BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78800.1 Length=1460 Score E Sequences producing significant alignments: (Bits) Value Ahg477043 jgi|Araly1|477043|fgenesh2_kg.2__2173__AT1G78800.1 2204 0.0 > Ahg477043 jgi|Araly1|477043|fgenesh2_kg.2__2173__AT1G78800.1 Length=1439 Score = 2204 bits (1193), Expect = 0.0 Identities = 1330/1396 (95%), Gaps = 9/1396 (1%) Strand=Plus/Plus Query 47 AAATGGCGAAAAAAGAAGGTTCAAAGATGAACATCGCCATTATACATCCAGATCTTGGAA 106 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45 AAATGGGGAAAAAAGAAGGTTCAAAGATGAACATCGCCATTATACATCCAGATCTTGGAA 104 Query 107 TAGGCGGAGCAGAGAGATTGATTGTTGATGCGGCCGTTGAGCTTGCCTCGCACGGTCATA 166 |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 105 TAGGCGGAGCAGAGAGATTGATTGTTGATGCGGCGGTTGAGCTTGCGTCGCATGGTCATA 164 Query 167 AAGTTCATATCTTCACCTCTCACCACGACAAATCCAGATGCTTCGAGGAAACTCTTTCCG 226 | |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 165 ATGTTCATGTCTTTACCTCTCACCACGACAAATCCAGATGCTTCGAGGAAACTCTATCCG 224 Query 227 GTATCTTTCAAGTTACGGTGTATGGATCTTTCCTGCCACGGCATATTTTCTACCGACTAC 286 ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 225 GTATCTTTCGAGTTACGGTGTATGGATCTTTCCTGCCACGGCACATTTTCTACCGACTAC 284 Query 287 ACGCAGTGTGTGCATATTTGCGGTGCTTGTTTGTTGCTCTCTGTGTTCTTTTGGGTTGGT 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 285 ACGCAGTGTGTGCATATTTGCGGTGCTTGTTTGTTGCTCTCTGTGTTCTTTTGGGTTGGT 344 Query 347 CTTCATTCGATGTTGTACTAGCAGACCAAGTTTCAGTCGTAGTCCCATTGCTGAAACTCA 406 |||| ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 345 CTTCGTTCGATGTTATACTAGCAGACCAGGTTTCAGTCGTAGTCCCAGTGCTGAAACTCA 404 Query 407 AAAGGTCATCTAAGGTTGTTTTCTACTGCCATTTCCCGGATCTCTTGCTAGCTAAGCATA 466 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 405 AAAGGTCATCTAAGGTTGTTTTCTACTGCCATTTCCCCGATCTCTTGCTAGCTAAGCATA 464 Query 467 CAACAACACTTAGACGGATGTATCGGAAACCCATTGATTTCATTGAAGAACAAACAACAG 526 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 465 CAACAGCACTTAGACGGATGTATCGGAAACCCATTGATTTCATCGAAGAACAAACCACAG 524 Query 527 GGATGGCTGATATGATCCTTGTTAACAGTAACTTCACGGCATCAACATTTGCCAATACAT 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 GGATGGCTGATATGATCCTTGTTAACAGTAACTTCACGGCATCAACATTTGCCAATACAT 584 Query 587 TTAAAAGGCTAAATGCACAAGGGAGTCGCCCAGCTGTACTTTACCCCGCAGTCAATATTG 646 || ||||||||||||||||||| | |||||||||||| |||||||| ||||||||||| | Sbjct 585 TTCAAAGGCTAAATGCACAAGGAAATCGCCCAGCTGTTCTTTACCCAGCAGTCAATATCG 644 Query 647 ATCAGTTCATTGAACCCCACACTTATAAGTTGAATTTCCTCTCCATAAACCGCTTTGAGA 706 ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 645 ATCAGTTCAATGAATCCCATACTTATAAGTTGAATTTCCTCTCCATAAACCGCTTTGAGA 704 Query 707 GGAAAAAGAACATCGATCTAGCTGTTTCAGCTTTTGCTATCCTATGCAAACATAAGCAAA 766 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 705 GGAAAAAGAACATCGATCTAGCCGTTTCAGCTTTTGCTATGCTATGCAAACATAAGCAAA 764 Query 767 ATCTGAGTGATGTTACCCTTACCGTT----GC-AG-GTGGATATGACGAGCGATTGAAGG 820 |||||||||||||||||||||||||| || || |||||||||| ||||| |||||| Sbjct 765 ATCTGAGTGATGTTACCCTTACCGTTGCAGGCAAGTGTGGATATGATGAGCGGCTGAAGG 824 Query 821 AGAATGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCCGAGAAAGAAGGAGTTTCTGATC 880 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 825 AGAATGTGGAGTACTTGGAGGAGCTCAGAAGTTTAGCCGAGAAAGAAGGAGTTTTTGATC 884 Query 881 GAGTTAACTTTATCACATCTTGTTCAACCGCTGAAAGAAATGAACTTCTCTCAAGCTGCT 940 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 GAGTCAACTTTATCACATCTTGTTCAACCGCTGAAAGAAATGAACTTCTCTCAAGCTGCT 944 Query 941 TGTGCGTTCTCTACACCCCCACGGATGAACATTTTGGTATTGTTCCATTAGAAGCAATGG 1000 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 TGTGCGTTCTCTACACGCCCACGGATGAACATTTTGGTATTGTTCCATTAGAAGCAATGG 1004 Query 1001 CTGCATACAAACCCGTGATAGCCTGCAACAGTGGTGGCCCCGTGGAGACGGTAAAGAATG 1060 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1005 CTGCATACAAACCTGTGATAGCCTGCAACAGCGGTGGCCCCGTGGAGACGGTAAAGAATG 1064 Query 1061 GAGTAACAGGCTATCTTTGTGAACCAACTCCAGAAGATTTCAGTTCGGCGATGGCTAGAT 1120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1065 GAGTAACAGGCTATCTTTGTGAACCGACTCCAGAAGATTTCAGTTCGGCGATGGCTAGAT 1124 Query 1121 TCATCGAGAATCCTGAGTTGGCGAATAGAATGGGAGCTGAAGCCAGGAACCATGTCGTTG 1180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1125 TCATCGAGAATCCTGAGTTGGCGAATAGAATGGGAGCTGAAGCCAGGAATCATGTCGTTG 1184 Query 1181 AATCATTCTCTGTGAAGACGTTTGGACAGAAGTTGAATCAGTATCTCGTTGATGTCGTAT 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1185 AATCATTCTCTGTGAAGACGTTTGGACAGAAGTTGAATCAGTATCTCGTTGATGTCGTAT 1244 Query 1241 CAAGTCCTAAAGAAGATTGAGATTCCTCTGTTTAGTAATCATAGATCGTTCGTGAAACAG 1300 ||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||| Sbjct 1245 CAAGTCCTAAAGAAGATTGAGATTCGTCTGTTTAGCGATCATAGATTGTTCGTTAAACAG 1304 Query 1301 CATACTTTAGGCTTAGTTCTGAAACTACAGGAGCTTTATTCTCGG-ATCACTCATCTTGA 1359 |||||||||||||||| ||||||||||||||||||||||| | || |||| |||| |||| Sbjct 1305 CATACTTTAGGCTTAGGTCTGAAACTACAGGAGCTTTATTGTTGGGATCAATCATGTTGA 1364 Query 1360 CCGTGAAGATTGGTTAAATCTAGGT-GAACAGTTTTTTGTTTGAGGATAAATTTGACGAA 1418 | |||||||||||||||| ||||| || ||||||| |||||| ||||||| |||| ||| Sbjct 1365 ACATGAAGATTGGTTAAATTTAGGTTGA-CAGTTTTGTGTTTGCGGATAAACTTGAGGAA 1423 Query 1419 ATAAAATCGAATCAGT 1434 |||||||||||||||| Sbjct 1424 ATAAAATCGAATCAGT 1439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54621411330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5