BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78690.1
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477033 jgi|Araly1|477033|fgenesh2_kg.2__2163__AT1G78690.1 1711 0.0
Ahg497362 jgi|Araly1|497362|fgenesh2_kg.262__3__AT1G78690.1 1247 0.0
> Ahg477033 jgi|Araly1|477033|fgenesh2_kg.2__2163__AT1G78690.1
Length=1142
Score = 1711 bits (926), Expect = 0.0
Identities = 1074/1146 (94%), Gaps = 8/1146 (1%)
Strand=Plus/Plus
Query 1 GATGAATTCCTCCCAAGCAAGCTTCTTCGACTTCCCTCTAACACCAATCGTCTGGTCTCG 60
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GATGAATTCCTCCCCAGCAAGCTTCTTCGATTTCCCTCTAACACCAATCGTCTGGTCTCG 60
Query 61 TTTCTAATTGGAGAGAACTTTGAAGCTAATGGGGAAGATAATGGAATGGGCAGCAAGATC 120
|||||||| |||| |||||||||||| |||||||| | ||||||| ||||||||||||||
Sbjct 61 TTTCTAATCGGAGGGAACTTTGAAGCAAATGGGGAGGGTAATGGATTGGGCAGCAAGATC 120
Query 121 TGATCATTTGGGAGGAATTCCAAGGAATACTGTGATAATGGCTGTTAGTGCATTTGCAAA 180
|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 121 TGATCATTTGGGAGGACTTCCAAGGAAAACTATGATAATGGCTGTTAGTGCATTTGCAAA 180
Query 181 AGCAGTAGCAAATCTTTGCAATAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCT 240
||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCGGTAGCGAATCTTTGTAACAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCT 240
Query 241 TGTCCAGTCAAGACCACCTGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCGACTTT 300
||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 TGTCCGGTCAAGACCACCGGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCAACTTT 300
Query 301 GGATGATCCAGTAATGTGGGGGGCATTTAAGGGTCTCCTTTCCTTAGATCCAGAATTGGC 360
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGATGATCCAGTTATGTGGGGGGCATTCAAGGGTCTCCTTTCCTTAGATCCAGAATTGGC 360
Query 361 TCGGTGGGTTCTTGCTGCAGAGGATATATGTTTCAGGAACCCTATATTCTCCTACATTTT 420
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 361 TCGGTGGGTTCTTGCTGCGGAGGACATATGTTTCAGGAACCCTATCTTCTCCTACATTTT 420
Query 421 CCGCACTGGAAAATGTATACCTATAACTAGAGGTGGTGGAATCTACCAAGAAAACATGAA 480
||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 421 CCGCACTGGAAAATGCATACCTATAACCAGAGGTGGTGGAATCTATCAAGAACACATGAA 480
Query 481 TGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGCTGCATACCTTCCCAGAGGGAAAGGT 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 TGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGCTGCATACCTTTCCAGAGGGAAAGGT 540
Query 541 GTTTCAAGATGATGTTCCTATAAGACGACTTAAATGGGGAACTGCAAGCCTCATCGCCCG 600
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 GTTTCAAGAAGATGTTCCTATAAGACGACTAAAATGGGGAACTGCAAGCCTCATCGCCCG 600
Query 601 TT-CCCCAGTTACCCCAATCGTTTTGCCAATAATTCACCGTGGTTTTGAGGAGATGATGC 659
|| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 601 TTGCCCC-GTTACCCCAATCGTCTTGCCAATAATTCACCGTGGTTTTGAGGAGATGTTGC 659
Query 660 CGGAGAACTACAATAATGGACGAAGACCACTGGTACCG-T-TGCCGAACAAACACCTTAA 717
||||||||||||| ||||||||||||||||||||||| | ||| |||||| |||| ||
Sbjct 660 CGGAGAACTACAACAATGGACGAAGACCACTGGTACCACTGTGC--AACAAAGACCTGAA 717
Query 718 AGTTGTGGTTGGTGAACCAATTGAGTTTGATGTTCCAATGATGGTTGAGACTGCTGTCTT 777
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 718 AGTTGTGGTTGGTGAACCAATTGAGTTTGATGTTCCCATGATGGTTGAGACGGCTGTCTT 777
Query 778 GGACTCCCGCCATGTAACCCCTCCTCTTCAAGAAGTGAAATGGCCTGTCCTCACTTCTGC 837
|| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 GGCCTCTCGCCATGTAACCCCTCCTCTTCAAGAAGCGAAATGGCCTGTCCTCACTTCTGC 837
Query 838 TGGCCAAGTGCTAGACGAAACTGCTCAGAGACA-CCTCTACATAGCTCTGTCCGAGAAGA 896
|||||||| |||||||||||||||||||||| | ||| ||||||||||| |||||||| |
Sbjct 838 TGGCCAAGAGCTAGACGAAACTGCTCAGAGA-AGCCTGTACATAGCTCTTTCCGAGAAAA 896
Query 897 TTCAATCCTCCTTGGAAACATTGAGACTCTTAGCCAAGCGGTTGTGACTTCCGCCGGGAA 956
| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 897 TCCAATCCTCCTTGGAAACATTGAGACTCTTAGCCAAGCGATTGTGACCTCCGCCGGGAA 956
Query 957 ACTTCATATCAAAATCCGGTTCACAACTTTTAAAGTTCCGGTTTAGATTCGCCATGGTAA 1016
|||||| |||| ||||||||||| || |||| ||||||||||| |||| ||| |||||||
Sbjct 957 ACTTCAAATCAGAATCCGGTTCATAATTTTTTAAGTTCCGGTTAAGATCCGCAATGGTAA 1016
Query 1017 TCAAATATTATCTTTATTCAATTTCCTGAAGCTGAGAAAAAATTATATAACTATGAAAAT 1076
|||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||| |||
Sbjct 1017 TCAAATATTATCTTTATTTAATTTTCTGAAGCTGATAAAAAATTATATAAGTATGATAAT 1076
Query 1077 TTAATAACTCGCATTTTAAATTATTTTATCGACTAGGATATATAGCAACCCGCAATAATG 1136
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TAAATAACTCGCATTTTAATTTATTTTATCGACTAGGATATATAGCAACCCGCAATAATG 1136
Query 1137 TATGTT 1142
|||||
Sbjct 1137 AATGTT 1142
> Ahg497362 jgi|Araly1|497362|fgenesh2_kg.262__3__AT1G78690.1
Length=1098
Score = 1247 bits (675), Expect = 0.0
Identities = 767/811 (95%), Gaps = 7/811 (1%)
Strand=Plus/Plus
Query 2 ATGAATTCCTCCCAAGCAAGCTTCTTCGACTTCCCTCTAACACCAATCGTCTGGTCTCGT 61
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTCCTCCCAAGCAAGCTTCTTCGATTTCCCTCTAACACCAATCGTCTGGTCTCGT 60
Query 62 TTCTAATTGGAGAGAACTTTGAAGCTAATGGGGAAGATAATGGAATGGGCAGCAAGATCT 121
||||||| |||| |||||||||||| |||||||| | ||||||| |||||||||||||||
Sbjct 61 TTCTAATCGGAGGGAACTTTGAAGCAAATGGGGAGGGTAATGGATTGGGCAGCAAGATCT 120
Query 122 GATCATTTGGGAGGAATTCCAAGGAATACTGTGATAATGGCTGTTAGTGCATTTGCAAAA 181
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GATCATTTGGGAGGAGTTCCAAGGAAAACTGTGATAATGGCTGTTAGTGCATTTGCAAAA 180
Query 182 GCAGTAGCAAATCTTTGCAATAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCTT 241
|| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGGTAGCGAATCTTTGTAACAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCTT 240
Query 242 GTCCAGTCAAGACCACCTGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCGACTTTG 301
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTCCGGTCAAGACCACCGGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCGACTTTG 300
Query 302 GATGATCCAGTAATGTGGGGGGCATTTAAGGGTCTCCTTTCCTTAGATCCAGAATTGGCT 361
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GATGATCCAGTTATGTGGGGGGCATTCAAGGGTCTCCTTTCCTTAGATCCAGAATTGGCT 360
Query 362 CGGTGGGTTCTTGCTGCAGAGGATATATGTTTCAGGAACCCTATATTCTCCTACATTTTC 421
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 361 CGGTGGGTTCTTGCTGCGGAGGACATATGTTTCAGGAACCCTATCTTCTCCTACATTTTC 420
Query 422 CGCACTGGAAAATGTATACCTATAACTAGAGGTGGTGGAATCTACCAAGAAAACATGAAT 481
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 421 CGCACTGGAAAATGCATACCTATAACCAGAGGTGGTGGAATCTACCAAGAACACATGAAT 480
Query 482 GAAGCTCTCCAGCGATTAAAAGATGGATCTTGGCTGCATACCTTCCCAGAGGGAAAGGTG 541
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GAAGCTCTCCAGCGATTCAAAGATGGATCTTGGCTGCATACCTTTCCAGAGGGAAAGGTG 540
Query 542 TTTCAAGATGATGTTCCTATAAGACGACTTAAATGGGGAACTGCAAGCCTCATCGCCCGT 601
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 TTTCAAGAAGATGTTCCTATAAGACGACTAAAATGGGGAACTGCAAGCCTCATCGCCCGT 600
Query 602 TCCCCAGTTACCCCAATCGTTTTGCCAATAATTCACCGTGGTTTTGAGGAGATGATGCCG 661
| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 601 TGCCCAGTTACCCCAATCGTCTTGCCAATAATTCACCGTGGTTTTGAGGAGATGTTGCCG 660
Query 662 GAGAACTACAATAATGGACGAAGACCACTGGTACCG-T-TGCCGAACAAACACCTTAAAG 719
||||||||||| ||||||||||||||||||||||| | ||| || ||| |||||||||
Sbjct 661 GAGAACTACAACAATGGACGAAGACCACTGGTACCACTGTGC--AATAAAGACCTTAAAG 718
Query 720 TTGTGGTTGGTGAACCAATTGAGTTTGATGTTCCAATGATGGTTGAGACTGCTGTCTTGG 779
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 TTGTGGTTGGTGAACCACCTGAGTTTGATGTTCCCATGATGGTTGAGACTGCTGTCTTG- 777
Query 780 ACTCCCGCCATGTAACCCCTCCTCTTCAAGA 810
||||||||||||||||| ||||||||||||
Sbjct 778 -CTCCCGCCATGTAACCC-TCCTCTTCAAGA 806
Score = 372 bits (201), Expect = 4e-102
Identities = 250/274 (91%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 871 CCTCTACATAGCTCTGTCCGAGAAGATTCAATCCTCCTTGGAAACATTGAGACTCTTAGC 930
||||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 825 CCTCTTCATAGCTCTTTCCGAGAAAATCCAATCCTCCTTGGAAACATTGAGACTCTTAGC 884
Query 931 CAAGCGGTTGTGACTTCCGCCGGGAAACTTCATATCAAAATCCGGTTCACAACTTTTAAA 990
||||||||||| ||||||||||| |||||||| |||| ||||||||||| || |||| ||
Sbjct 885 CAAGCGGTTGTAACTTCCGCCGGCAAACTTCAAATCAGAATCCGGTTCATAATTTTTTAA 944
Query 991 GTTCCGGTTTAGATTCGCCATGGTAATCAAATATTATC--TTTATTCAATTTCCTGAAGC 1048
||||||||| |||| ||| ||||||||||||||||||| ||| || ||||| |||||||
Sbjct 945 GTTCCGGTTAAGATCCGCAATGGTAATCAAATATTATCTTTTTTTTTAATTTTCTGAAGC 1004
Query 1049 TGAGAAAAAATTATATAACTATGAAAATTTAATAACTCGCATTTTAAATTATTTTATCGA 1108
||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1005 TGATAAAAAATTATATAAGTATGATAATTAAATAACTCGCATTTTAAATTATTTTATCGA 1064
Query 1109 CTAGGATATATAGCAACCCGCAATAATGTATGTT 1142
|||||||||||||||||||||||||||| |||||
Sbjct 1065 CTAGGATATATAGCAACCCGCAATAATGAATGTT 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43383879546
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5