BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78770.1
Length=2308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477039 jgi|Araly1|477039|fgenesh2_kg.2__2169__AT1G78770.1 3157 0.0
> Ahg477039 jgi|Araly1|477039|fgenesh2_kg.2__2169__AT1G78770.1
Length=2237
Score = 3157 bits (1709), Expect = 0.0
Identities = 1918/2018 (95%), Gaps = 17/2018 (1%)
Strand=Plus/Plus
Query 293 TACATAATGGGCCT-AAGCCCATAT-GTATAGAAGGTGGGATAAAATAATTACACTCCCG 350
|||| ||||||||| |||||||||| ||| ||||| | || || ||| |||||||||
Sbjct 231 TACACAATGGGCCTAAAGCCCATATATTATGGAAGG-GAAAT-AAGGAATCACACTCCCG 288
Query 351 CCGAGGCTCTTCCCTTGTCCC---GCCTCTCTCGCTCAAACACTTTTGACTAGAGAAATC 407
||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |
Sbjct 289 CCGAGGCTCTTCCCTTGTCCCGAAGCCTCTCTCGCTCAAACACTTCCGACTGGAGAAAGC 348
Query 408 GGAAGAACAAAAATTTCCCGATAATCTTCCCCAACtttttttGTTACGATCTTTGCTTAG 467
||| |||| |||||||||| |||||||| | | |||||||||||||| |||||||
Sbjct 349 GGACGAAC-AAAATTTCCCAATAATCTT---C--C-GTTTTTGTTACGATCACTGCTTAG 401
Query 468 ATTTCGTCTGGAATAATTCGATAGGCGAGGAAATTATGAGGGAAGAAGAAATTGAGAAGA 527
||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 402 ATTTCGTCTGGGAGAATTCGAGAGGCGAGGCAATTATGAGGGAAGAAGAAATTGAGAAGA 461
Query 528 TCCGAGGCGTGGTTCGAGACTGCGTCAGTAAGCATTTGTACTCGTCGGCCATCTTCTTCG 587
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 462 TCCGAGGCGTGGTTCGAGACTGCGTCAGTAAGCATTTGTATTCGTCAGCCATCTTCTTCG 521
Query 588 CCGACAAAGTAGCAGCTCTTACCAATGACCCATCTGACATATATATGCAAGCTCAAGCTC 647
||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 522 CCGACAAGGTAGCGGCTCTTACCAATGATCCAGCTGACATATATATGCAAGCTCAAGCTC 581
Query 648 TTTTCCTCGGCCGCCATTACCGTCGCGCTTTTCACCTTCTTAACGCTTCTAAGATTGTCC 707
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 582 TATTCCTCGGCCGCCATTACCGTCGCGCCTTTCACCTTCTTAACGCTTCTAAGATTGTCC 641
Query 708 TCCGAGATCTTCGATTCCGTTACCTCGCCGCAAAGTGCCTCGAGGAATTGAAGGAATGGG 767
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 642 TCCGAGATCTTCGATTCCGTTACCTCGCCGCCAAGTGCCTCGAGGAATTGAAGGAGTGGG 701
Query 768 ATCAGTGTCTATTGATGCTTGGTGATGCGAAGGTTGATGATGATGGAATTGTGTATGATG 827
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 702 ATCAGTGTCTCTTGATGCTTGGTGATGCGAAGGTTGATGAAGATGGAATTGTGTATGATG 761
Query 828 CTAAAGACGGGAACGTGATAGATTTTGATAAAGATGGAGAGGACCGAGAGATTAATATAT 887
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 762 CTAAAGACGGGAACGTGATAGATTTTGATAAAGATGGAGAGGACCGAGAGATAAATATAT 821
Query 888 CATCGGCGATATGCTTTCTAAGAGGAAAAGCATACGGAGCCTTACAAAACCGGTCTCAGG 947
|||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 822 CATCAGCAATATGCTTTCTTAGAGGAAAAGCATACGGAGCCTTACAAAACCGTTCTCAGG 881
Query 948 CTCGACAATGGTACAAAGCTGCTATCAAGGCTGATCCTCTGTGCTATGAGGCTTTGGAAT 1007
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 882 CTCGACAATGGTACAAAGCTGCGATAAAGGCTGATCCTCTGTGCTATGAGGCTTTGGAAT 941
Query 1008 GCCTTATTGAGAGCCATATGCTTACATCTGAAGAAGAATCGAGTCTGCTTTCTTCACTAC 1067
|||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 942 GCCTGATTGAAAGTCATATGCTTACATCTGAAGAAGAATCGAGTCTGCTTTCGTCACTGC 1001
Query 1068 AATTTAGTCCAGAAGACGGATGGCTCTCTTCTTTCTATTCATGCTTGATTAAGAAGTATG 1127
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1002 AATTTAGTCCAGAAGACGGATGGCTCTCTTCTTTCTATTCATGCTTGATAAAGAAGTATG 1061
Query 1128 ACAAAGAGAGCACAGTAGAACTCAAGTTTAAGAAGCTTGAGAATGAGACTAGTGGTAGTG 1187
||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1062 ACAAAGAGAACACGGTAGAACTCAAGTTCAAGAAGCTTGAGAACGAGACTAGTGGTAGTG 1121
Query 1188 TCTCTGGCTCATCTATGATCACATTGGCTAATAACACTGATCTGTTGGCCTGTAAAGCTG 1247
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1122 TCTCTGGCTCATCTATGATCACGTTGGCTAATAACACTGATCTGTTGGCCTGTAAAGCTG 1181
Query 1248 AGTACTACCATCAATGCTGTGAATATCAGAAGTGTTTTGAACTAACCGCGGCACTCCTTG 1307
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1182 AGTACTACCATCAATGCTGTGAATATCAAAAGTGTTTCGAACTAACCGCTGCACTCCTTG 1241
Query 1308 AGAAAGATCCTTTTCATCTGAAGTGTACGC-TGGTACATTTGGCCGCTGCCATGGAACTT 1366
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1242 AGAAAGATCCTTTTCATCTGAAGTGTAC-CTTGGTACATTTGGCCGCTGCCATGGAACTT 1300
Query 1367 GGTAATTCAAATGAGCTCTATCTAATGGCGTGCAATTTGGTTAAAGACTACCCTTCGAAG 1426
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1301 GGTAATTCAAATGAGCTCTATCTGATGGCGTGCAATTTGGTAAAAGACTACCCTTCGAAG 1360
Query 1427 GCGTTGTCTTGGTTTGCGGTGGGTTGTTACTACTATTGTATCAAAAAGTATGCTGAAGCT 1486
||| |||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1361 GCGCTGTCATGGTTTGCTGTGGGCTGTTACTACTATTGTATTAAAAAGTATGCTGAAGCT 1420
Query 1487 CGGCGGTACTTTAGCAAAGCTACGGGTATTGATGGCTCATTCTCACCAGCTCGGATAGGT 1546
|||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1421 CGGCGGTACTTTAGCAAAGCTACGAGTATAGATGGCTCATTCTCACCAGCTTGGATAGGT 1480
Query 1547 TATGGTAATTCCTTTGCCGCCCAAGAGGAGGGTGACCAAGCCATGTCTGCCTATCGCACT 1606
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1481 TATGGTAATTCCTTTGCCGCCCAAGAAGAGGGTGACCAAGCCATGTCTGCCTATCGCACT 1540
Query 1607 GCCGCTAGACTATTTCCAGGGTGTCATTTGCCAACTCTGTACATTGGAATGGAGTATATG 1666
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 GCCGCTAGGCTATTTCCAGGGTGTCATTTGCCAACTCTGTACATTGGAATGGAGTATATG 1600
Query 1667 CGAACTCACAGCTACAAGCTTGCGGACCAGTTTTTCATGCAAGCAAAGGCGATATGCCCT 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 CGAACTCACAGCTACAAGCTTGCGGACCAGTTTTTCATGCAAGCAAAGGCGATATGCCCT 1660
Query 1727 TCGGATCCACTTGTTTATAATGAACTCGGAGTTGTTGCATATCATATGAAAGAGTATGGT 1786
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TCAGATCCACTTGTTTATAATGAACTCGGAGTTGTTGCATATCATATGAAAGAGTATGGT 1720
Query 1787 AAAGCTGTGCGGTGGTTTGAGAAGACATTGGCCCATATACCATCTGCATTAACTGAATCC 1846
|||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||
Sbjct 1721 AAAGCTGTGCGGTGGTTTGAGAAGACGTTGTCCCATATACCATCTGTATTAACTGAAACC 1780
Query 1847 TGGGAACCAACTGTGGTCAATCTTGCTCATGCATATAGAAAGCTAAGAAAGGACCGTGAA 1906
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1781 TGGGAACCAACTGTGGTCAATCTCGCTCATGCATATAGAAAGCTAAGAAAGGACCGTGAA 1840
Query 1907 GCTATCTCCTATTATGAAAGAGCACTTACACTATCAACTAAAAGCTTAAGCACTTATTCC 1966
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1841 GCTATCTCATATTATGAAAGAGCACTTACACTATCAACCAAAAGCTTAAGCACTTATTCC 1900
Query 1967 GGCTTGGCTTACACTTACCATTTGCAGGGGAATTTCTCAGCTGCCATCTCATATTATCAC 2026
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1901 GGCTTGGGTTACACTTACCATTTGCAGGGGAATTTCTCTGCTGCCATCTCATATTATCAC 1960
Query 2027 AAGGCCTTGTGGTTGAAACCTGATGATCAATTTTGTACGGAAATGTTGAACGTGGCTCTC 2086
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1961 AAGGCCTTGTGGTTGAAACCTGATGATCAATTCTGTACTGAGATGTTGAACGTGGCTCTC 2020
Query 2087 ATGGATGAATGTCAGAACGGGGTTGATTCAAAGGTTGAGCTCTGCTAGGAATTGGTCAGT 2146
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2021 ATGGATGAATGTCAGAACGGGGTTGATGCAAAGGTTGAGCTCTGCTAGAAATTGGTCAGT 2080
Query 2147 TAAAATTAACCGCCTTATTCTAGTTCTTGTTGTAATTTATCTGTACTATCATCATTGTGA 2206
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2081 TAAA-TTAACCGCCTTATTCTAGTTCTTGTTGTAATTTATCTGTACTATTATCATTGTGA 2139
Query 2207 CGCCTAACATAACTTATAATTTATTCCATGCATCAATAACCAAGAGACTGTTACAATATA 2266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2140 CGCCTAACATAACTTATAATTTATTCCATGCATCAATAACCAAGAGACTGTTACAATATA 2199
Query 2267 TTCTTTAAAGGGTCAAATACACTTCTACTTTTCTTATT 2304
|||||||||||||||||||||||||| |||||||||||
Sbjct 2200 TTCTTTAAAGGGTCAAATACACTTCTGCTTTTCTTATT 2237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86921939090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5