BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78700.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927285 jgi|Araly1|927285|scaffold_202846.1 1644 0.0
> Ahg927285 jgi|Araly1|927285|scaffold_202846.1
Length=1018
Score = 1644 bits (890), Expect = 0.0
Identities = 976/1018 (96%), Gaps = 4/1018 (0%)
Strand=Plus/Plus
Query 487 gaagaaacagagagTAGTGATGACATCAGGGACGAGAATGCCGACATGGAGGGAAAGAGA 546
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 5 GAAGAAACAGAGAGTAGTGATGACGTCGGGGACGAGAATGCCGACATGGAGGGAGAGAGA 64
Query 547 GAACAACAAGAGAAGAGAAAGACGACGGAGAGCAATCGCAGCTAAGATCTTCACCGGATT 606
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 65 GAACAACAAGAGAAGAGAGAGACGACGGAGAGCAATCGCAGCAAAGATCTTCACCGGATT 124
Query 607 AAGAATGTACGGTAATTACGAGCTTCCGAAGCATTGCGACAACAACGAAGTGCTTAAAGC 666
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AAGAATGTACGGTAACTACGAGCTTCCGAAGCATTGCGACAACAACGAAGTGCTTAAAGC 184
Query 667 ACTCTGTAACGAAGCTGGTTGGATCGTCGAACCTGATGGAACTACTTACCGCAAGGGATG 726
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ACTCTGCAACGAAGCTGGTTGGATCGTCGAACCTGATGGAACTACTTACCGCAAGGGATG 244
Query 727 TAGTAGACCTGTAGAGCGTATGGAGATAGGTGGTGGTTCAGCAACCGCTAGTCCTTGCTC 786
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 245 TAGTAGACCTGTAGAGCGTATGGAGATAGGTGGCGGTTCAGCAACCGCTAGTCCTTGCTC 304
Query 787 TTCCTATCAGCCAAGTCCCTGTGCTTCTTATAATCCTAGTCCAGGCTCCTCCAACTTCAT 846
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 305 CTCCTATCAGCCAAGTCCGTGTGCTTCTTATAATCCTAGCCCAGGCTCCTCCAACTTCAT 364
Query 847 GAGTCCTGCTTCATCCTCATTTGCTAATCTTACCTCTGGTGATGGCCAATCTCTCATCCC 906
||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 365 GAGTCCTGCTTCATCCTCATTTGCTAATCTTACCTCTGGAGACGGCCAATCACTAATCCC 424
Query 907 ATGGCTAAAACACCTCTCAACAACATCATCCTCATCAGCTTCTTCATCATCAAGACTCCC 966
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 425 GTGGTTGAAACACCTCTCAACAACATCATCCTCATCAGCTTCTTCGTCATCAAGACTCCC 484
Query 967 TAATTACCTCTATATCCCTGGAGGCTCCATAAGCGCTCCTGTAACTCCTCCTTTAAGCTC 1026
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 485 TAATTACCTCTACATCCCTGGAGGCTCCATAAGCGCTCCTGTAACCCCTCCTTTAAGCTC 544
Query 1027 TCCAACAGCTCGTACCCCGAGAATGAACACTGATTGGCAGCAACTCAACAACTCCTTCTT 1086
||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct 545 TCCAACAGCTCGTACCCCGAGGATGAACGCTGATTGGCAACAACTCAACAACTCCTTCTT 604
Query 1087 TGTCTCCTCAACACCGCCAAGTCCCACGCGTCAGATCATCCCTGACTCTGAATGGTTCTC 1146
|||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 605 TGTCTCCTCAACACCGCCAAGTCCCACGCGACA-A--ATCCCTGACTCTGAATGGTTCTC 661
Query 1147 AGGGATTCAACTAGCACAAAGTGTTCCAGCTTCACCAACGTTTAGCCTCGTCTCACAAAA 1206
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 662 AGGGATTCAACTAGCACAAAGTGTTCCAGCTTCACCAACGTTTAGCCTTGTTTCACAAAA 721
Query 1207 CCCATTTGGATTCAAAGAAGAAGCAGCCTCTGCTGCTGGAGGCGGAGGAGGGTCAAGGAT 1266
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 722 CCCATTCGGATTCAAAGAAGAAGCAGCCTCTGCTGCTGGAGGCGGAGGCGGATCAAGGAT 781
Query 1267 GTGGACACCAGGTCAAAGCGGAACCTGCTCCCCTGCTATTCCTCCTGGTGCTGACCAGAC 1326
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 782 GTGGACACCGGGTCAAAGCGGAACTTGCTCCCCTGCTATTCCTCCTGGTGCTGACCAGAC 841
Query 1327 AGCAGATGTTCCAATGTCTGAAGCCGTGGCTCCTCCAGAGTTTGCTTTTGGGAGTAATAC 1386
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 842 AGCAGATGTGCCAATGTCTGAAGCCGTGGCTCCTCCAGAGTTTGCTTTCGGGAGTAACAC 901
Query 1387 AAACGGGCTAGTGAAAGCATGGGAAGGAGAGAGGATACACGAGGAGAGTGGTTCAGATGA 1446
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AAACGGGTTAGTGAAAGCATGGGAAGGAGAGAGGATACACGAGGAGAGTGGTTCAGATGA 961
Query 1447 TCTTGAACTCACTCTTGGAAACTCAAGCACCAGGTAATTCCAAAGCCACATGTACATT 1504
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 962 TCTTGAACTCACTCTTGGAAATTCAAGCACCAGGTAATTCCAAC-CCACATGTACATT 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5