BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78730.1
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477036 jgi|Araly1|477036|fgenesh2_kg.2__2166__AT1G78730.1 1447 0.0
> Ahg477036 jgi|Araly1|477036|fgenesh2_kg.2__2166__AT1G78730.1
Length=1235
Score = 1447 bits (783), Expect = 0.0
Identities = 963/1048 (92%), Gaps = 20/1048 (2%)
Strand=Plus/Plus
Query 10 GACGCAGAGAGTCGTGTGAGTTCCACACGCTCGTATGATAGGA-GAGGTCATCTAGATTG 68
||||||||||| |||||| || ||| ||||||| ||||||||| | |||||||||||| |
Sbjct 22 GACGCAGAGAGCCGTGTGCGTGCCAAACGCTCGGATGATAGGATG-GGTCATCTAGATAG 80
Query 69 GCTGAGAAAATTACCAGATTCATTGCTATGTCAGGTTTTCTTGAATCTTCCCACAAAAGA 128
|||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 81 GCTGAGCAAATTACCAGATCCATTGCTATGTCAGGTACTCTTGAATCTTCCCACAAAAGA 140
Query 129 TGTGGTTAAGACTAGTGTGTTATCAAGTACATGGGGAAATATATGGAGAAGTGTACCTGG 188
|||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||
Sbjct 141 TGTGGTTAAGACTAGTGTGTTATCCAGTAGATGGGAAAATATCTGGAGAAGTGTACCTGG 200
Query 189 TTTGGACTTGGGGTATGGTGACTTCCCGGAGTACAACGCTTTTGTGAGCTTTGTCGATAG 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 201 TTTGGACTTGGGGTATGGTGACTTCCCGGAGTACAACGCTTTTGTGAGCTTTGTTGATAG 260
Query 249 CTTTCTGGGTTTTAACAGCGAATCTCGCCTGCAAAATTTCAAGTTAAACTACCAATATTT 308
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 261 CTTTCTGGGTTTTAACCGCGAATCTTGCCTGCAAAATTTCAAGTTAAACTACCAATATTT 320
Query 309 AAGGCTAAAGTATGAATGGAAGTGGACTGAGCTTGATAATGCTAATGTCACCCGGTGGAT 368
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AAGGCGAAAGTACAAATGGAAGTGGACTGAGCTTGATAATGCTAATGTCACCCGGTGGAT 380
Query 369 CAACACAGTTATTAAGCGGAAAGTTGAACATCTTCATCTCTCTGACGTGACCTTCAGTAA 428
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 381 CAACACAGTTATTAAGCGGAAAGTTGAACATCTTCATCTCTCTGACGTGATCTTCAATAA 440
Query 429 TCCCGAGTCTGTTTCTTTACCTTGTGTCAAAGTTATGTATCTAGATATGGTTAAGTTTGC 488
|||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 441 TCCCAAGTCCGTTTCTTTACCTTGTGTCAAAGTTATGCATCTAGATATTGTTAAGTTTGC 500
Query 489 CAACGATTTGGCTTTCGAAATGCTCATCTCTGGCTGCCCAGTTCTCGAAAGCTTAACTAT 548
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 501 CAACGATTGGGCTTTCGAAATGCTCATCTCAGGCTGCCCAGTTCTCGAAAGCTTAACTAT 560
Query 549 AAAGAGGAGTGCTTGTGACAATGTAGATTATTTACGTGTGTGCTCTCAGTCTCTATTGAG 608
| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 561 AGAGAGGAGTGCCTGTGATAATGTAGATTATTTACGGGTGTGCTCTCAGTCTCTATTGAG 620
Query 609 TTTCACCCTTGTTGGCCACTGTAACGAGGATATGGTTAAAGAGCAAGTAGTTGCAATAGA 668
|||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||
Sbjct 621 TTTCACCCTTCTTGGCCACTGTAACGAAGATATGAATAAAGAACAAGTAGTTGCAATAGA 680
Query 669 TGCTCCCAGGCTTGAGGATCTCAAGCTTTATTGTCATGAAACTGCAAGTTTCATAATAAA 728
||||| || ||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 TGCTCACAAGCTTGAGTATCTCAAGCTATATTGTCATGAAACTGCAAGTTTCATAATAAA 740
Query 729 GAATCCGGCTTCCCTTGTTAAGATGGACATCGACATTATGTTTAACTTGTCTTCCGAACA 788
|||||||||||||| |||||||||| ||||||||||| |||||||||||||| |||| |
Sbjct 741 TAATCCGGCTTCCCTCGTTAAGATGGCCATCGACATTAGGTTTAACTTGTCTTTCGAAAA 800
Query 789 GAAGTTTGA-CCCAAATGATCTACCAAAGAGAAATATGATCCGTAATTTTCTCCTCGGGA 847
|| |||||| ||||| |||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 801 GAGGTTTGATCCCAA-TGATCTACCAAAGAGAAATATGATTCGTAATTTTCTCATTGGGA 859
Query 848 TCTCTGGTGTCAAAGAAATGGAAATCTCTTCGCATACCCTCGAGGTCATCTATAATTACT 907
||||| ||||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||
Sbjct 860 TCTCTAATGTCAAAGAAATGGACATCTCTTCGTATACACTCGAGGCCATCTATAACTACT 919
Query 908 CAAGATGTGAACGATTACCCGTATTCCGTAACTTATCTTCCTTGCATGCTGACTTCGACG 967
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 920 CAAGATGTGAACGATTACCCTTATTCCGTAACCTATCTTCCTTGCATGCTGACTTCGACG 979
Query 968 ACTACAGGTGGGAAATGTTGCCAGGATTTAGTAAAACTCCAGGGGAGGAGCCAATTAGTA 1027
||| |||| | | | || || | | || ||||||||||||||||||||||||
Sbjct 980 ACTGCAGG-G--A--T-TT---AG--T--A--AAT-CTCCAGGGGAGGAGCCAATTAGTA 1023
Query 1028 TTTTACCTGGACCTCAGTGCAACCTACC 1055
||||||||| |||||| || ||||||||
Sbjct 1024 TTTTACCTGAACCTCATTGTAACCTACC 1051
Score = 283 bits (153), Expect = 2e-75
Identities = 169/176 (96%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 1101 AACAGAATTGAAACTAATGAGTTACTTTCTGGAGAAGTCAACAATCCTCAAGAAACTAAC 1160
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1062 AACAGAATTGGAACTAATGAGTTACTTTCTGGAGAACTCAACAATCCTCAAGAAACTAAC 1121
Query 1161 ACTACGCTTGGGTGA-TTTCAGAGGAAATGAAGAATCTGCCTTGCTCAAGAAACTCCTTA 1219
||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1122 ACTACGCTTGGGT-AGTTTCAGAGGAAATGAAGAATCTGCCTTCCTCAAGAAACTCCTTA 1180
Query 1220 CCATTCCAAGACTCTCTAGCTCATGCCAAGTTGT-AGTTCTCTGATCCTCATAGTC 1274
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1181 CCATTCCAAGACTCTCTAGCTCATGCCAAGTTGTCA-TTCTCTGATCCTCATAGTC 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5