BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78780.2
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909505 jgi|Araly1|909505|Al_scaffold_0002_2586 1103 0.0
Ahg477039 jgi|Araly1|477039|fgenesh2_kg.2__2169__AT1G78770.1 187 1e-46
> Ahg909505 jgi|Araly1|909505|Al_scaffold_0002_2586
Length=831
Score = 1103 bits (597), Expect = 0.0
Identities = 641/663 (97%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 71 CAGGTTCAATGGAGGTATGATAACCCTCCAGACTTCAATAGTGTGAACCAGCTCTTTGAA 130
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 169 CAGGTTCAATGGAGGTATGGTCTCCCTCCAGACTTCAATAGTGTGAACCAGCTCTTTGAA 228
Query 131 GAAGGCCAGACTAAGGTGTGGCCAGAAGGTTCGTTAGAAGAGACAGTGCAAAACGCGATC 190
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 229 GAAGGCCAGACCAAGGTGTGGCCACAAGGTTCGTTAGAAGAGACTGTGCAAAACGCAATC 288
Query 191 AAGTCATGGGAGATGGAGTTCTCACATAAGATCCGTTTACAGGACTTCAAGACTATAAAC 250
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 289 AAGTCATGGGAGATGGAGTTCTCACATAAGATCCGTTTACAGGACTTCAAGACAATAAAC 348
Query 251 CCTGAGAAGTTTAAGCTCTTTGTCAATGGGAGAGAAGGTTTATCAGCTGAAGAGACGCTT 310
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CCTGAGAAATTTAAGCTCTTTGTCAATGGGAGAGAAGGTTTATCAGCTGAAGAGACGCTT 408
Query 311 AGGCTTGGGAGTTACAATGCTTTGCTCAAGAACTCTTTGCCTGAAGAGTTTCAGTACTAT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGGCTTGGGAGTTACAATGCTTTGCTCAAGAACTCTTTGCCTGAAGAGTTTCAGTACTAT 468
Query 371 AAGCCCGAGGAAGAGAGCTTTGAGTCATCACATGACGCCTTTAGATCTGCTTTACCACGC 430
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AAGCCAGAGAAAGAGAGCTTTGAGTCATCACATGACGCCTTTAGATCTGCTTTACCACGC 528
Query 431 GGGTTTGCGTGGGAAATACTCTCTGTGTACTCGGGGCCTCCTGTTATAGCCTTCAAATTT 490
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 529 GGGTTTGCGTGGGAAATACTCTCTGTGTACTCGGGACCGCCTGTTATAGCCTTCAAGTTT 588
Query 491 AGACACTGGGGATACTTTGAAGGAACTTTCAAAGGTCATGCTCCTACTGGGGAAATGGTT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGACACTGGGGATACTTTGAAGGAACTTTCAAAGGTCATGCTCCTACTGGGGAAATGGTT 648
Query 551 CAATTCCTGGGTCTAGGAGTTCTAAAGGTTGACGAATCACTTAGAGCAGAGGAGATTGAG 610
|||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 649 CAATTCATGGGTCTAGGAGTTCTAAAGGTTGATGAAACGCTTAGAGCAGAGGAGATTGAG 708
Query 611 ATTTACTATGATCCAGGAGAGCTGTTCGGGGGACTACTCAAGGGACCTCCTATATCAGAG 670
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 709 ATTTACTATGATCCAGGAGAGCTGTTCGGGGAACTACTCAAGGGACCTCCTATATCAGAG 768
Query 671 ACCAAAACCACAGACAGTGGAGACAACACTGCAGAGAAACAAAGCTGCCCATTCACACAC 730
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 769 ACCAAAACCACAGACAGAGGGGACAACACTGCAGACAAACAAAGCTGCCCATTCACACAC 828
Query 731 TAA 733
|||
Sbjct 829 TAA 831
> Ahg477039 jgi|Araly1|477039|fgenesh2_kg.2__2169__AT1G78770.1
Length=2237
Score = 187 bits (101), Expect = 1e-46
Identities = 103/104 (99%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 737 AATAAGAAAAGTAGAAGTGTATTTGACCCTTTAAAGAATATATTGTAACAGTCTCTTGGT 796
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2237 AATAAGAAAAGCAGAAGTGTATTTGACCCTTTAAAGAATATATTGTAACAGTCTCTTGGT 2178
Query 797 TATTGATGCATGGAATAAATTATAAGTTATGTTAGGCGTCACAA 840
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 TATTGATGCATGGAATAAATTATAAGTTATGTTAGGCGTCACAA 2134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5