BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78700.1 Length=1626 Score E Sequences producing significant alignments: (Bits) Value Ahg927285 jgi|Araly1|927285|scaffold_202846.1 1644 0.0 > Ahg927285 jgi|Araly1|927285|scaffold_202846.1 Length=1018 Score = 1644 bits (890), Expect = 0.0 Identities = 976/1018 (96%), Gaps = 4/1018 (0%) Strand=Plus/Plus Query 487 gaagaaacagagagTAGTGATGACATCAGGGACGAGAATGCCGACATGGAGGGAAAGAGA 546 |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| Sbjct 5 GAAGAAACAGAGAGTAGTGATGACGTCGGGGACGAGAATGCCGACATGGAGGGAGAGAGA 64 Query 547 GAACAACAAGAGAAGAGAAAGACGACGGAGAGCAATCGCAGCTAAGATCTTCACCGGATT 606 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 65 GAACAACAAGAGAAGAGAGAGACGACGGAGAGCAATCGCAGCAAAGATCTTCACCGGATT 124 Query 607 AAGAATGTACGGTAATTACGAGCTTCCGAAGCATTGCGACAACAACGAAGTGCTTAAAGC 666 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 AAGAATGTACGGTAACTACGAGCTTCCGAAGCATTGCGACAACAACGAAGTGCTTAAAGC 184 Query 667 ACTCTGTAACGAAGCTGGTTGGATCGTCGAACCTGATGGAACTACTTACCGCAAGGGATG 726 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 ACTCTGCAACGAAGCTGGTTGGATCGTCGAACCTGATGGAACTACTTACCGCAAGGGATG 244 Query 727 TAGTAGACCTGTAGAGCGTATGGAGATAGGTGGTGGTTCAGCAACCGCTAGTCCTTGCTC 786 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 245 TAGTAGACCTGTAGAGCGTATGGAGATAGGTGGCGGTTCAGCAACCGCTAGTCCTTGCTC 304 Query 787 TTCCTATCAGCCAAGTCCCTGTGCTTCTTATAATCCTAGTCCAGGCTCCTCCAACTTCAT 846 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 305 CTCCTATCAGCCAAGTCCGTGTGCTTCTTATAATCCTAGCCCAGGCTCCTCCAACTTCAT 364 Query 847 GAGTCCTGCTTCATCCTCATTTGCTAATCTTACCTCTGGTGATGGCCAATCTCTCATCCC 906 ||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||| Sbjct 365 GAGTCCTGCTTCATCCTCATTTGCTAATCTTACCTCTGGAGACGGCCAATCACTAATCCC 424 Query 907 ATGGCTAAAACACCTCTCAACAACATCATCCTCATCAGCTTCTTCATCATCAAGACTCCC 966 ||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 425 GTGGTTGAAACACCTCTCAACAACATCATCCTCATCAGCTTCTTCGTCATCAAGACTCCC 484 Query 967 TAATTACCTCTATATCCCTGGAGGCTCCATAAGCGCTCCTGTAACTCCTCCTTTAAGCTC 1026 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 485 TAATTACCTCTACATCCCTGGAGGCTCCATAAGCGCTCCTGTAACCCCTCCTTTAAGCTC 544 Query 1027 TCCAACAGCTCGTACCCCGAGAATGAACACTGATTGGCAGCAACTCAACAACTCCTTCTT 1086 ||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| Sbjct 545 TCCAACAGCTCGTACCCCGAGGATGAACGCTGATTGGCAACAACTCAACAACTCCTTCTT 604 Query 1087 TGTCTCCTCAACACCGCCAAGTCCCACGCGTCAGATCATCCCTGACTCTGAATGGTTCTC 1146 |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct 605 TGTCTCCTCAACACCGCCAAGTCCCACGCGACA-A--ATCCCTGACTCTGAATGGTTCTC 661 Query 1147 AGGGATTCAACTAGCACAAAGTGTTCCAGCTTCACCAACGTTTAGCCTCGTCTCACAAAA 1206 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 662 AGGGATTCAACTAGCACAAAGTGTTCCAGCTTCACCAACGTTTAGCCTTGTTTCACAAAA 721 Query 1207 CCCATTTGGATTCAAAGAAGAAGCAGCCTCTGCTGCTGGAGGCGGAGGAGGGTCAAGGAT 1266 |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 722 CCCATTCGGATTCAAAGAAGAAGCAGCCTCTGCTGCTGGAGGCGGAGGCGGATCAAGGAT 781 Query 1267 GTGGACACCAGGTCAAAGCGGAACCTGCTCCCCTGCTATTCCTCCTGGTGCTGACCAGAC 1326 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 782 GTGGACACCGGGTCAAAGCGGAACTTGCTCCCCTGCTATTCCTCCTGGTGCTGACCAGAC 841 Query 1327 AGCAGATGTTCCAATGTCTGAAGCCGTGGCTCCTCCAGAGTTTGCTTTTGGGAGTAATAC 1386 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 842 AGCAGATGTGCCAATGTCTGAAGCCGTGGCTCCTCCAGAGTTTGCTTTCGGGAGTAACAC 901 Query 1387 AAACGGGCTAGTGAAAGCATGGGAAGGAGAGAGGATACACGAGGAGAGTGGTTCAGATGA 1446 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 AAACGGGTTAGTGAAAGCATGGGAAGGAGAGAGGATACACGAGGAGAGTGGTTCAGATGA 961 Query 1447 TCTTGAACTCACTCTTGGAAACTCAAGCACCAGGTAATTCCAAAGCCACATGTACATT 1504 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 962 TCTTGAACTCACTCTTGGAAATTCAAGCACCAGGTAATTCCAAC-CCACATGTACATT 1018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60944392000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5