BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78710.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316771 jgi|Araly1|316771|fgenesh1_pm.C_scaffold_2001804 1624 0.0
> Ahg316771 jgi|Araly1|316771|fgenesh1_pm.C_scaffold_2001804
Length=1080
Score = 1624 bits (879), Expect = 0.0
Identities = 1014/1081 (94%), Gaps = 2/1081 (0%)
Strand=Plus/Plus
Query 1 ATGAATTTCCATCAGGTCCTCTTTCTCCTTCTTCTTATTTTTCTTGTTGATTTATCAGAT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTTCCATCAGGTCCTCTTTCTCATTCTTCTTATTTTTCTTGTTGATTTATCAGAT 60
Query 61 TATGGTGTCTTAGCAGATAAGACCAATGATGGTTACAAGAACGCAACAAAGTGTAACATT 120
|| ||||||||||||||| ||| ||| ||||||||||||| | ||||||||||||||
Sbjct 61 TACAATGTCTTAGCAGATAACACCGATGCTGGTTACAAGAACACGTCAAAGTGTAACATT 120
Query 121 TACCAAGGACGTTGGATTTATGACAATTCTTCTAATCCTCTTTATGGAACATCAACTTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TACCAAGGACGTTGGATTTATGACAATTCTTCTAATCCTCTTTATGGAACATCGACTTGC 180
Query 181 CCGTTCATTGGATTGGATTGCCAGAAGTTTGGTCGGCCGGACAAGAACTACCTTCATTAC 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CCATTCATCGGATTGGATTGCCAGAAGTTTGGTCGGCCGGACAAGAACTACCTCCATTAC 240
Query 241 CGATGGCAACCCACCGGATGTGACATCCCAAGATTCAACGGACGAGATTTCTT-AACAAG 299
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| || ||
Sbjct 241 CGATGGCAACCCACCGGATGCGACATCCCAAGATTCGACGGACGAGATTTCTTGAA-GAG 299
Query 300 ATTCAAAGGGaaaaaaaTACTGTTTGTGGGAGATTCACTAAGCAACAATATGTGGGTGTC 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 ATTCAAAGGGAAAAAAATACTGTTTGTGGGAGATTCACTAAGCAATAATATGTGGGTGTC 359
Query 360 ACTAAGTTGCATGCTTCACGCGGCCGTTCCTAACGCTAAGTATACCTTCCAACTCAACAA 419
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 360 TCTAAGTTGCATGCTTCACGCTGCCGTTCCTAACGCTAAGTACACCTTCCAACTCAACAA 419
Query 420 GGGCCTCTCAACTTTCACCATTCCAGAATATGGAATATCTGTAAATTTCCTGAAAAATGG 479
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 420 ACGCCTCTCTACTTTCACCATTCCGGAATATGGAATATCAGTAAATTTCCTGAAAAATGG 479
Query 480 GTTCCTGGTGGATTTGGTATCGGACAAAACAAGAGGATTGATTCTGAAATTAGATTCGAT 539
||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 480 GTTCCTGGTGGATTTAGTAGCGGACAAAACAAGAGGGTTGATTCTGAAACTAGATTCGAT 539
Query 540 CAGTAGGGGAAATCAATGGTTGGGATCTGATGTCGCCATCTTTAACACATTCCACTGGTG 599
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 540 CAGTTCCGGAAATCAATGGTTGGGATCAGATGTTGCCATCTTTAACACATTCCACTGGTG 599
Query 600 GTCTCACACTGGCCGTGCCAAAACATGGGATTATTTTCAAACGGGAGATAAAATAGTGAA 659
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 GTCTCACACCGGTCGTGCCAAAACATGGGATTATTTTCAAACGGGAGACCAAATAGTGAA 659
Query 660 AGAGATGAATAGAATGGAGGCTTTCAAGATTGCTTTGACAACTTGGTCTAAATGGATTGA 719
|||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 660 AGAGATGAATAGAATGGAAGCTTTCAAGATTGCTTTAACAACTTGGGCTAAGTGGATTGA 719
Query 720 TCACAATATCGATCCTTCAAAAACTAGGGTTTTCTATCAAGGCGTCTCTCCCGTTCACTT 779
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TCACAACATTGATCCTTCAAAAACTAGGGTTTTCTATCAAGGCGTTTCTCCCGTTCACTT 779
Query 780 AAATGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGTGAGACGGTACCAGTGCA 839
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 780 AATTGGTGGTGAATGGGGTAAACCGGGGAAGACTTGCTTGGGCGAGACGGAACCAGTGAA 839
Query 840 AGGACCAAGTTACCCCGGACGACCTAATGAAGGTGAAGCTATAGTGAAAAGTGTGATCGG 899
||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 840 AGGACCAAGTTACTGCGGACAACCTAATGAAGGTGAAGCTATAGTGAGAAGTGTGATCGG 899
Query 900 AAGGATGGCTAAACCAGTGGAGCTCCTTGATGTGACGGCTATGACGGAGATGAGGAAGGA 959
| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 AGGGATGGCTAAACCGGTGGAGCTCCTTGATGTGACGAATATGACGGAGATGAGGAAGGA 959
Query 960 CGGTCACCCTTCCATCTATGCCGGTGGAGGCGATCGCTTAAACGACTGCAGCCATTGGTG 1019
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 CGGTCACCCTTCGATCTATGCCGGTGGAGGAAATCGCTTAAACGACTGCAGCCATTGGTG 1019
Query 1020 CCTCCCTGGAGTCCCAGACGCTTGGAACCAGCTCCTTTATACAGCTCTTCTCAGCCACTA 1079
|||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct 1020 CCTCCCTGGAGTCCCAGACGCTTGGAACCAGCTCCTTTATACGGCTCTTGTCCGCCACTA 1079
Query 1080 G 1080
|
Sbjct 1080 G 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5