCCGGTGTATGCCATGTGT 512
Query 559 CTCGGATTCGAGCTTATGTCAATTATCATAAGTCAGAACAGAGACATTCTTGAAAGATTT 618
|| ||||||||| || ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 513 CTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAAAGGTTT 572
Query 619 GA-TGCAG-AGGA-TAATGCATCAAGTCTCCAGTTTGTTGATAATGTTAATAACGATGGA 675
|| | ||| | | || ||||||||||||||||||| |||| |||||||||| ||| |
Sbjct 573 GACT-CAGTAA-ACTA-TGCATCAAGTCTCCAGTTTTTTGAAAATGTTAATATCGAAGCT 629
Query 676 ACATTATTCCAAAGATTTCCGCCAGAGTTGTTGAAAAAACTCAGTACAGATTGTTTGGTT 735
|| | |||||||||||||| |||||| |||||||||||||||||||||| |||||||||
Sbjct 630 ACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGACTGTTTGGTT 689
Query 736 ATGCAGAAACACAAGTATGGTATCACACCAG-CAAACTTTCAAGCCAATCCTGCTTTGTC 794
|||||||| ||| | | ||||||| |||||| ||| ||| |||| ||||||| || ||||
Sbjct 690 ATGCAGAACCACTATTTTGGTATCTCACCAGACAA-CTTCCAAGGCAATCCTTCTCTGTC 748
Query 795 TAGTTTCTTTGAA-ATTCTCACAACCTGCATTGATGAAA-ACAGCAAGACTTATGTTTCA 852
||||||||| || || ||||||||| || |||| ||| |||||||||||| |||||||
Sbjct 749 TAGTTTCTTC-AATATCCTCACAACCAGCGCTGAT-AAAGACAGCAAGACTTTTGTTTCA 806
Query 853 ACTGTTAAAGCAAAGAG-ATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGC 911
||| || | |||| || |||||| | || | ||||||||||||||| |||||||||||
Sbjct 807 ACTATTCGATCAAA-AGGATACCCTGTGACCGCCTTCCAGTGGCATCCAGAGAAAAATGC 865
Query 912 ATTTGAATGGGGATCATCTGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCA 971
||| |||||||||||||| | || |||||||||||||| ||||| |||||||| ||| |
Sbjct 866 ATTCGAATGGGGATCATCCGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTCAGTA 925
Query 972 TGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAGAGTCTCAGAA 1031
|||||| | |||| |||||||||||||||| |||||| ||||||||||| ||| ||||
Sbjct 926 TGCTGCAAATTATCTAGTCAGTGAAGCTAGAAAGTCAATGAACAGACCATCTTCTGAGAA 985
Query 1032 AGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGG 1091
|||||||||||||||||| ||||| || |||||||| |||| |||||| |||||| ||
Sbjct 986 AGTGCTGAGCAATCTCATCTACAATTACAAGCCTACATACTCCGGATACAAAGGGAGCGG 1045
Query 1092 TTACGACGAGGTTTACATTTT 1112
| |||||||||||||||||||
Sbjct 1046 TGACGACGAGGTTTACATTTT 1066
> Ahg951931 jgi|Araly1|951931|scaffold_26200002.1
Length=1093
Score = 728 bits (394), Expect = 0.0
Identities = 670/802 (84%), Gaps = 24/802 (3%)
Strand=Plus/Plus
Query 323 CGTACATCGCTGCTTCGTATGTGAAGTTCGCTGAGGCAGGTGGTGCTCGTGTTATCCCAC 382
|||||||||| ||||||||||||||||| |||||| | ||||| |||||||| || || |
Sbjct 277 CGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTC 336
Query 383 TCATCTACAACGAACCTGAAGAAGTGC-TCTTCCAGAAGCTAGAGTTGGTCAACGGTGTG 441
| ||||||||||| ||||||||| | | | || || |||||||| |||| || ||||||
Sbjct 337 TTATCTACAACGAGCCTGAAGAACT-CTTGTTTCAAAAGCTAGAACTGGTGAATGGTGTG 395
Query 442 ATATTCACTGGTGGTTGGGCTAAAAAATATGATTAT-TT-CGAGATCGTCaaaaaaaTCT 499
||||||||||||||||||||| |||| | |||||| || ||| || || | |||||||
Sbjct 396 ATATTCACTGGTGGTTGGGCT--AAAACAGGATTATATTACGATATAGTGGAGAAAATCT 453
Query 500 TCACTAAAGCTTTGGAG-AGAAATGATGCTGGAGAGCATTTCCCAGTATATGGCATTTGC 558
||| ||||| ||||||| || || ||||||||||| ||||| || || |||| ||| ||
Sbjct 454 TCAATAAAGTTTTGGAGAAG-AACGATGCTGGAGAACATTTTCCGGTGTATGCCATGTGT 512
Query 559 CTCGGATTCGAGCTTATGTCAATTATCATAAGTCAGAACAGAGACATTCTTGAAAGATTT 618
|| ||||||||| || ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 513 CTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAAAGGTTT 572
Query 619 GA-TGCAG-AGGA-TAATGCATCAAGTCTCCAGTTTGTTGATAATGTTAATAACGATGGA 675
| | ||| | | || ||||||||||||||||||| |||| |||||||||| || | |
Sbjct 573 AACT-CAGTAA-ACTA-TGCATCAAGTCTCCAGTTTTTTGAAAATGTTAATATTGAAGCA 629
Query 676 ACATTATTCCAAAGATTTCCGCCAGAGTTGTTGAAAAAACTCAGTACAGATTGTTTGGTT 735
|| | |||||||||||||| |||||| |||||||||| || |||||||| |||||||||
Sbjct 630 ACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTTAGTACAGACTGTTTGGTT 689
Query 736 ATGCAGAAAC-ACAAGTATGGTATCACACCAG-CAAACTTTCAAGCCAATCCTGCTTTGT 793
||||| |||| || | | ||||||| |||||| ||| |||||||| ||| ||| || |||
Sbjct 690 ATGCA-AAACCACTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAAGCCTTCTCTGT 747
Query 794 CTAGTTTCTTTGAA-ATTCTCACAACCTGCATTGATGAAA-ACAGCAAGACTTATGTTTC 851
|||||||||| || || ||||||||| || |||| ||| |||||||||||| ||||||
Sbjct 748 CTAGTTTCTTC-AATATCCTCACAACCAGCGCTGAT-AAAGACAGCAAGACTTTTGTTTC 805
Query 852 AACTGTTAAAGCAAAGAG-ATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATG 910
|||| || | |||| || |||||| | || | ||||||||||||||| ||||||||||
Sbjct 806 AACTATTCGATCAAA-AGGATACCCTGTGACCGCCTTCCAGTGGCATCCAGAGAAAAATG 864
Query 911 CATTTGAATGGGGATCATCTGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGC 970
|||| |||||||||||||| | || |||||||||||||| ||||| |||||||| |||
Sbjct 865 CATTCGAATGGGGATCATCCGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTCAGT 924
Query 971 ATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAGAGTCTCAGA 1030
||||||| | |||| |||||||||||||||| |||||| ||||||||||| ||| |||
Sbjct 925 ATGCTGCAAATTATCTAGTCAGTGAAGCTAGAAAGTCAATGAACAGACCATCTTCTGAGA 984
Query 1031 AAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGG 1090
||||||||||||||||||| ||||| || |||||||| |||| |||||| |||||| |
Sbjct 985 AAGTGCTGAGCAATCTCATCTACAATTACAAGCCTACATACTCCGGATACAAAGGGAGCG 1044
Query 1091 GTTACGACGAGGTTTACATTTT 1112
|| |||||||||||||||||||
Sbjct 1045 GTGACGACGAGGTTTACATTTT 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5