BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78820.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927296 jgi|Araly1|927296|scaffold_202857.1 2126 0.0
Ahg477046 jgi|Araly1|477046|fgenesh2_kg.2__2176__AT1G78830.1 1631 0.0
> Ahg927296 jgi|Araly1|927296|scaffold_202857.1
Length=1409
Score = 2126 bits (1151), Expect = 0.0
Identities = 1318/1400 (94%), Gaps = 6/1400 (0%)
Strand=Plus/Plus
Query 27 AAACATAAAGAACACAACCATGCTTAGGTTTGATTACTTACTAATCACGGCACTTGCCAT 86
|||| |||||| ||||| ||||||| ||||||||| |||| ||||||||||||| |||||
Sbjct 2 AAACGTAAAGAGCACAATCATGCTTCGGTTTGATTTCTTAGTAATCACGGCACTCGCCAT 61
Query 87 TTCAACTGTTTCGGTTGTCATGGCCCAAGTCCCTCCCGAGAAACAATTCAGAGTGCTCAA 146
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 TTCCACTGTTTCGGTGGTCATGGCCCAAGTCCCTCCCGAGAAACAATTCAGAGTCCTCAA 121
Query 147 CGAACCCGGCTACGCCCCATACATCACCGAGTACGACGCGAGTTACCGATTCCTCAACTC 206
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 122 CGAACCCTCCTACGCCCCATACATAACCGAGTACGACGCGAGTTACCGATTCCTCAACTC 181
Query 207 ACCGAATCAGAATTTCTTCACAATTCCTTTCCAGCTCATGTTTTACAATACAACTCCTAG 266
|||||||||| | ||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 182 ACCGAATCAGGACTTCTTCACATTTCCTTTCCAGCTCATGTTCTACAATACTACTCCTAG 241
Query 267 CGCCTACGTGTTAGCTCTCCGAGTCGGAACGAGGCGTGACATGAGTTTCACGCGTTGGAT 326
||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 242 CGCCTACGTTTTAGCTCTCCGAGTCGGATCCAGGCGTGACATGAGTTTCACGCGTTGGAT 301
Query 327 CTGGGACGCCAATCGCAACAACCCCGTCGGAGACAACTCCACACTCTCATTCGGCCGAAA 386
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 302 CTGGGACGCCAATCGCAACAACCCCGTCGGTGACAACTCCACACTCTCACTCGGCCGCAA 361
Query 387 CGGAAACCTTGTGCTCGCTGAGTTAAACGGCCAAGTCAAGTGGCAGACTAACACAGCCAA 446
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 362 CGGCAACCTTGTGCTCGCTGAGTTAAACGGCCACGTCAAGTGGCAGACTAACACAGCCAA 421
Query 447 CAAAGGCGTCACCGGATTCCAAATCTTGCCCAATGGAAACATGGTGCTACACGACAAACA 506
|||||| |||||||||||| | ||||||||||| || |||||||||||||||||||||||
Sbjct 422 CAAAGGTGTCACCGGATTCGAGATCTTGCCCAACGGCAACATGGTGCTACACGACAAACA 481
Query 507 TGGAAAATTCGTTTGGCAGAGTTTCGATCATCCC-ACCGATACACTCCTCGTCGGCCAAT 565
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 482 TGGAAAATTCGTTTGGCAGAGTTTTGATCA-CCCAACCGATACACTCCTCGTCGGCCAAT 540
Query 566 CCCTAAAAGTTAACGGAGTTAACAAACTCGTTAGCCGTACATCTGATATGAACGGCTCCG 625
|||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 541 CCCTAAAAGTTAACGGTGTTAACAAACTCGTTAGCCGGACATCTGCTATGAACGGCTCCG 600
Query 626 ATGGTCCGTACAGCATGGTGTTGGACAACAAAGGCTTAACCATGTACGTTAACAAAACCG 685
|||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||
Sbjct 601 ATGGTCCGTACAGCATGGTGCTGGAAAACAAAGGTTTAACCATGTACGTTAACAGAACCG 660
Query 686 GTACGCCGTTAGTTTACGGGGGATGGACGGATCACGACTTCCGCGGTACCGTCACGTTCG 745
||| ||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||
Sbjct 661 GTAAGCCGTTAGTTTACGGCGGATGGCCGGATCACGATTTCCGCGGCACCGTCACGTTCG 720
Query 746 CCGTTACAAGAGAGTTCGATAATTTAACGGAGCCGTCAGCTTACGAGCTTCTCTTAGAAC 805
| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 CTGTTACAAGAGAGTTCGACAATTTAACGGAGCCGTCAGCTTACGAGCTTCTCCTAGAAC 780
Query 806 CCGCACCACAACCCGCTACGAACCCGGGTAATAACCGCCGGTTACTCCAAGTTAGACCAA 865
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 781 CCGCACCACAACCCGCTACGAATCCGGGTAATAACCGCCGGTTACTCCAAGTCCGACCAA 840
Query 866 TCGGAAGCGGAGGAGGAACTTTAAACT-TAAACAAAATCAACTACAATGGAACGATATCG 924
||||||||||||||||||||||||| | | ||||||||||| ||||| |||||||| |||
Sbjct 841 TCGGAAGCGGAGGAGGAACTTTAAA-TCTGAACAAAATCAATTACAACGGAACGATTTCG 899
Query 925 TATCTGAGACTTGGATCCGACGGTAGCCTCAAGGCCTT-CTCGTATTTCCCTGCCGCGAC 983
||||| ||||| ||||| ||||| || ||||||| ||| |||||||||||| ||||||||
Sbjct 900 TATCTCAGACTCGGATCTGACGGGAGTCTCAAGG-CTTACTCGTATTTCCCAGCCGCGAC 958
Query 984 GTATCTCGAATGGGAAGAGACTTTCGCTTTCTTCTCCAATTACTTCGTCCGTCAATGCGG 1043
|||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||
Sbjct 959 GTATCTCGAATGGGAAGAGAGTTTCTCATTCTTCTCCACTTACTTCGTCCGTCAATGCGG 1018
Query 1044 TTTGCCGACGTTTTGCGGCGATTACGGTTACTGCGATCGAGGAATGTGCGTCGGGTGCCC 1103
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1019 TTTGCCGACGTTTTGCGGCGATTACGGTTACTGCAATCGAGGAATGTGCGTCGGATGCCC 1078
Query 1104 TACACCGAAAGGTCTGTTAGCTTGGAGTGATAAATGCGCTCCACCTAAAACGACGCAGTT 1163
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 TACACCGAAAGGTCTGTTAGCTTGGAGTGATAAATGCGCACCACCTAAAACGACGCAGTT 1138
Query 1164 TTGCAGCGGAGGCAAGGGTAAAGCTGTCAATTATTACAAGATAGTCGGTGTTGAGCATTT 1223
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTGTAGCGGAGGCAAGGGTAAAACTGTCAATTATTACAAGATAGTCGGTGTTGAGCATTT 1198
Query 1224 TACTGGGCCGTATGTTAATGATGGACAAGGCCCAACTTCTGTGAACGATTGCAAGGCTAA 1283
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TACTGGGCCTTATGTTAATGGTGGACAAGGCCCAACTTCTGTGAACGATTGCAAGGCTAA 1258
Query 1284 GTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGAGAAGGACAAGAAATGTTT 1343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGAGAAGGACAAGAAATGTTT 1318
Query 1344 GCTTGCTCCTCTTCTTGGTACACTTATCAAAGATGCCAACACTTCTTCCGTTGCTTACAT 1403
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 1319 GCTTGCTCCTCTTCTTGGTACACTTATTAAAGACGCCAACACTTCTTCCATTGCTTACAT 1378
Query 1404 CAAATATTAGCGAGATTTAT 1423
|||||||||||||| |||||
Sbjct 1379 CAAATATTAGCGAGTTTTAT 1398
> Ahg477046 jgi|Araly1|477046|fgenesh2_kg.2__2176__AT1G78830.1
Length=1515
Score = 1631 bits (883), Expect = 0.0
Identities = 1245/1416 (88%), Gaps = 39/1416 (3%)
Strand=Plus/Plus
Query 76 GCACTTGCCATTTCAACTGTTTCGGTTGTCATGGCCCAAGTCCCTCCCGAGAAACAATTC 135
|||||||||||| | |||||||| || || || || ||||||||||| ||||||||||||
Sbjct 73 GCACTTGCCATTGCCACTGTTTCAGTGGTTATAGCTCAAGTCCCTCCAGAGAAACAATTC 132
Query 136 AGAGTGCTCAACGAACCCGGCTACGCCCCATACATCACCGAGTACGACGCGAGTTACCGA 195
||||| ||||||||| || | || | ||||||||||||||||||||| |||||| |
Sbjct 133 AGAGTCCTCAACGAAGGCGAATTCGGTCAATACATCACCGAGTACGACGCAAGTTACAGG 192
Query 196 TTCCTC-AACTCACCGAATCAGAATTTCTTCACAAT-TCCTTTCCAGCTCATGTTTTACA 253
||| || || ||| | || |||| |||||||| || || ||||||||| |||||||||
Sbjct 193 TTCATCGAA-TCATCAAACCAGAGCTTCTTCAC-ATCACCATTCCAGCTCTTGTTTTACA 250
Query 254 ATACAACTCCTAGCGCCTACGTGTTAGCTCTCCGAGTCGGAAC-GAGGCGTGACATGAGT 312
| || || |||||||||||||| |||| |||||||||||| || ||||||||| ||||
Sbjct 251 ACACTACCCCTAGCGCCTACGTCTTAGGTCTCCGAGTCGG-ACTCAGGCGTGAC--GAGT 307
Query 313 -T-TCACGCGTTGGATCTGGGACGCCAATCGCAACAACCCCGTCGGAGACAACTCCACAC 370
| || ||||||||| |||||||| ||||||||||| ||||||||||| ||| | ||||
Sbjct 308 CTACCATGCGTTGGATATGGGACGCAAATCGCAACAATCCCGTCGGAGAAAACGCTACAC 367
Query 371 TCTCATTCGGCCGAAACGGAAACCTTGTGCTCGCTG-AGTTAAACGGCCAAGTCAAGTGG 429
||||| ||||||| ||||| ||||| || ||||||| || | |||| | ||||||||||
Sbjct 368 TCTCACTCGGCCGTAACGGCAACCTCGTCCTCGCTGAAGCT-GACGGACGAGTCAAGTGG 426
Query 430 CAGACTAACACAGCCAACAAAGGCGTCACCGGATTCCAAATCTTGCCCAATGGAAACATG 489
|||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 427 CAGACTAACACAGCTAACAAAGGCGTCACCGGATTCCAAATCTTACCCAACGGCAACATG 486
Query 490 GTGCTACACGACAAACATGGAAAATTCGTTTGGCAGAGTTTCGATCATCCCACCGATACA 549
|| |||||||||||| | || |||||||||||||||||||| ||||| ||||||||||||
Sbjct 487 GTCCTACACGACAAAAACGGCAAATTCGTTTGGCAGAGTTTTGATCACCCCACCGATACA 546
Query 550 CTCCTCGTCGGCCAATCCCTAAAAGTTAACGGAGTTAACAAACTCGTTAGCCGTACATCT 609
|||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||
Sbjct 547 CTCCTCAACGGCCAGTCGTTAAAAGTTAACGGCGTTAACAAACTCGTTAGCCGTACATCC 606
Query 610 GATATGAACGGCTCCGATGGTCCGTACAGCATGGTGTTGGACAACAAAGGCTTAACCATG 669
||| | |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 607 GATTTAAACGGCTCAGATGGTCCGTACAGCATAGTGTTGGACAACAAAGGTTTAACCATG 666
Query 670 TACGTTAACAAAACCGGTACGCCGTTAGTTTACGGGGGATGGACGGATCACGACTTCCGC 729
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 667 TACGTTAACAAAACCGGTACGCCGTTAGTTTACGGCGGATGGCCGGATCACGATTTCCGC 726
Query 730 GGTACCGTCACGTTCGCCGTTACAAGAGAGTTCGATAATTTAACGGAGCCGTCAGCTTAC 789
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GGCACCGTAACGTTCGCCGTTACAAGAGAGTTCGATAATTTAACGGAGCCGTCAGCTTAC 786
Query 790 GAGCTTCTCTTAGAACCCGCACCACAACCCGCTACGAACCCGGGTAATAACCGCCGGTTA 849
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 787 GAGCTTCTCCTAGAACCCGCACCACAACCCGCTACAAATCCGGGTAATAACCGCCGGTTA 846
Query 850 CTCCAAGTTAGACCAATCGGAAGCGGAGGAGGAACTTTAAA-CTTAAACAAAATCAACTA 908
||||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||
Sbjct 847 CTCCAAGTTAGACCAATCGGAAGCGGAGGAGGAACTTTAAATCTGAA-CAAAATCAATTA 905
Query 909 CAATGGAACGATATCGTATCTGAGACTTGGATCCGACGGTAGCCTCAAGGCCTT-CTCGT 967
||| |||||||| |||||||| ||||| ||||| ||||| || || ||||| || |||||
Sbjct 906 CAACGGAACGATTTCGTATCTCAGACTCGGATCTGACGGGAGTCTTAAGGC-TTACTCGT 964
Query 968 ATTTCCCTGCC-GCGACGTATCTCGAATGGGAAGAGACTTTCGCTTTCTTCTCCAATTAC 1026
||||||| || || ||||||||| |||||||||||| |||| | |||||||||| ||||
Sbjct 965 ATTTCCCA-CCAGCTACGTATCTCAAATGGGAAGAGAGTTTCTCATTCTTCTCCACTTAC 1023
Query 1027 TTCGTCCGTCAATGCGGTTTGCCGACGTTTTGCGGCGATTACGGTTACTGCGATCGAGGA 1086
|||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1024 TTCGTCCGTCAATGTGGCTTACCGTCGTTTTGCGGCGATTACGGTTACTGCGATCGAGGG 1083
Query 1087 ATGTGCGTCGGGTGCCCTACACCGAAAGG-TCTGTTAGCTTGGAGTGATAAATGCGCTCC 1145
|||||| ||| ||| |||||||| ||||| | | | | ||||||||||||||||| ||
Sbjct 1084 ATGTGCATCGCGTGTCCTACACCAAAAGGAT-TACTCGGATGGAGTGATAAATGCGCACC 1142
Query 1146 ACCTAAAACGACGCAGTTTTGCAGCGGAGGCAAGGGTAAAGCTGTCAATTATTACAAGAT 1205
|||||||||||||||||||||||||||| || | |||||||| ||||| |||||
Sbjct 1143 ACCTAAAACGACGCAGTTTTGCAGCGGA---AA----A--GCTGTCAACTATTATAAGAT 1193
Query 1206 AGTCGGTGTTGAGCATTTTACTGGGCCGTATGTTAATGATGGACAAGGCCCAACTTCTGT 1265
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1194 AGTCGGTGTTGAGCATTTTACTGGGCCTTATGTTAATGATGGACAAGGCCCAACTTCTGT 1253
Query 1266 GAACGATTGCAAGGCTAAGTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGA 1325
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GAACGATTGCAAGGCCAAGTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGA 1313
Query 1326 GAAGGACAAGAAATGTTTGCTTGCTCCTCTTCTTGGTACACTTATCAAAGATGCCAACAC 1385
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1314 GAAAGACAAGAAGTGTTTGCTTGCTCCTCTTCTCGGTACACTTATCAAAGATGCCAACAC 1373
Query 1386 TTCTTCCGTTGCTTACATCAAATATTAGCG----A--G-A---TTTATAAACCGAAACCA 1435
|||||| |||||||| |||||||||||| | | | | |||||| |||||| |
Sbjct 1374 TTCTTCTGTTGCTTATATCAAATATTAGTGTTTTATCGCAAGGTTTATATACCGAATTCT 1433
Query 1436 ACGTGAATTCTCATAGATTTAATGAATAATTGGTGT 1471
|| |||||||| | ||| ||||||||||||||||||
Sbjct 1434 ACTTGAATTCTTAGAGAATTAATGAATAATTGGTGT 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5