BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G78790.1

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316775 jgi|Araly1|316775|fgenesh1_pm.C_scaffold_2001808           544    4e-154


> Ahg316775 jgi|Araly1|316775|fgenesh1_pm.C_scaffold_2001808
Length=315

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 308/315 (98%), Gaps = 0/315 (0%)
 Strand=Plus/Plus

Query  149  ATGGACGCGAACAATACCTTCGATTCTGATCTGATTCACGCCATTTTTAAGCACATTTGG  208
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATGCGAACAATACCTTCGATTCTGATCTGATTCACGCCATTTTTAAGCACATTTGG  60

Query  209  GCCCGAAGATTTCGCGAAAGGGAGAGGAGCGATGCCATTGATGCTACGGAAGCTGAGGTT  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  61   GCCCGAAGATTTCGCGAAAGGGAGAGGAGCGATGCCATTGATGCTACGGAAGCTGAGATT  120

Query  269  GCTCTGGGAACAACCAAGAAGAACAGACTTGCTTCTGCAAACGCAAATGCTTTAAAACTC  328
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  GCTCTGGGAACAACCAAGAAGAACAGGCTTGCTTCTGCAAACGCAAATGCTTTAAAACTC  180

Query  329  AGCTGTGAACTTCTCAAGAGTTTTGTCTCAGAGGCTGTGCAGCGCGCTGCTATAATCGCT  388
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  AGCTGTGAACTTCTCAAGAGTTTTGTCTCAGAGGCTGTGCAGCGTGCTGCTATAATCGCT  240

Query  389  GAAGCTGAGGGAATGGAAAAGATTGAAGCTACTCATTTAGAGAGGATTCTTCCCCAGCTT  448
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  GAAGCTGAGGGAATGGACAAGATTGAAGCTACTCATTTAGAGAGGATTCTTCCCCAACTT  300

Query  449  CTTCTGGACTTTTAA  463
            ||| |||||||||||
Sbjct  301  CTTTTGGACTTTTAA  315



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25580477307


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5