BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78800.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477043 jgi|Araly1|477043|fgenesh2_kg.2__2173__AT1G78800.1 2204 0.0
> Ahg477043 jgi|Araly1|477043|fgenesh2_kg.2__2173__AT1G78800.1
Length=1439
Score = 2204 bits (1193), Expect = 0.0
Identities = 1330/1396 (95%), Gaps = 9/1396 (1%)
Strand=Plus/Plus
Query 47 AAATGGCGAAAAAAGAAGGTTCAAAGATGAACATCGCCATTATACATCCAGATCTTGGAA 106
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 AAATGGGGAAAAAAGAAGGTTCAAAGATGAACATCGCCATTATACATCCAGATCTTGGAA 104
Query 107 TAGGCGGAGCAGAGAGATTGATTGTTGATGCGGCCGTTGAGCTTGCCTCGCACGGTCATA 166
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 105 TAGGCGGAGCAGAGAGATTGATTGTTGATGCGGCGGTTGAGCTTGCGTCGCATGGTCATA 164
Query 167 AAGTTCATATCTTCACCTCTCACCACGACAAATCCAGATGCTTCGAGGAAACTCTTTCCG 226
| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 165 ATGTTCATGTCTTTACCTCTCACCACGACAAATCCAGATGCTTCGAGGAAACTCTATCCG 224
Query 227 GTATCTTTCAAGTTACGGTGTATGGATCTTTCCTGCCACGGCATATTTTCTACCGACTAC 286
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 225 GTATCTTTCGAGTTACGGTGTATGGATCTTTCCTGCCACGGCACATTTTCTACCGACTAC 284
Query 287 ACGCAGTGTGTGCATATTTGCGGTGCTTGTTTGTTGCTCTCTGTGTTCTTTTGGGTTGGT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ACGCAGTGTGTGCATATTTGCGGTGCTTGTTTGTTGCTCTCTGTGTTCTTTTGGGTTGGT 344
Query 347 CTTCATTCGATGTTGTACTAGCAGACCAAGTTTCAGTCGTAGTCCCATTGCTGAAACTCA 406
|||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 345 CTTCGTTCGATGTTATACTAGCAGACCAGGTTTCAGTCGTAGTCCCAGTGCTGAAACTCA 404
Query 407 AAAGGTCATCTAAGGTTGTTTTCTACTGCCATTTCCCGGATCTCTTGCTAGCTAAGCATA 466
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 405 AAAGGTCATCTAAGGTTGTTTTCTACTGCCATTTCCCCGATCTCTTGCTAGCTAAGCATA 464
Query 467 CAACAACACTTAGACGGATGTATCGGAAACCCATTGATTTCATTGAAGAACAAACAACAG 526
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 465 CAACAGCACTTAGACGGATGTATCGGAAACCCATTGATTTCATCGAAGAACAAACCACAG 524
Query 527 GGATGGCTGATATGATCCTTGTTAACAGTAACTTCACGGCATCAACATTTGCCAATACAT 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GGATGGCTGATATGATCCTTGTTAACAGTAACTTCACGGCATCAACATTTGCCAATACAT 584
Query 587 TTAAAAGGCTAAATGCACAAGGGAGTCGCCCAGCTGTACTTTACCCCGCAGTCAATATTG 646
|| ||||||||||||||||||| | |||||||||||| |||||||| ||||||||||| |
Sbjct 585 TTCAAAGGCTAAATGCACAAGGAAATCGCCCAGCTGTTCTTTACCCAGCAGTCAATATCG 644
Query 647 ATCAGTTCATTGAACCCCACACTTATAAGTTGAATTTCCTCTCCATAAACCGCTTTGAGA 706
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ATCAGTTCAATGAATCCCATACTTATAAGTTGAATTTCCTCTCCATAAACCGCTTTGAGA 704
Query 707 GGAAAAAGAACATCGATCTAGCTGTTTCAGCTTTTGCTATCCTATGCAAACATAAGCAAA 766
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 705 GGAAAAAGAACATCGATCTAGCCGTTTCAGCTTTTGCTATGCTATGCAAACATAAGCAAA 764
Query 767 ATCTGAGTGATGTTACCCTTACCGTT----GC-AG-GTGGATATGACGAGCGATTGAAGG 820
|||||||||||||||||||||||||| || || |||||||||| ||||| ||||||
Sbjct 765 ATCTGAGTGATGTTACCCTTACCGTTGCAGGCAAGTGTGGATATGATGAGCGGCTGAAGG 824
Query 821 AGAATGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCCGAGAAAGAAGGAGTTTCTGATC 880
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 825 AGAATGTGGAGTACTTGGAGGAGCTCAGAAGTTTAGCCGAGAAAGAAGGAGTTTTTGATC 884
Query 881 GAGTTAACTTTATCACATCTTGTTCAACCGCTGAAAGAAATGAACTTCTCTCAAGCTGCT 940
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GAGTCAACTTTATCACATCTTGTTCAACCGCTGAAAGAAATGAACTTCTCTCAAGCTGCT 944
Query 941 TGTGCGTTCTCTACACCCCCACGGATGAACATTTTGGTATTGTTCCATTAGAAGCAATGG 1000
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TGTGCGTTCTCTACACGCCCACGGATGAACATTTTGGTATTGTTCCATTAGAAGCAATGG 1004
Query 1001 CTGCATACAAACCCGTGATAGCCTGCAACAGTGGTGGCCCCGTGGAGACGGTAAAGAATG 1060
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1005 CTGCATACAAACCTGTGATAGCCTGCAACAGCGGTGGCCCCGTGGAGACGGTAAAGAATG 1064
Query 1061 GAGTAACAGGCTATCTTTGTGAACCAACTCCAGAAGATTTCAGTTCGGCGATGGCTAGAT 1120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1065 GAGTAACAGGCTATCTTTGTGAACCGACTCCAGAAGATTTCAGTTCGGCGATGGCTAGAT 1124
Query 1121 TCATCGAGAATCCTGAGTTGGCGAATAGAATGGGAGCTGAAGCCAGGAACCATGTCGTTG 1180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1125 TCATCGAGAATCCTGAGTTGGCGAATAGAATGGGAGCTGAAGCCAGGAATCATGTCGTTG 1184
Query 1181 AATCATTCTCTGTGAAGACGTTTGGACAGAAGTTGAATCAGTATCTCGTTGATGTCGTAT 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AATCATTCTCTGTGAAGACGTTTGGACAGAAGTTGAATCAGTATCTCGTTGATGTCGTAT 1244
Query 1241 CAAGTCCTAAAGAAGATTGAGATTCCTCTGTTTAGTAATCATAGATCGTTCGTGAAACAG 1300
||||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||
Sbjct 1245 CAAGTCCTAAAGAAGATTGAGATTCGTCTGTTTAGCGATCATAGATTGTTCGTTAAACAG 1304
Query 1301 CATACTTTAGGCTTAGTTCTGAAACTACAGGAGCTTTATTCTCGG-ATCACTCATCTTGA 1359
|||||||||||||||| ||||||||||||||||||||||| | || |||| |||| ||||
Sbjct 1305 CATACTTTAGGCTTAGGTCTGAAACTACAGGAGCTTTATTGTTGGGATCAATCATGTTGA 1364
Query 1360 CCGTGAAGATTGGTTAAATCTAGGT-GAACAGTTTTTTGTTTGAGGATAAATTTGACGAA 1418
| |||||||||||||||| ||||| || ||||||| |||||| ||||||| |||| |||
Sbjct 1365 ACATGAAGATTGGTTAAATTTAGGTTGA-CAGTTTTGTGTTTGCGGATAAACTTGAGGAA 1423
Query 1419 ATAAAATCGAATCAGT 1434
||||||||||||||||
Sbjct 1424 ATAAAATCGAATCAGT 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5