BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78830.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477046 jgi|Araly1|477046|fgenesh2_kg.2__2176__AT1G78830.1 2292 0.0
Ahg927296 jgi|Araly1|927296|scaffold_202857.1 1736 0.0
> Ahg477046 jgi|Araly1|477046|fgenesh2_kg.2__2176__AT1G78830.1
Length=1515
Score = 2292 bits (1241), Expect = 0.0
Identities = 1407/1486 (95%), Gaps = 15/1486 (1%)
Strand=Plus/Plus
Query 1 TACATAATCATCTCACTCCTTTACTCACACAAGAAAACAAAATCATGTCTCGATTTGC-T 59
||||||||||||||| |||| || | | ||| ||||||||||||||||||||||| |
Sbjct 1 TACATAATCATCTCAGTCCTCAAC-C-CCCAAAAAAACAAAATCATGTCTCGATTT-CAC 57
Query 60 ATCTTAGTAACCTTGGCACTTGCCATTGCCACTGTTTCGGTGGTTATAGCTCAAGTCCCT 119
|||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 58 ATCTTATTAACTTTAGCACTTGCCATTGCCACTGTTTCAGTGGTTATAGCTCAAGTCCCT 117
Query 120 CCGGAGAAACAATTCAGAGTCGTCAACGAAGGAGAATTCGGTGAATACATCACTGAGTAC 179
|| |||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||
Sbjct 118 CCAGAGAAACAATTCAGAGTCCTCAACGAAGGCGAATTCGGTCAATACATCACCGAGTAC 177
Query 180 GACGCAAGTTACAGATTCATCGAATCATCAAACCAGAGCTTCTTCACATCACCATTCCAG 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GACGCAAGTTACAGGTTCATCGAATCATCAAACCAGAGCTTCTTCACATCACCATTCCAG 237
Query 240 CTCTTGTTTTACAACACTACCCCTAGCGCCTACATCTTAGCTCTCCGAGTCGGACTCAGG 299
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 238 CTCTTGTTTTACAACACTACCCCTAGCGCCTACGTCTTAGGTCTCCGAGTCGGACTCAGG 297
Query 300 CGTGACGAGTCTACCATGCGTTGGATATGGGACGCGAATCGCAACAACCCCGTCGGAGAA 359
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 298 CGTGACGAGTCTACCATGCGTTGGATATGGGACGCAAATCGCAACAATCCCGTCGGAGAA 357
Query 360 AACGCTACACTCTCACTCGGCCGTAACGGCAACCTCGTCCTCGCTGAAGCTGACGGACGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AACGCTACACTCTCACTCGGCCGTAACGGCAACCTCGTCCTCGCTGAAGCTGACGGACGA 417
Query 420 GTCAAATGGCAGACTAACACAGCTAACAAAGGCGTCACCGGATTCCAAATCTTACCCAAC 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTCAAGTGGCAGACTAACACAGCTAACAAAGGCGTCACCGGATTCCAAATCTTACCCAAC 477
Query 480 GGAAACATCGTCCTACACGACAAAAACGGCAAATTCGTATGGCAGAGTTTCGATCACCCC 539
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 478 GGCAACATGGTCCTACACGACAAAAACGGCAAATTCGTTTGGCAGAGTTTTGATCACCCC 537
Query 540 ACCGATACACTCCTCACCGGCCAATCGTTAAAAGTTAACGGAGTCAACAAACTCGTTAGC 599
|||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||
Sbjct 538 ACCGATACACTCCTCAACGGCCAGTCGTTAAAAGTTAACGGCGTTAACAAACTCGTTAGC 597
Query 600 CGTACATCTGATTCGAACGGCTCAGATGGTCCGTACAGCATGGTGCTGGACAAAAAAGGT 659
|||||||| |||| |||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 598 CGTACATCCGATTTAAACGGCTCAGATGGTCCGTACAGCATAGTGTTGGACAACAAAGGT 657
Query 660 TTAACCATGTACGTTAACAAAACCGGTACGCCGTTAGTTTACGGCGGATGGCCGGATCAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTAACCATGTACGTTAACAAAACCGGTACGCCGTTAGTTTACGGCGGATGGCCGGATCAC 717
Query 720 GATTTCCGCGGCACCGTCACTTTCGCCGTTACAAGAGAATTCGATAATTTAACGGAGCCG 779
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 718 GATTTCCGCGGCACCGTAACGTTCGCCGTTACAAGAGAGTTCGATAATTTAACGGAGCCG 777
Query 780 TCAGCTTACGAGCTTCTCTTAGAACCCGCACCACAACCCGCTACGAACCCGGGTAATAAC 839
|||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 778 TCAGCTTACGAGCTTCTCCTAGAACCCGCACCACAACCCGCTACAAATCCGGGTAATAAC 837
Query 840 CGCCGGTTACTCCAAGTCAGACCAATCGGAAGCGGAGGAGGAACTTTAAATCTGAACAAA 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CGCCGGTTACTCCAAGTTAGACCAATCGGAAGCGGAGGAGGAACTTTAAATCTGAACAAA 897
Query 900 ATCAATTACAACGGAACGATTTCGTATCTAAGACTCGGATCTGACGGGAGTCTCAAGGCT 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 898 ATCAATTACAACGGAACGATTTCGTATCTCAGACTCGGATCTGACGGGAGTCTTAAGGCT 957
Query 960 TACTCGTATTTCCCAGCAGCTACGTATCTCAAATGGGAAGAGAGTTTCTCATTCTTCTCC 1019
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TACTCGTATTTCCCACCAGCTACGTATCTCAAATGGGAAGAGAGTTTCTCATTCTTCTCC 1017
Query 1020 ACTTACTTCGTCCGTCAATGTGGCTTGCCGTCGTTTTGCGGCGATTACGGTTACTGCGAT 1079
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 ACTTACTTCGTCCGTCAATGTGGCTTACCGTCGTTTTGCGGCGATTACGGTTACTGCGAT 1077
Query 1080 CGTGGGATGTGCAACGCGTGTCCTACACCAAAAGGATTACTCGGATGGAGTGATAAATGC 1139
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CGAGGGATGTGCATCGCGTGTCCTACACCAAAAGGATTACTCGGATGGAGTGATAAATGC 1137
Query 1140 GCACCACCTAAAACGACGCAGTTTTGCAGCGGAGTCAAGGGTAAAACTGTCAATTATTAT 1199
||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 1138 GCACCACCTAAAACGACGCAGTTTTGCAGCGGAA--AAG-------CTGTCAACTATTAT 1188
Query 1200 AAGATAGTCGGTGTTGAGCATTTTACTGGGCCTTATGTTAATGATGGACAAGGCCCAACT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AAGATAGTCGGTGTTGAGCATTTTACTGGGCCTTATGTTAATGATGGACAAGGCCCAACT 1248
Query 1260 TCTGTGAACGATTGCAAGGCCAAGTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTAC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 TCTGTGAACGATTGCAAGGCCAAGTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTAC 1308
Query 1320 AAAGAGAAAGACAAGAAATGTTTGCTTGCTCCTCTGCTTGGTACACTTATCAAAGATGCC 1379
|| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1309 AAGGAGAAAGACAAGAAGTGTTTGCTTGCTCCTCTTCTCGGTACACTTATCAAAGATGCC 1368
Query 1380 AACACTTCTTCTGTTGCTTACATCAAATATTAGTGtttttttGGGAAAGTT-ATTTACCG 1438
|||||||||||||||||||| |||||||||||||||||| | | || ||| || |||||
Sbjct 1369 AACACTTCTTCTGTTGCTTATATCAAATATTAGTGTTTTATCGC-AAGGTTTATATACCG 1427
Query 1439 AATTCTTTTTGAATTCTTAGAGATTTAATGAATAATCGGTGTGCTT 1484
|||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct 1428 AATTCTACTTGAATTCTTAGAGAATTAATGAATAATTGGTGTGCTT 1473
> Ahg927296 jgi|Araly1|927296|scaffold_202857.1
Length=1409
Score = 1736 bits (940), Expect = 0.0
Identities = 1240/1384 (90%), Gaps = 24/1384 (2%)
Strand=Plus/Plus
Query 41 AATCATGTC-TCGATTTGCTATCTTAGTAACCTTGGCACTTGCCATTGCCACTGTTTCGG 99
||||||| | ||| |||| | ||||||||| | |||||| |||||| ||||||||||||
Sbjct 17 AATCATG-CTTCGGTTTGATTTCTTAGTAATCACGGCACTCGCCATTTCCACTGTTTCGG 75
Query 100 TGGTTATAGCTCAAGTCCCTCCGGAGAAACAATTCAGAGTCGTCAACGAAGGAGAATTCG 159
|||| || || ||||||||||| |||||||||||||||||| |||||||| | ||
Sbjct 76 TGGTCATGGCCCAAGTCCCTCCCGAGAAACAATTCAGAGTCCTCAACGAACCCTCCTACG 135
Query 160 GTGAATACATCACTGAGTACGACGCAAGTTACAGATTCATCGAA-TCATCAAACCA-GAG 217
|||||| || ||||||||||| |||||| ||||| || || ||| | || || ||
Sbjct 136 CCCCATACATAACCGAGTACGACGCGAGTTACCGATTCCTC-AACTCACCGAATCAGGA- 193
Query 218 CTTCTTCACATCACCATTCCAGCTCTTGTTTTACAACACTACCCCTAGCGCCTACATCTT 277
||||||||||| || ||||||||| |||| ||||| ||||| |||||||||||| | ||
Sbjct 194 CTTCTTCACATTTCCTTTCCAGCTCATGTTCTACAATACTACTCCTAGCGCCTACGTTTT 253
Query 278 AGCTCTCCGAGTCGGACT-CAGGCGTGAC--GAGTCTACCATGCGTTGGATATGGGACGC 334
|||||||||||||||| | |||||||||| |||| | || ||||||||| ||||||||
Sbjct 254 AGCTCTCCGAGTCGGA-TCCAGGCGTGACATGAGT-T-TCACGCGTTGGATCTGGGACGC 310
Query 335 GAATCGCAACAACCCCGTCGGAGAAAACGCTACACTCTCACTCGGCCGTAACGGCAACCT 394
|||||||||||||||||||| || ||| | ||||||||||||||||| |||||||||||
Sbjct 311 CAATCGCAACAACCCCGTCGGTGACAACTCCACACTCTCACTCGGCCGCAACGGCAACCT 370
Query 395 CGTCCTCGCTGAAGCT-GACGGACGA-GTCAAATGGCAGACTAACACAGCTAACAAAGGC 452
|| ||||||| || | |||| | | ||||| ||||||||||||||||| ||||||||
Sbjct 371 TGTGCTCGCTG-AGTTAAACGG-CCACGTCAAGTGGCAGACTAACACAGCCAACAAAGGT 428
Query 453 GTCACCGGATTCCAAATCTTACCCAACGGAAACATCGTCCTACACGACAAAAACGGCAAA 512
|||||||||||| | ||||| |||||||| ||||| || |||||||||||| | || |||
Sbjct 429 GTCACCGGATTCGAGATCTTGCCCAACGGCAACATGGTGCTACACGACAAACATGGAAAA 488
Query 513 TTCGTATGGCAGAGTTTCGATCACCCCACCGATACACTCCTCACCGGCCAATCGTTAAAA 572
||||| ||||||||||| |||||||| ||||||||||||||| ||||||||| |||||
Sbjct 489 TTCGTTTGGCAGAGTTTTGATCACCCAACCGATACACTCCTCGTCGGCCAATCCCTAAAA 548
Query 573 GTTAACGGAGTCAACAAACTCGTTAGCCGTACATCTGAT-TCGAACGGCTCAGATGGTCC 631
|||||||| || ||||||||||||||||| ||||||| | | ||||||||| ||||||||
Sbjct 549 GTTAACGGTGTTAACAAACTCGTTAGCCGGACATCTGCTAT-GAACGGCTCCGATGGTCC 607
Query 632 GTACAGCATGGTGCTGGACAAA-AAAGGTTTAACCATGTACGTTAACAAAACCGGTACGC 690
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 608 GTACAGCATGGTGCTGGA-AAACAAAGGTTTAACCATGTACGTTAACAGAACCGGTAAGC 666
Query 691 CGTTAGTTTACGGCGGATGGCCGGATCACGATTTCCGCGGCACCGTCACTTTCGCCGTTA 750
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 667 CGTTAGTTTACGGCGGATGGCCGGATCACGATTTCCGCGGCACCGTCACGTTCGCTGTTA 726
Query 751 CAAGAGAATTCGATAATTTAACGGAGCCGTCAGCTTACGAGCTTCTCTTAGAACCCGCAC 810
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 727 CAAGAGAGTTCGACAATTTAACGGAGCCGTCAGCTTACGAGCTTCTCCTAGAACCCGCAC 786
Query 811 CACAACCCGCTACGAACCCGGGTAATAACCGCCGGTTACTCCAAGTCAGACCAATCGGAA 870
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 787 CACAACCCGCTACGAATCCGGGTAATAACCGCCGGTTACTCCAAGTCCGACCAATCGGAA 846
Query 871 GCGGAGGAGGAACTTTAAATCTGAACAAAATCAATTACAACGGAACGATTTCGTATCTAA 930
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 847 GCGGAGGAGGAACTTTAAATCTGAACAAAATCAATTACAACGGAACGATTTCGTATCTCA 906
Query 931 GACTCGGATCTGACGGGAGTCTCAAGGCTTACTCGTATTTCCCAGCAGCTACGTATCTCA 990
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 907 GACTCGGATCTGACGGGAGTCTCAAGGCTTACTCGTATTTCCCAGCCGCGACGTATCTCG 966
Query 991 AATGGGAAGAGAGTTTCTCATTCTTCTCCACTTACTTCGTCCGTCAATGTGGCTTGCCGT 1050
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 967 AATGGGAAGAGAGTTTCTCATTCTTCTCCACTTACTTCGTCCGTCAATGCGGTTTGCCGA 1026
Query 1051 CGTTTTGCGGCGATTACGGTTACTGCGATCGTGGGATGTGCAACGCG-TGTCCTACACCA 1109
|||||||||||||||||||||||||| |||| || |||||| || | || ||||||||
Sbjct 1027 CGTTTTGCGGCGATTACGGTTACTGCAATCGAGGAATGTGCGTCG-GATGCCCTACACCG 1085
Query 1110 AAAGGAT-TACTCGGATGGAGTGATAAATGCGCACCACCTAAAACGACGCAGTTTTGCAG 1168
||||| | | | | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1086 AAAGG-TCTGTTAGCTTGGAGTGATAAATGCGCACCACCTAAAACGACGCAGTTTTGTAG 1144
Query 1169 CGGAGTCAAGGGTAAAACTGTCAATTATTATAAGATAGTCGGTGTTGAGCATTTTACTGG 1228
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1145 CGGAGGCAAGGGTAAAACTGTCAATTATTACAAGATAGTCGGTGTTGAGCATTTTACTGG 1204
Query 1229 GCCTTATGTTAATGATGGACAAGGCCCAACTTCTGTGAACGATTGCAAGGCCAAGTGCGA 1288
|||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1205 GCCTTATGTTAATGGTGGACAAGGCCCAACTTCTGTGAACGATTGCAAGGCTAAATGCGA 1264
Query 1289 TCGTGATTGCAAGTGTTTGGGTTACTTCTACAAAGAGAAAGACAAGAAATGTTTGCTTGC 1348
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1265 TCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGAGAAGGACAAGAAATGTTTGCTTGC 1324
Query 1349 TCCTCTGCTTGGTACACTTATCAAAGATGCCAACACTTCTTCTGTTGCTTACATCAAATA 1408
|||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1325 TCCTCTTCTTGGTACACTTATTAAAGACGCCAACACTTCTTCCATTGCTTACATCAAATA 1384
Query 1409 TTAG 1412
||||
Sbjct 1385 TTAG 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5