BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78815.1
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927295 jgi|Araly1|927295|scaffold_202856.1 966 0.0
Ahg946331 jgi|Araly1|946331|scaffold_702560.1 93.5 3e-18
> Ahg927295 jgi|Araly1|927295|scaffold_202856.1
Length=617
Score = 966 bits (523), Expect = 0.0
Identities = 593/624 (95%), Gaps = 16/624 (3%)
Strand=Plus/Plus
Query 86 TAACCATCAACGTTCTACCATGGCTAGTCA-TAGCAACAAAGGCAAAGGCATAGCAGAAG 144
|||||||||||| ||||||||||||||| | |||||||||||| ||||| ||||||||||
Sbjct 3 TAACCATCAACGATCTACCATGGCTAGT-ACTAGCAACAAAGGTAAAGGAATAGCAGAAG 61
Query 145 GATCGTCTCAACCGCAATCGCAACCGCAACCACAACCACACCAACCGCAATCACCTCCTA 204
||||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GATCG--T------C--T--CAACCGCAACCACAACCACACCAACCGCAATCACCTCCTA 109
Query 205 ACCCGCCAGCGTTAAGCCGGTACGAGTCACAGAAACGACGAGACTGGAACACGTTTTGTC 264
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 110 ACCCGCCAGCGTTAAGCCGGTACGAGTCACAGAAAAGGCGAGACTGGAACACGTTTTGTC 169
Query 265 AATACCTGCGTAACCAACAGCCACCGGTTCACATCTCGCAGTGTGGATCAAACCACATCC 324
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 170 AATACCTGCGTAACCAACAGCCACCGGTTCACATCTCGCAGTGTGGCTCAAACCACATCC 229
Query 325 TCGATTTCCTCCAATATCTCGACCAGTTTGGGAAGACAAAGGTTCATATCCATGGATGCG 384
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 230 TAGATTTCCTCCAATATCTCGACCAATTCGGGAAGACAAAGGTTCATATCCATGGATGCG 289
Query 385 TTTTCTTCGGACAGGTTGAGCCAGCGGGACAGTGTAACTGTCCTTTAAAACAAGCGTGGG 444
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 290 TTTTCTTCGGACAGGTTGAGCCAGCGGGACAGTGTAACTGTCCTTTGAAACAAGCGTGGG 349
Query 445 GGAGTTTAGATGCTTTGATCGGACGGCTAAGAGCGGCTTTCGAGGAGAACGGAGGATTGC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 350 GGAGTTTAGATGCTTTGATCGGACGGCTAAGAGCGGCTTTCGAGGAGAACGGAGGGTTGC 409
Query 505 CGGAGAGAAACCCTTTTGCCGGCGGCGGAATTAGGGTTTTTCTGAGGGAAGTGAGAGATT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CGGAGAGAAACCCTTTTGCCGGCGGCGGAATTAGGGTTTTTCTGAGGGAAGTGAGAGATT 469
Query 565 CACAGGCGAAGGCAAGAGGAGTTCCGTACAAGAAAAGAAAAAAGAGGAAGAAGAGGAATC 624
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 470 CACAGGCGAAGGCAAGAGGAGTTCCGTACAAGAAAAGGAAGAAGAGGAAGAAGAGGAATC 529
Query 625 CTATGAAGAGTCATGATGGTGAAGATGGTACTACGGGAACTAGTAGTAGCTCCAACTTGG 684
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 530 CAATGAAGAGTCATGATGGTGAAGATGGTACTACGGGAACTACTAGTAGCTCCAACTTG- 588
Query 685 CTT-CTTAGCGGAAGCAAACAAAA 707
||| ||||||||||||||||||||
Sbjct 589 CTTTCTTAGCGGAAGCAAACAAAA 612
> Ahg946331 jgi|Araly1|946331|scaffold_702560.1
Length=619
Score = 93.5 bits (50), Expect = 3e-18
Identities = 207/280 (74%), Gaps = 21/280 (8%)
Strand=Plus/Plus
Query 348 CAGTTTGGGAAGA-CAAAGGTTCAT-ATCCATGGATGCGTTTTCTTCGGACAGGTTGAGC 405
|||||||| |||| |||| || ||| || || | || || ||||||||||| || |
Sbjct 255 CAGTTTGGTAAGACCAAA-GTACATCAT-CAAGCTTGTGTCTTCTTCGGACAACCCGATC 312
Query 406 CAGCGGGACAGTGTAAC-TGTCCTTTAAAACAAGCGTGGGGGAGTTTAGATGCTTTGATC 464
|| | || | ||| || |||||| | |||||||| ||||| || ||||||||||||||
Sbjct 313 CACCAGGTCCGTG-CACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAGATGCTTTGATC 371
Query 465 GGACGGCTAAGAGCGGCTTTCGAGGAGA-ACGGAGGATTG-C-CG-GA-GAGAAACCCTT 519
|||||||||||||| |||| |||||| | |||| || | | | || | || ||| |
Sbjct 372 GGACGGCTAAGAGCTGCTTACGAGGA-ACACGGTGGCGGGTCACCTGATGCTAA-CCCGT 429
Query 520 TTGCCGGCGGCGGA-ATTAGGGTTTTTCT-GAGGGAAGTGAGAGATTCACAGGCGAAGGC 577
|||| ||| | || ||||| || ||||||||||||||| || || || |||||
Sbjct 430 TTGCAAACGG-GTCTATCCGGGTTCA-CTTGAGGGAAGTGAGAGAATCTCAAGCCAAGGC 487
Query 578 AAGAGG-AGTTCCGTACAAGAA-AAGAAAAAAGAGGAAGA 615
| || | ||||||||| ||| ||||| | ||||||||
Sbjct 488 TCGTGGGA-TTCCGTACAGGAAGAAGAAGAG-GAGGAAGA 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37284212826
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5