BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78810.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477045 jgi|Araly1|477045|fgenesh2_kg.2__2175__AT1G78810.2 2030 0.0
> Ahg477045 jgi|Araly1|477045|fgenesh2_kg.2__2175__AT1G78810.2
Length=1696
Score = 2030 bits (1099), Expect = 0.0
Identities = 1335/1445 (92%), Gaps = 32/1445 (2%)
Strand=Plus/Plus
Query 36 AACAAAGAATGATGAATATTTACGACGATGAATCTCTGAAGCAAGAAGTAATCTACCTTC 95
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAAAGAATGATGAATCCTTACGACGATGAATCTCTGAAGCAAGAAGTAATCTACCTTC 60
Query 96 ACTCCCTCTGGCATCAAGGTCCTCCTACCCGAAAACCAATCCCTAGCCCTAATTTCAACC 155
|||| |||||||| ||||||||||| |||||||| |||||||||||||| | ||
Sbjct 61 ACTCGCTCTGGCACCAAGGTCCTCCGACCCGAAACCCAATCCCTAGCCC-----T-AA-- 112
Query 156 TGATTCACGACCCGATTCAACGACCCAGACCGAATTACATCCCGCCGTCTGATTTGCAAC 215
| |||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 113 T--TTCA--ACCCGATTCAACGACCCAGGTCGAATTACATCCCGCCGGCGGATTTGCAAC 168
Query 216 TTCTCTCTCGCTATGGAGCTGTTACTCCACAGATCATATCCAGAAACCCTAATAATCCTC 275
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 169 TTCTCTCTCGCTATGGAGCTGTTACTCCACAGATCATATCTAGAAACCCTAACAATCCTC 228
Query 276 AAAATCTCTACAATAACAACAAACGTCCTAGG-CCTGATTCGGGTCGAGAATGGCCCGTC 334
|||||||||||||| ||||| ||||| ||| || ||||||||||||||||||||||||
Sbjct 229 AAAATCTCTACAAT---AACAAGCGTCCGAGGTCC-GATTCGGGTCGAGAATGGCCCGTC 284
Query 335 AATGACGTGCCTCAGCCTCCTTCTACGGGATCTGGATGGCCGGAATACAGGCCGTGTAAA 394
||||| |||| |||| ||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 285 AATGATGTGCTTCAGTCTCCTCCTACGGGATCGGGATGGCCTGAATACAGGCCGTGTAAA 344
Query 395 AAGACTCGACCTATTTCGGCCGAGGAGAAAGAGAAATTGGCGGCGAATATGCTTCAGAGA 454
||| | |||||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 345 AAGGCGCGACCTGTTTCGGTGGAGGAGAAAGAGAAATTGGCTGCGAATATGCTTCAGAGG 404
Query 455 GATATCCATCGCACCTGTCGCGAGTTCTTCGGTCGAAAATCCGGTGAAGAAGATAGCTCA 514
||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 405 GATATTCATCGCACCTGTCGCGAGTTCTTCGGTAGAAAATCCGATGAAGAAGATAGCTCA 464
Query 515 GTCGCCGGAGGAGATGAATCGGAAATCGATGAAGGAGACGAAGATCAGTCTTTGGAGAAA 574
||||| |||||||||||||| ||| |||||||||||||||| ||||||||| |||||||
Sbjct 465 GTCGCTGGAGGAGATGAATCTGAAGTCGATGAAGGAGACGAGGATCAGTCTACGGAGAAA 524
Query 575 GAAGAATCTTCTTCTTCCAAGGAGTTTCAGTTTCTATCGAGAGTTTTTGAAGAGAATGTG 634
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 525 GAAGAA---TCTTCTTCCAAGGAGTTCCAGTTTCTATCGAGAGTGTTTGAAGAGAATGTG 581
Query 635 AAGTTGAAGGAATACTATGAGAAGAACACTGGGAATGGAGAGTTTTGGTGTTTGGTTTGT 694
||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 582 AAGCTCAAGGAATACTATGAGAAGAGCACTGGGAATGGAGAGTTTTGGTGTTTGGTTTGT 641
Query 695 GGTGGCATTGGAGAGAAAAGTTGTAGGAAGTTCAAGAGCTGCTTAGCTTTAATTCAGCAT 754
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 642 GGTGGCACTGGAGAGAAAAGTTGTAGGAAATTCAAGAGCTGCTTGGCTTTAATTCAGCAT 701
Query 755 TCACTTACTATTCACAAGACGGATTTGAAAATTCAGCATAGAGCTCTCGCTCAAGTTGTC 814
|||||| | |||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 702 TCACTTGCGATTCACAAGACGGATTTGAAAACTCAGCATAGAGCTCTTGCACAAGTTGTC 761
Query 815 TGCAATGTTCTTGGCTGGGACGTTAACAATCCAGTTGTTTCTAGCCAAAAAGATTCTCAG 874
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||
Sbjct 762 TGCAATGTTCTTGGCTGGGACGTTACCAATCCAGTTGCTTCTAGCCAAAGAGACGCTCAG 821
Query 875 ACGGTTGTGGAAGGTGCATCTGAGCCGCCTTCAGACTCGAAGATTCCTCAGGAGAAACAA 934
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ACTGTTGTGGAAGGTGCATCTGAGCCGCCTTCAGACTCGAAGATTCCTCAGGAGAAACAA 881
Query 935 CAGGTCATGTCGGTTGAAGAACACGCAAAGGCTGCGGTGTTACAAATGCAACAGAATGCA 994
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 882 CAGGTCATGTCGGTTGAAGAACACGCAAAGGCTGCTGTGTTACAAATGCAACAGAATGCA 941
Query 995 TCAGAAGCTTTGAAAGACATTTTTGTCAAGGATGGTACTGGTGCAGCTGATGGAACTGAG 1054
||||||||||||||||||||||| | ||||||||||||| | ||| |||||||| ||||
Sbjct 942 TCAGAAGCTTTGAAAGACATTTTCGCCAAGGATGGTACTAATTCAGTTGATGGAATTGAG 1001
Query 1055 GAGAACGGTGATGAGAATCTGTCTGAGGAGTTGGAGTTAATATCTAAAGTCTTCTCCGAG 1114
||||| | | | ||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1002 GAGAAAG---A--A-AATTTGTCTGAGGAGTTGGAGTTAATATCTAGAGTCTTCTCAGAG 1055
Query 1115 AATGTTGAGCTCAAGAGTTACTATGAGAAAAACTATGAAGGTGGAGCTTTTATCTGTCTG 1174
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1056 AATGTTGAGCTCAAGAGTTACTATGAGAAAAACTATGAAGGTGGAGCCTTTATCTGTCTG 1115
Query 1175 GTGTGTTGTGCTGCGACTGATAAGAAGATGTTAAAAAGATTCAAACACTGTTATGGAGTT 1234
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1116 ATGTGTTGTGCTGCGACTGATACGAAGATGATAAAAAGATTCAAACACTGTTATGGAGTT 1175
Query 1235 GTTCAACATTGTACTAAAGTACCAAAAATGAAAATACGAGCTCACAAGG-TTTTCGCTCA 1293
||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 1176 GTTCAACATTGTACTAAAGTACCGAAAATGAAAATACGAGCTCACAAGGCTTTT-GCTC- 1233
Query 1294 GTTT-GTCTGTGAACTACTTGGCTGGGATTTTGAGCTTCTACCACGTAGAGTAATGAAAG 1352
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1234 GTTTTGTCTGTGAACTACTTGGCTGGGATTTTGAGCTTCTACCACGTAGAGAAATGAAAG 1293
Query 1353 GCGTTGCTTCTCTTGCTATATCTAATGCTAACGAGAACAATGAGAACACATCATCCA-TG 1411
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||
Sbjct 1294 GCGTTGCTTCTCTTGCTATATTTAATGCTAACGAGAACAATGAGAACCCATCA-CCTGTG 1352
Query 1412 GTCGAGGAACATATGTGCGAAGATAAAGCTGGTAACCCACAGGACAACAATGAGGCTGAG 1471
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1353 GTAGAGGAACATATGTGCGAAGATAAAGCTGATAACCCACAGGACAACAATGAGGCTGAG 1412
Query 1472 GCATG 1476
|||||
Sbjct 1413 GCATG 1417
Score = 226 bits (122), Expect = 5e-58
Identities = 202/236 (86%), Gaps = 23/236 (10%)
Strand=Plus/Plus
Query 1482 AGGCTTAATCATATTGTTTCTCTTCTACGTATTCAATTGAAGAGTCAAAGACTCAAGAGG 1541
||||||||||||||||||||||||||||||||| |||| ||||||| ||| | | |
Sbjct 1481 AGGCTTAATCATATTGTTTCTCTTCTACGTATTAAATTTAAGAGTC-AAG-----A-A-G 1532
Query 1542 CACAAAGTTATGTATATGGAAGGCACTAAATCTTCAGGTACTAT--TATTTAGTTTTCGG 1599
||||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||
Sbjct 1533 CACAAAGTTATGTATATGGAAGGCACTGAATCTTCAGGTACGATCATATTTAGTCTTCGG 1592
Query 1600 CATGTTATCAAACTTCTCACGACTTGGTAATGGAGTCATCAATGACAATATGTATTAGTG 1659
||| ||||||||||||||||||||| || | | | | ||||||||||||||||||
Sbjct 1593 CATCTTATCAAACTTCTCACGACTT--TA-T----T-A--A-TGACAATATGTATTAGTG 1641
Query 1660 TACTCAACTTTTGATTCTGAATTTTGATTAGTTAAAAA-TATTCTGTTCTTTTCTC 1714
||| |||||||||||||| | ||| ||||| ||||||| |||||| ||||||||||
Sbjct 1642 TACCCAACTTTTGATTCTCAGTTTGGATTA-TTAAAAAATATTCTCTTCTTTTCTC 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5