BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78760.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477038 jgi|Araly1|477038|fgenesh2_kg.2__2168__AT1G78760.1 1991 0.0
Ahg476098 jgi|Araly1|476098|fgenesh2_kg.2__1228__AT1G69630.1 171 2e-41
> Ahg477038 jgi|Araly1|477038|fgenesh2_kg.2__2168__AT1G78760.1
Length=1354
Score = 1991 bits (1078), Expect = 0.0
Identities = 1264/1356 (93%), Gaps = 4/1356 (0%)
Strand=Plus/Plus
Query 1 ATGGATACAGGAGGAGATGAGAAACGTGCAAGAAGAAGCGAAGAGGATAGGCTGAGCAAC 60
||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATAGAGGAGGAGATGCGAAACGTGAAAGAAGAAGCGATGAGGATAGGCTGAGCAAC 60
Query 61 TTACCAGAATCCTTAATATGTCAGATAATGTTGAATATCCCCACGAAGGATGTGGTTAAG 120
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTACCAGAATCCTTACTATGTCAGATAATGTTGAATATCCCCACCAAGGATGTGGTTAAG 120
Query 121 AGTAGTGTCTTATCCAAAAGATGGAGAAATCTCTGGAGATATGTACCTGGTTTGAACGTG 180
||| |||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 121 AGTTGTGTGTTATCCAGAAGATGGAGAAACCTCTGGAGATATGTTCCTGGTTTGAACGTG 180
Query 181 GAGTACAATCAATTTCTAGACTATAATGCTTTCGTGAGTTTTGTTGATAGGTTTCTGGCT 240
||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 181 GAGTACAGTGAATTTCTAGACTATAACGCTTTCGTGAGTTTTGTTGATAGGTTCCTGGGT 240
Query 241 TTAGACAGAGAGTCTTGCTTCCAAAGTTTTAGGTTAAGGTACGATTGTGATGAAGAAGAG 300
|||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 241 GTAGAGAGAGAGTCTTGCTTCGAACGTTTTAGGTTAAGGTACGATTGTGATGAAGAAGAG 300
Query 301 CGCACTATTTCTAATGTCAAGCGGTGGATCAACATTGTCGTCGACCAAAAACTTAAAGTT 360
||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CGCACGATTTCTATTGTCAAGCGGTGGATCAACATTGTCGTCAACCAAAAACTTAAAGTT 360
Query 361 CTCGACGTTTTGGACTACACTTGGGGGAATGAGGAAGTCCAGATACCTCCATCCGTTTAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCGACGTTTTGGACTACACTTGGGGGAATGAGGAAGTCCAGATACCTCCATCCGTTTAC 420
Query 421 ACATGCGAGAGCTTGGTGTCTTTAAAGCTCTGTAATGTGATCTTGCCTAATCCTAAGGTT 480
||||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||
Sbjct 421 ACATGCGAGAGCTTGGTGTCTATGAAGCTCTGTAATGTGATCTTGCCTAATCCTCAGTTT 480
Query 481 ATATCTTTGCCTTTGGTCAAAGTTATTGAGCTTGATATAGTTAAGTTTTCCAATGCTTTG 540
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 481 ATATCTTTGCCTTTGGTCAAAGCTATTGAGCTTGATATAGTTAAGTTTGCCAATGCTTTG 540
Query 541 GTTTTGGAAAAGATCATCTCAAGCTGTTCAGCTCTTGAAAGCTTGATTATAAGCAGGAGT 600
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTTGGAAAAGCTCATCTCAAGCTGTTCAGCTCTTGAAAGCTTGATTATAAGCAGGAGT 600
Query 601 TCCGTTGATGATATAAATGTTTTACGTGTTAGTTCTCGGTCTCTACTGAGCTTCAAACAT 660
||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 TCCGTTGATGATATAGATGTTTTACGTGTCCGTTCTCGGTCTCTACTGAGATTCAAACAT 660
Query 661 ATTGGCAACTGTTCTGACGGTTGGGATGAATTAGAAGTTGCAATTGATGCTCCTAAGCTT 720
||||| ||||||||||| |||||||||| || |||||||| ||||||||||||||||||
Sbjct 661 ATTGGTAACTGTTCTGATGGTTGGGATGGATGCGAAGTTGCTATTGATGCTCCTAAGCTT 720
Query 721 GAGTATCTGAACATCAGTGATCATTCAACTGCAAAATTCAAAATGAAGAATTCGGGTTCT 780
||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||
Sbjct 721 GAGTATCTGAACATCAGTGATCATTCAACCGCAAAGTTCAGAATAAAGAATTCGGGTTCT 780
Query 781 CTTGTGGAGGCGAAGATCAATATTATATTTAATATGGAAGAGCTACC-GCATCCAAATGA 839
||||| |||||||| |||||||| ||||||||||||||||||||||| | |||||||| |
Sbjct 781 CTTGTTGAGGCGAATATCAATATCATATTTAATATGGAAGAGCTACCAG-ATCCAAATAA 839
Query 840 TCGGCCAAAGAGAAAAATGATTCAAGATTTTCTCGCCGAGATCTCTAGTGTCAAAAAATT 899
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 840 TCGGCCAAAGAGAAAAATGATTCGAGATTTTCTCGCCGAGATCTCTACTGTCAAAACATT 899
Query 900 GTTCATCTCTTCGCATACTCTTGAGGTTATACAT-GATTTGGGGTGTGAACTACCCTTAT 958
||||||||||||||||||||||||||||||| | |||| | | ||||||||||| |||
Sbjct 900 GTTCATCTCTTCGCATACTCTTGAGGTTATAT-TCGATTCGAGTTGTGAACTACCAGTAT 958
Query 959 TTCGTAACCTATCCTCCTTGCACATAGACTTCGAAGACCACACCTTGAAAATGTTGTCCA 1018
||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 959 TTCATAACCTATCTTCCTTGCACATAGACTTCGAAGACCACAGCTTGAAAATGTTGTCCA 1018
Query 1019 CCTTTCTCCAGAGCTGCCCAAATGTTAAATCTCTTGTCGTGGAATTTAAGGATTCCTCAA 1078
| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1019 CGTTTCTCCAGAGCTGCCCAAATCTAAAATCTCTTGTCGTGGAATTTAAGGATTCCTCAG 1078
Query 1079 AAGAGGACGGAGATAGAGTTTTATCCATACCTCGGTGTTTCTTCACAACTCTCGAGTATG 1138
|||||||||||| | |||||||||||||||||| ||||||||| ||||| ||||||||||
Sbjct 1079 AAGAGGACGGAGTTGGAGTTTTATCCATACCTCTGTGTTTCTTAACAACACTCGAGTATG 1138
Query 1139 TTAAGATAGAGAGGCCAATCACAGGAGAGGCAAGGGGAATGAAAGTAGTTAGTTACATTT 1198
|||||||||| |||||||||||||| ||||| ||||| |||||| |||||||||||||||
Sbjct 1139 TTAAGATAGAAAGGCCAATCACAGGGGAGGCGAGGGGGATGAAACTAGTTAGTTACATTT 1198
Query 1199 TGGAGAATTCACCAATCCTCAAGAAACTGAATCTGTGCTTGAATAGTTCCAGAGAGAAAT 1258
|||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1199 TGGAGAATTCACCAATCCTCAAGAAACTGACTCTAAGCTTGAAGAGTTCCAGAGAGAACG 1258
Query 1259 CAGAATCTGTCATTCTCAAAGAACTCCTTACAATTCCAAGACTCTCTACCTCATGCAAAG 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 AAGAATCTGTCATTCTCAAAGAACTCCTTACGGTTCCAAGACTCTCTACCTCATGCAAAG 1318
Query 1319 TTGTTGTTTTTGAACCTCGTAGTTGTTGGGTACTTG 1354
|||| |||| ||| ||||||||||||||| ||||||
Sbjct 1319 TTGTCGTTTCTGATCCTCGTAGTTGTTGGTTACTTG 1354
> Ahg476098 jgi|Araly1|476098|fgenesh2_kg.2__1228__AT1G69630.1
Length=1287
Score = 171 bits (92), Expect = 2e-41
Identities = 518/714 (73%), Gaps = 67/714 (9%)
Strand=Plus/Plus
Query 55 AGCAACTTACCAGAATCCTTAATATGTCAGATAATGTTGAATATCCCCACGAAGGATGTG 114
||||| |||||||| | || ||||| || || | |||||| | ||||| || |||||
Sbjct 61 AGCAAATTACCAGATTGTTTGCTATGTGAGGTACTCTTGAATCTTCCCACAAAAGATGTT 120
Query 115 GTTAAGAGTAGTGTCTTATCCAAAAGATGGAGAAATCTCTGGAGATATGTACCTGGTTTG 174
|||||||||||||| ||||||| ||||||||||||||||||| | | |||||||||||
Sbjct 121 GTTAAGAGTAGTGTTTTATCCACTAGATGGAGAAATCTCTGGAAACACGTACCTGGTTT- 179
Query 175 A-ACGTGGAGTACAA-TC-AATTT-CTAGACTAT-AATGCTTTCGTGAGTTTTGTTGATA 229
| || | || |||| || |||| | ||| | | || | ||| ||| |||||||||||
Sbjct 180 AGAC-T-TAG-ACAATTCTGATTTCCAAGAGT-TCAACACATTCTTGAATTTTGTTGATA 235
Query 230 GGTTTCTGGCTTT-AGACAGAGAGTCTTGCTTCCAA-AGTTTTAGGTT-AAGGTACGATT 286
| ||||| | ||| | ||| || || ||||| ||| | |||| ||| || ||| ||||
Sbjct 236 GCTTTCTTGATTTCA-ACACTGAATCATGCTTACAATA-CTTTATGTTGAA-GTATGATT 292
Query 287 GTGATGA--A-GA--A-GA-GC-GCACTATTTCTAATGTCAAG-CGGTGGATCAACATTG 337
||||||| | || | || | | | ||||||| | || | || |||||||||| |
Sbjct 293 GTGATGATGATGATTATGATCCTG-A-GATTTCTATTATC-GGACGTTGGATCAACACTA 349
Query 338 TCGTCGAC-CAAAAACTTAAAGTTCTCGACGTTTTGGACT-A--CACT-TGGGGGAATGA 392
| ||| || | || ||||| | |||| |||||||| | | || | |||| | ||
Sbjct 350 TTGTC-ACGCGCAATGTTAAACATATCGATGTTTTGGA-TGATTCA-TATGGGAG-TTG- 404
Query 393 GGAAGTCCAGATACCTCCATCCGTTTACACATGCGAGAGCTTGGTGTCTTTAAAGCTCTG 452
||| || ||| | ||| || | ||||||| || ||||| ||||| ||||||||||| ||
Sbjct 405 GGAGGTTCAGTTGCCTTCAAGCATTTACACTTGTGAGAGTTTGGTATCTTTAAAGCTTTG 464
Query 453 T-AATGTGATC-TTGCCTAATCCTAAGGTTATATCTTTGCCTT-TGGTCAAAGTTATTGA 509
| || | | | || |||| ||| ||| || | ||||| |||| | | ||||||| ||
Sbjct 465 TGCAT-T-AACTTTACCTAGTCCCAAGTTTGTTTCTTTACCTTCT-CTTAAAGTTA-TG- 519
Query 510 GCT-TG-ATATAGTTAAGTTTTCCAATGCTTTGGTTTTGGAAAAGATCATCT-C-AAGCT 565
||| || ||||| ||||||| | | | ||||| || |||| | | || | | || |
Sbjct 520 GCTCTGCTTATAGCTAAGTTTGCTGACGATTTGGCGTTAGAAACGCTGAT-TACGAA-AT 577
Query 566 GTTCAGCTCTTGAAAGCTTGATTA-TAAGCAGGAG-TTCCGTTGATGATA-TAAATGTTT 622
| | | |||||||||||||| || | || ||| | || | |||||| | | || ||||
Sbjct 578 GCCCGGTTCTTGAAAGCTTGACTATTGAG-AGGTGTTTTTG-TGATGAGATTGAA-GTTT 634
Query 623 TACGTGTTAGTTCTCGGTCTCTACTGAGCTTCAAACATATTGGC-AACT-GTTCTGACGG 680
||||||| | |||| |||| | ||||||| | ||| || || | | || ||| ||
Sbjct 635 TACGTGTGCGGTCTCAGTCTTTGTTGAGCTTTACTCATGTT-GCGGA-TAGTGATGA-GG 691
Query 681 TTG-GGATG-A-AT-TAGAAGTTGCAATTGATGCTCCTAAGCTTGAGTATCTGA 730
|| || || | || | | |||| |||||||||||||||||||||||||||||
Sbjct 692 GTGTGGTTGAAGATCTTGTGGTTGAAATTGATGCTCCTAAGCTTGAGTATCTGA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5