BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78670.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951931 jgi|Araly1|951931|scaffold_26200002.1 1611 0.0
Ahg927282 jgi|Araly1|927282|scaffold_202843.1 1611 0.0
Ahg951932 jgi|Araly1|951932|scaffold_26200003.1 736 0.0
Ahg477030 jgi|Araly1|477030|fgenesh2_kg.2__2160__AT1G78660.2 728 0.0
Ahg316768 jgi|Araly1|316768|fgenesh1_pm.C_scaffold_2001801 695 0.0
Ahg359459 jgi|Araly1|359459|fgenesh1_pg.C_scaffold_262000001 569 1e-161
> Ahg951931 jgi|Araly1|951931|scaffold_26200002.1
Length=1093
Score = 1611 bits (872), Expect = 0.0
Identities = 1019/1090 (93%), Gaps = 9/1090 (1%)
Strand=Plus/Plus
Query 88 GTGCCATCTTCATCCTCTGAGATGTGGAGATTCTGCTTCTTCTTATCGTTACTATTCTTT 147
||| |||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||
Sbjct 1 GTG-CATCTTCATCCTCTGAGATGTGGAGATTCTACTTCTGCTTACCGTTCCTACTCTTT 59
Query 148 GATGTTAGCGCGGTGAAATCTGCAGAATCGATTTTCCTCCCAAGTCAAATCGGAGTTGAA 207
||| ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 60 GATATTAGCGCGGCGACTTCTGCCGAATCGATTTTCCTCCCAAGTCAAATCCGAGTTGAC 119
Query 208 GATTCCCGCGTCTTTGAAT-CTCTTAGTCTTAGTCCTGTATGCTCCGCGGCTGATCCAAA 266
|||||||||||||| || | | || ||||| |||||||||| | | ||||| ||
Sbjct 120 TCTTCCCGCGTCTTTG-ATACACGGAG---TAGTCATGTATGCTCCTCCCCGGATCCGAA 175
Query 267 CCTCAACTACAAGCCGGTCATCGGGATTCTGACCCACCCTGGCGAAGGTCGATGGGACGC 326
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 176 CCTCAACTACAAGCCGGTCATTGGGATTCTGACCCACCCTGGCGAAGGTCGATGGGACGC 235
Query 327 TCGTCTTCACTCTCTGAAAAACTACGCCTACGCGACGAACATATCGTACATCGCAGCTTC 386
| ||| |||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 236 TGGTCGTCACTCTCTG---AGCTACGCCTACTCGACGAACATATCGTACATCGCAGCTTC 292
Query 387 GTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTCTTATCTACAACGAGCC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTCTTATCTACAACGAGCC 352
Query 447 TGAAGAAATCTTGTTTCAGAAGCTAGAATTGGTAAATGGTGTGATATTCACAGGTGGTTG 506
||||||| |||||||||| ||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 353 TGAAGAACTCTTGTTTCAAAAGCTAGAACTGGTGAATGGTGTGATATTCACTGGTGGTTG 412
Query 507 GGCTAAAACAGGGTTATATTACGATGTTGTGGAGAAAATCTTCAATAAAGTTATGGAGAA 566
|||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 413 GGCTAAAACAGGATTATATTACGATATAGTGGAGAAAATCTTCAATAAAGTTTTGGAGAA 472
Query 567 AAATGATGCTGGAGAACATTTTCCGGTGTACGCCATGTGTCTTGGATTCGAGATTTTGTC 626
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 473 GAACGATGCTGGAGAACATTTTCCGGTGTATGCCATGTGTCTTGGATTCGAGATTTTGTC 532
Query 627 AATGATCATAAGTCAGAACAGAGACATTCTTGAGAGGTTTAACTCAGTAAACTATGCATC 686
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 533 AATGATCATAAGTCAGAACAGAGACATTCTTGAAAGGTTTAACTCAGTAAACTATGCATC 592
Query 687 AAGTCTCCAGTTTTTTAAAAACGTTAATATCGAAGCAACCGTGTTCCAAAGATTTCCTCC 746
|||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 593 AAGTCTCCAGTTTTTTGAAAATGTTAATATTGAAGCAACCGTGTTCCAAAGATTTCCTCC 652
Query 747 AGAGCTGTTGAAAAAGCTCAGTGCAGACTGTTTGGTTATGCAGAACCACTATTTTGGTAT 806
|||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||
Sbjct 653 AGAGCTGTTGAAAAAGCTTAGTACAGACTGTTTGGTTATGCAAAACCACTATTTTGGTAT 712
Query 807 CTCACCAGACAACTTTCAAGGCAATCCTTATCTGTCTAGTTTCTTCAATATCGTCACAAC 866
|||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||
Sbjct 713 CTCACCAGACAACTTTCAAGGCAAGCCTTCTCTGTCTAGTTTCTTCAATATCCTCACAAC 772
Query 867 CAGCGCCGATAAAGACAGCAAGACTTTTGTTTCAACTATTCGATCAAAACGATACCCTGT 926
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 773 CAGCGCTGATAAAGACAGCAAGACTTTTGTTTCAACTATTCGATCAAAAGGATACCCTGT 832
Query 927 GACCGCCTTCCAATGGCATCCAGAGAAAAATGCATTCGAATGGGGATCATCTGAAATCCC 986
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 833 GACCGCCTTCCAGTGGCATCCAGAGAAAAATGCATTCGAATGGGGATCATCCGAAATCCC 892
Query 987 ACACTCTGAGGACGCAATTCAGGTGACTCAACATGCTGCAAATTATCTAGTCAGTGAAGC 1046
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 ACACTCTGAGGACGCAATTCAGGTGACTCAGTATGCTGCAAATTATCTAGTCAGTGAAGC 952
Query 1047 CAGAAAGTCAATGAACAGACCATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAACTA 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 953 TAGAAAGTCAATGAACAGACCATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAATTA 1012
Query 1107 CAAGCCTACGTACTCCGGATACAAAGGGAGCGGTGACGACGAGGTTTATATTTTCACGTA 1166
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1013 CAAGCCTACATACTCCGGATACAAAGGGAGCGGTGACGACGAGGTTTACATTTTCATGTA 1072
Query 1167 ACAAAGATCC 1176
| ||||||||
Sbjct 1073 ATAAAGATCC 1082
> Ahg927282 jgi|Araly1|927282|scaffold_202843.1
Length=1093
Score = 1611 bits (872), Expect = 0.0
Identities = 1019/1090 (93%), Gaps = 9/1090 (1%)
Strand=Plus/Plus
Query 88 GTGCCATCTTCATCCTCTGAGATGTGGAGATTCTGCTTCTTCTTATCGTTACTATTCTTT 147
||| |||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||
Sbjct 1 GTG-CATCTTCATCCTCTGAGATGTGGAGATTCTACTTCTGCTTACCGTTCCTACTCTTT 59
Query 148 GATGTTAGCGCGGTGAAATCTGCAGAATCGATTTTCCTCCCAAGTCAAATCGGAGTTGAA 207
||| ||||||||| || ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 60 GATATTAGCGCGGCGACTTCTGCCGAATCGATTTTCCTCCCAAGTCAAATCCGAGTTGAC 119
Query 208 GATTCCCGCGTCTTTGAAT-CTCTTAGTCTTAGTCCTGTATGCTCCGCGGCTGATCCAAA 266
|||||||||||||| || | | || ||||| |||||||||| | | ||||| ||
Sbjct 120 TCTTCCCGCGTCTTTG-ATACACGGAG---TAGTCATGTATGCTCCTCCCCGGATCCGAA 175
Query 267 CCTCAACTACAAGCCGGTCATCGGGATTCTGACCCACCCTGGCGAAGGTCGATGGGACGC 326
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 176 CCTCAACTACAAGCCGGTCATTGGGATTCTGACCCACCCTGGCGAAGGTCGATGGGACGC 235
Query 327 TCGTCTTCACTCTCTGAAAAACTACGCCTACGCGACGAACATATCGTACATCGCAGCTTC 386
| ||| |||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 236 TGGTCGTCACTCTCTG---AGCTACGCCTACTCGACGAACATATCGTACATCGCAGCTTC 292
Query 387 GTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTCTTATCTACAACGAGCC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTCTTATCTACAACGAGCC 352
Query 447 TGAAGAAATCTTGTTTCAGAAGCTAGAATTGGTAAATGGTGTGATATTCACAGGTGGTTG 506
||||||| |||||||||| ||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 353 TGAAGAACTCTTGTTTCAAAAGCTAGAACTGGTGAATGGTGTGATATTCACTGGTGGTTG 412
Query 507 GGCTAAAACAGGGTTATATTACGATGTTGTGGAGAAAATCTTCAATAAAGTTATGGAGAA 566
|||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 413 GGCTAAAACAGGATTATATTACGATATAGTGGAGAAAATCTTCAATAAAGTTTTGGAGAA 472
Query 567 AAATGATGCTGGAGAACATTTTCCGGTGTACGCCATGTGTCTTGGATTCGAGATTTTGTC 626
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 473 GAACGATGCTGGAGAACATTTTCCGGTGTATGCCATGTGTCTTGGATTCGAGATTTTGTC 532
Query 627 AATGATCATAAGTCAGAACAGAGACATTCTTGAGAGGTTTAACTCAGTAAACTATGCATC 686
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 533 AATGATCATAAGTCAGAACAGAGACATTCTTGAAAGGTTTGACTCAGTAAACTATGCATC 592
Query 687 AAGTCTCCAGTTTTTTAAAAACGTTAATATCGAAGCAACCGTGTTCCAAAGATTTCCTCC 746
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 593 AAGTCTCCAGTTTTTTGAAAATGTTAATATCGAAGCTACCGTGTTCCAAAGATTTCCTCC 652
Query 747 AGAGCTGTTGAAAAAGCTCAGTGCAGACTGTTTGGTTATGCAGAACCACTATTTTGGTAT 806
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 653 AGAGCTGTTGAAAAAACTCAGTACAGACTGTTTGGTTATGCAGAACCACTATTTTGGTAT 712
Query 807 CTCACCAGACAACTTTCAAGGCAATCCTTATCTGTCTAGTTTCTTCAATATCGTCACAAC 866
||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 713 CTCACCAGACAACTTCCAAGGCAATCCTTCTCTGTCTAGTTTCTTCAATATCCTCACAAC 772
Query 867 CAGCGCCGATAAAGACAGCAAGACTTTTGTTTCAACTATTCGATCAAAACGATACCCTGT 926
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 773 CAGCGCTGATAAAGACAGCAAGACTTTTGTTTCAACTATTCGATCAAAAGGATACCCTGT 832
Query 927 GACCGCCTTCCAATGGCATCCAGAGAAAAATGCATTCGAATGGGGATCATCTGAAATCCC 986
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 833 GACCGCCTTCCAGTGGCATCCAGAGAAAAATGCATTCGAATGGGGATCATCCGAAATCCC 892
Query 987 ACACTCTGAGGACGCAATTCAGGTGACTCAACATGCTGCAAATTATCTAGTCAGTGAAGC 1046
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 ACACTCTGAGGACGCAATTCAGGTGACTCAGTATGCTGCAAATTATCTAGTCAGTGAAGC 952
Query 1047 CAGAAAGTCAATGAACAGACCATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAACTA 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 953 TAGAAAGTCAATGAACAGACCATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAATTA 1012
Query 1107 CAAGCCTACGTACTCCGGATACAAAGGGAGCGGTGACGACGAGGTTTATATTTTCACGTA 1166
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1013 CAAGCCTACATACTCCGGATACAAAGGGAGCGGTGACGACGAGGTTTACATTTTCATGTA 1072
Query 1167 ACAAAGATCC 1176
| ||||||||
Sbjct 1073 ATAAAGATCC 1082
> Ahg951932 jgi|Araly1|951932|scaffold_26200003.1
Length=1087
Score = 736 bits (398), Expect = 0.0
Identities = 781/960 (81%), Gaps = 49/960 (5%)
Strand=Plus/Plus
Query 238 AGTCCTGTATGCTCCGCGGCTGATCCAAACCTCAACTACAAGCCGGTCATCGGGATTCTG 297
||||| |||||||||||| | ||||| |||||||| |||| |||||| || |||||||||
Sbjct 141 AGTCCGGTATGCTCCGCGCCGGATCCGAACCTCAATTACAGGCCGGTTATTGGGATTCTG 200
Query 298 ACCCACCCTGGCGAAGGTCGATGGGACGCTCGTCTTCACTCTCTGAAAAACTACGCCTAC 357
| ||| ||||| | | || | | || ||| || | | ||| || | | ||||
Sbjct 201 AGCCATCCTGGTG-A---CG--GTG-CG-TCG-GGTC-GT-T-TGAGCAA-T--G-CTAC 244
Query 358 GCGACGAACATATCGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCT 417
|||| | |||| ||| || |||||||||||||| ||||||||| ||||||||||
Sbjct 245 -AGACG--C--GTCGTCCATTGCGGCTTCGTATGTGAAATTAGCTGAGTCTGGTGGAGCA 299
Query 418 CGTGTGATTCCTCTTATCTACAACGAGCCTGAAGAAA-TCTTGTTTCAGAAGCTAGAATT 476
|||||||| || || ||||| ||||| |||||||||| || | |||||||||||||||||
Sbjct 300 CGTGTGATCCCACTCATCTATAACGATCCTGAAGAAATTC-TCTTTCAGAAGCTAGAATT 358
Query 477 GGTAAATGGTGTGATATTCACAGGTGGTTGGGCTAAA-ACAGGGTTATATTACGATGTTG 535
||| || ||||||||| |||| ||||||||||||||| | ||| || |||| || | |
Sbjct 359 GGTCAACGGTGTGATACTCACTGGTGGTTGGGCTAAAGA-AGGATTGTATTTTGAAATCG 417
Query 536 TGGAGAAAATCTTCAATAAAGTTATGGAGAA-AAATGATGCTGGAGAACATTTTCCGGTG 594
| |||||||||||||||||||| |||| || ||||||||||||||| |||||||| |
Sbjct 418 TCAAGAAAATCTTCAATAAAGTTTTGGA-AAGAAATGATGCTGGAGAGCATTTTCCTATA 476
Query 595 TACGCCATGTGTCTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATT 654
||||| || || || ||||| ||| | ||| |||||||||||||||||||||||||||||
Sbjct 477 TACGCTATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGTCAGAACAGAGACATT 536
Query 655 CTTGAGAGGTTTAACT-CA-GTAAACTATGCATCAAGTCTCCAGTTTTTTAAAAACGTTA 712
|||| | | | | || | ||| | |||||||||||| ||||| || |||| ||||
Sbjct 537 TTTGAAAAAATGGA-TGCAAG-AAATTCTGCATCAAGTCTTCAGTTCCTTGAAAATGTTA 594
Query 713 ATATCGAAGCAACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTCAGTGCAG 772
||||| ||| |||| | |||||||||||||||||||| ||||||||||| ||| || |||
Sbjct 595 ATATCCAAGGAACCATTTTCCAAAGATTTCCTCCAGAACTGTTGAAAAAACTCGGTACAG 654
Query 773 ACTGTTTGGTTATGCAGAACCA-CTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAA 830
| ||||| |||||||||||||| | ||| |||||||||||||| || |||| |||||||
Sbjct 655 ATTGTTTAGTTATGCAGAACCATCGGTTT-GGTATCTCACCAGA-AAGCTTTGAAGGCAA 712
Query 831 TCCTTA-TCTGTCTAGTTTCTTCAATATCGTCACAACCAGCGCCGATAA-AGACAGCAAG 888
| || |||||| |||||||| || ||||||||||| |||| ||||| | ||||||||
Sbjct 713 TG-TTGCTCTGTCCAGTTTCTTTAAAATCGTCACAACAAGCGTTGATAACA-ACAGCAAG 770
Query 889 ACTTT-TGTTTCAACTA-TTCGATCAAAACGATACCCTGTGACCGCCTTCCAATGGCATC 946
||| ||||||||| | ||| ||||||| ||| || ||||||| |||||| |||||||
Sbjct 771 G-TTTATGTTTCAAC-AGTTCAATCAAAAAAATATCCAGTGACCGGCTTCCAGTGGCATC 828
Query 947 CAGAGAAAAATGCATTCGAATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATTC 1006
| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| || |
Sbjct 829 CCGAGAAAAATGCATTCGAGTGGGGATCATCCAAAATTCCACACTCTGAGGACGCGATCC 888
Query 1007 AGGTGACTCAACATGCTGCAAATTATCTAGTCAGTGAAGCCAGAAAGTCAATGAACAGAC 1066
|||||||||| || || |||||| |||||||||||||||| || |||||| ||||||| |
Sbjct 889 AGGTGACTCAGCACGCAGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGGC 948
Query 1067 C--ATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAACTACAAGCCTACGTACTCCGG 1124
| | || || |||||||||||||||||||||| || |||||||||||||| |||| ||
Sbjct 949 CGGA-CT-CTAAGAAAGTGCTGAGCAATCTCATTTATAACTACAAGCCTACCTACTGTGG 1006
Query 1125 ATACAAAGGGA-GCGGTGACGACGAGGTTTATATTTTCACGTAACAAAGATCCCTTCTCT 1183
|||| ||||| | ||| ||||||||||||| || ||||| | ||| ||||||||||||
Sbjct 1007 ATACGCAGGGAAG-GGTTACGACGAGGTTTACATCTTCACACAGCAACGATCCCTTCTCT 1065
> Ahg477030 jgi|Araly1|477030|fgenesh2_kg.2__2160__AT1G78660.2
Length=1205
Score = 728 bits (394), Expect = 0.0
Identities = 686/826 (83%), Gaps = 24/826 (3%)
Strand=Plus/Plus
Query 371 CGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCTCGTGTGATTCCTC 430
|||||||||| ||||| ||||| ||||| |||||| | |||||||||||||| || || |
Sbjct 258 CGTACATCGCGGCTTCCTATGTAAAGTTCGCTGAGGCAGGTGGAGCTCGTGTTATCCCAC 317
Query 431 TTATCTACAACGAGCCTGAAGAAATCTTGTTTCAGAAGCTAGAATTGGTAAATGGTGTGA 490
| ||||||||||| ||||||||| || | ||||||||||||||| |||| || |||||||
Sbjct 318 TCATCTACAACGAACCTGAAGAACTCCTCTTTCAGAAGCTAGAACTGGTCAACGGTGTGA 377
Query 491 TATTCACAGGTGGTTGGGCT--AAAACAGGGTTATATTACGATG-TTGTGGAGAAAATCT 547
||||||| |||||||||||| |||| | | |||| || ||| | | || | |||||||
Sbjct 378 TATTCACTGGTGGTTGGGCTAAAAAATATGATTAT-TT-CGA-GATCGTCAAAAAAATCT 434
Query 548 TCAATAAAG-TTATGGAGAAAAATGATGCTGGAGAACATTTTCCGGTGTACGCCATGTGT 606
|||||| || || |||||| ||||||||||||||| |||||||| || || | ||| |||
Sbjct 435 TCAATAGAGCTT-TGGAGAGAAATGATGCTGGAGAGCATTTTCCAGTTTATGGCATTTGT 493
Query 607 CTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAGAGGTTT 666
|| ||||||||| || ||||||| ||||| ||||||||||||||||||||||| || |||
Sbjct 494 CTCGGATTCGAGCTTATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTT 553
Query 667 AACT-CAGTA-AACT-ATGCATCAAGTCTCCAGTTTTTTAAAAACGTTAATATCGAAGCA 723
| | ||| | | | ||||||||| || |||||| || | || ||||||||||| | |
Sbjct 554 GA-TGCAG-AGGA-TAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGA 610
Query 724 ACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTCAGTGCAGACTGTTTGGTT 783
|| | |||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 611 ACATTATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTT 670
Query 784 ATGCAGAACCACTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAATCCTTATCTGTC 842
|||||||| ||| | | ||||||| |||||| ||| |||||||||||||||| | ||||
Sbjct 671 ATGCAGAAACACAAGTATGGTATCACACCAG-CAAACTTTCAAGGCAATCCTGCTTTGTC 729
Query 843 TAGTTTCTTC-AATATCGTCACAACCAGCGCCGAT-AAAGACAGCAAGACTTTTGTTTCA 900
||||||||| || ||| |||||||| || ||| ||| |||||||||||| |||||||
Sbjct 730 TAGTTTCTTTGAA-ATCCTCACAACCTGCATAGATGAAA-ACAGCAAGACTTATGTTTCA 787
Query 901 ACTATTCGATCAAA-ACGATACCCTGTGACCGCCTTCCAATGGCATCCAGAGAAAAATGC 959
||| || | |||| | ||||||| | || | |||||| |||||||| |||||||||||
Sbjct 788 ACTGTTAAAGCAAAGA-GATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGC 846
Query 960 ATTCGAATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTCAACA 1019
||| |||||||||||||| | || |||||||||||||| ||||| |||||||| || ||
Sbjct 847 ATTTGAATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCA 906
Query 1020 TGCTGCAAATTATCTAGTCAGTGAAGCCAGAAAGTCAATGAACAGACCATCTTCTGAGAA 1079
|||||| | |||| ||||||||||||| || |||||| ||||||||||| | || ||||
Sbjct 907 TGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCATCAAAGAA 966
Query 1080 AGTGCTGAGCAATCTCATCTACAACTACAAGCCTACGTACTCCGGATACAAAGGGAGCGG 1139
|||||| ||||||||||| |||||||| |||||||| |||| |||||| |||||| ||
Sbjct 967 AGTGCTAAGCAATCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGG 1026
Query 1140 TGACGACGAGGTTTATATTTTCACGTAACAAAGATCCC-TTCTCTG 1184
| ||||||||||||| |||||||| ||| |||||||| || ||||
Sbjct 1027 TTACGACGAGGTTTACATTTTCACACAACCAAGATCCCGTT-TCTG 1071
> Ahg316768 jgi|Araly1|316768|fgenesh1_pm.C_scaffold_2001801
Length=1032
Score = 695 bits (376), Expect = 0.0
Identities = 765/947 (81%), Gaps = 49/947 (5%)
Strand=Plus/Plus
Query 238 AGTCCTGTATGCTCCGCGGCTGATCCAAACCTCAACTACAAGCCGGTCATCGGGATTCTG 297
||||| |||||||||||| | ||||| |||||||| |||| |||||| || |||||||||
Sbjct 118 AGTCCGGTATGCTCCGCGCCGGATCCGAACCTCAATTACAGGCCGGTTATTGGGATTCTG 177
Query 298 ACCCACCCTGGCGAAGGTCGATGGGACGCTCGTCTTCACTCTCTGAAAAACTACGCCTAC 357
| ||| ||||| | | || | | || ||| || | | ||| || | | ||||
Sbjct 178 AGCCATCCTGGTG-A---CG--GTG-CG-TCG-GGTC-GT-T-TGAGCAA-T--G-CTAC 221
Query 358 GCGACGAACATATCGTACATCGCAGCTTCGTATGTGAAGTTAGCTGAGACTGGTGGAGCT 417
|||| | |||| ||| || |||||||||||||| ||||||||| ||||||||||
Sbjct 222 -AGACG--C--GTCGTCCATTGCGGCTTCGTATGTGAAATTAGCTGAGTCTGGTGGAGCA 276
Query 418 CGTGTGATTCCTCTTATCTACAACGAGCCTGAAGAAA-TCTTGTTTCAGAAGCTAGAATT 476
|||||||| || || ||||| ||||| |||||||||| || | |||||||||||||||||
Sbjct 277 CGTGTGATCCCACTCATCTATAACGATCCTGAAGAAATTC-TCTTTCAGAAGCTAGAATT 335
Query 477 GGTAAATGGTGTGATATTCACAGGTGGTTGGGCTAAA-ACAGGGTTATATTACGATGTTG 535
||| || ||||||||| |||| ||||||||||||||| | ||| || |||| || | |
Sbjct 336 GGTCAACGGTGTGATACTCACTGGTGGTTGGGCTAAAGA-AGGATTGTATTTTGAAATCG 394
Query 536 TGGAGAAAATCTTCAATAAAGTTATGGAGAA-AAATGATGCTGGAGAACATTTTCCGGTG 594
| |||||||||||||||||||| |||| || ||||||||||||||| |||||||| |
Sbjct 395 TCAAGAAAATCTTCAATAAAGTTTTGGA-AAGAAATGATGCTGGAGAGCATTTTCCTATA 453
Query 595 TACGCCATGTGTCTTGGATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATT 654
||||| || || || ||||| ||| | ||| |||||||||||||||||||||||||||||
Sbjct 454 TACGCTATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGTCAGAACAGAGACATT 513
Query 655 CTTGAGAGGTTTAACT-CA-GTAAACTATGCATCAAGTCTCCAGTTTTTTAAAAACGTTA 712
|||| | | | | || | ||| | |||||||||||| ||||| || |||| ||||
Sbjct 514 TTTGAAAAAATGGA-TGCAAG-AAATTCTGCATCAAGTCTTCAGTTCCTTGAAAATGTTA 571
Query 713 ATATCGAAGCAACCGTGTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTCAGTGCAG 772
||||| ||| |||| | |||||||||||||||||||| ||||||||||| ||| || |||
Sbjct 572 ATATCCAAGGAACCATTTTCCAAAGATTTCCTCCAGAACTGTTGAAAAAACTCGGTACAG 631
Query 773 ACTGTTTGGTTATGCAGAACCA-CTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAA 830
| ||||| |||||||||||||| | ||| |||||||||||||| || |||| |||||||
Sbjct 632 ATTGTTTAGTTATGCAGAACCATCGGTTT-GGTATCTCACCAGA-AAGCTTTGAAGGCAA 689
Query 831 TCCTTA-TCTGTCTAGTTTCTTCAATATCGTCACAACCA-GCGCCGATAA-AGACAGCAA 887
| || |||||| |||||||| || ||||||||||| | ||| ||||| | ||| |||
Sbjct 690 TG-TTGCTCTGTCCAGTTTCTTTAAAATCGTCACAAC-ATGCGTTGATAACA-ACAACAA 746
Query 888 GACTTT-TGTTTCAACTA-TTCGATCAAAACGATACCCTGTGACCGCCTTCCAATGGCAT 945
| ||| ||||||||| | ||| ||||||| ||| || ||||||| |||||| ||||||
Sbjct 747 GG-TTTATGTTTCAAC-AGTTCAATCAAAAAAATATCCAGTGACCGGCTTCCAGTGGCAT 804
Query 946 CCAGAGAAAAATGCATTCGAATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATT 1005
|| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||
Sbjct 805 CCCGAGAAAAATGCATTCGAGTGGGGATCATCCAAAATTCCACACTCTGAGGACGCGATC 864
Query 1006 CAGGTGACTCAACATGCTGCAAATTATCTAGTCAGTGAAGCCAGAAAGTCAATGAACAGA 1065
||||||||||| || || |||||| |||||||||||||||| || |||||| |||||||
Sbjct 865 CAGGTGACTCAGCACGCAGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGG 924
Query 1066 CC--ATCTTCTGAGAAAGTGCTGAGCAATCTCATCTACAACTACAAGCCTACGTACTCCG 1123
|| | || || ||||||||||||| ||||||| || | |||||||||||| |||| |
Sbjct 925 CCGGA-CT-CTAAGAAAGTGCTGAGTTATCTCATTTATAGCTACAAGCCTACCTACTGTG 982
Query 1124 GATACAAAGGGAGCGGTGACGACGAGGTTTATATTTTCACGTAACAA 1170
||||| ||||| ||| ||||||||||||| || ||||| |||||
Sbjct 983 GATACGCAGGGAATGGTTACGACGAGGTTTACATCTTCACACAACAA 1029
> Ahg359459 jgi|Araly1|359459|fgenesh1_pg.C_scaffold_262000001
Length=633
Score = 569 bits (308), Expect = 1e-161
Identities = 533/641 (83%), Gaps = 18/641 (3%)
Strand=Plus/Plus
Query 553 AAAG-TTATGGAGAAAAATGATGCTGGAGAACATTTTCCGGTGTACGCCATGTGTCTTGG 611
|||| || |||||| ||||||||||||||| |||||||| || || | ||| ||||| ||
Sbjct 1 AAAGCTT-TGGAGAGAAATGATGCTGGAGAGCATTTTCCAGTTTATGGCATTTGTCTCGG 59
Query 612 ATTCGAGATTTTGTCAATGATCATAAGTCAGAACAGAGACATTCTTGAGAGGTTTAACT- 670
||||||| || ||||||| ||||| ||||||||||||||||||||||| || ||| | |
Sbjct 60 ATTCGAGCTTATGTCAATTATCATCAGTCAGAACAGAGACATTCTTGAAAGATTTGA-TG 118
Query 671 CAGTA-AACT-ATGCATCAAGTCTCCAGTTTTTTAAAAACGTTAATATCGAAGCAACCGT 728
||| | | | ||||||||| || |||||| || | || ||||||||||| | ||| |
Sbjct 119 CAG-AGGA-TAATGCATCAACCCTACAGTTTGTTGATAATGTTAATATCGATGGAACATT 176
Query 729 GTTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAGCTCAGTGCAGACTGTTTGGTTATGCA 788
|||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 177 ATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCA 236
Query 789 GAACCACTATTTTGGTATCTCACCAGACAA-CTTTCAAGGCAATCCTTATCTGTCTAGTT 847
||| ||| | | ||||||| |||||| ||| |||||||||||||||| | |||||||||
Sbjct 237 GAAACACAAGTATGGTATCACACCAG-CAAACTTTCAAGGCAATCCTGCTTTGTCTAGTT 295
Query 848 TCTTC-AATATCGTCACAACCAGCGCCGAT-AAAGACAGCAAGACTTTTGTTTCAACTAT 905
|||| || ||| |||||||| || ||| ||| |||||||||||| |||||||||| |
Sbjct 296 TCTTTGAA-ATCCTCACAACCTGCATAGATGAAA-ACAGCAAGACTTATGTTTCAACTGT 353
Query 906 TCGATCAAA-ACGATACCCTGTGACCGCCTTCCAATGGCATCCAGAGAAAAATGCATTCG 964
| | |||| | ||||||| | || | |||||| |||||||| |||||||||||||| |
Sbjct 354 TAAAGCAAAGA-GATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTG 412
Query 965 AATGGGGATCATCTGAAATCCCACACTCTGAGGACGCAATTCAGGTGACTCAACATGCTG 1024
||||||||||||| | || |||||||||||||| ||||| |||||||| || |||||||
Sbjct 413 AATGGGGATCATCCGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTG 472
Query 1025 CAAATTATCTAGTCAGTGAAGCCAGAAAGTCAATGAACAGACCATCTTCTGAGAAAGTGC 1084
| | |||| ||||||||||||| || |||||| ||||||||||| | || |||||||||
Sbjct 473 CTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCACCATCAAAGAAAGTGC 532
Query 1085 TGAGCAATCTCATCTACAACTACAAGCCTACGTACTCCGGATACAAAGGGAGCGGTGACG 1144
| ||||||||||| |||||||| |||||||| |||| |||||| |||||| ||| |||
Sbjct 533 TAAGCAATCTCATATACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACG 592
Query 1145 ACGAGGTTTATATTTTCACGTAACAAAGATCCC-TTCTCTG 1184
|||||||||| |||||||| ||| |||||||| || ||||
Sbjct 593 ACGAGGTTTACATTTTCACACAACCAAGATCCCGTT-TCTG 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5