BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78850.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927298 jgi|Araly1|927298|scaffold_202859.1 2165 0.0
> Ahg927298 jgi|Araly1|927298|scaffold_202859.1
Length=1366
Score = 2165 bits (1172), Expect = 0.0
Identities = 1304/1368 (95%), Gaps = 8/1368 (1%)
Strand=Plus/Plus
Query 13 CATTAACACACACAAAAACAAAATGAAATTTTCAATCACATTAGCTCTATGCTTCACTCT 72
||| || |||||| | |||||||||||||| ||| ||||||||||||| ||||| || ||
Sbjct 1 CATCAA-ACACAC-ATAACAAAATGAAATTCTCACTCACATTAGCTCTCTGCTTAACCCT 58
Query 73 CTCCATCTTCTTGATC-GGATCACAAGCCAAAGTTCCAGTCGACGACCAATTCCGAGTGG 131
|||||||||||| | | ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 59 CTCCATCTTCTT-AACTGGAGCACAAGCCAAAGTTCCCGTCGACGACCAATTCCGAGTGG 117
Query 132 TCAACGAAGGTGGCTACACCGATTACAGTCCCATCGAATACAACCCCGACGTACGTGGCT 191
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 118 TCAACGAAGGAGGCTACACCGATTACAGTCCAATCGAGTACAACCCCGACGTACGTGGCT 177
Query 192 TCGTACCCTTCAGTGACAACTTCCGTCTCTGTTTCTACAACACAACCCCAAACGCATACA 251
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCGTCCCCTTCAGCGACAACTTCCGTCTCTGTTTCTACAACACAACCCCAAACGCATACA 237
Query 252 CTCTCGCTCTCAGAATCGGAAACAGAGTCCAAGAATCCACTCTCAGATGGGTCTGGGAAG 311
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 238 CTCTCGCTCTTAGAATCGGAAATAGAGCCCAAGAATCCACTCTCAGATGGGTCTGGGAAG 297
Query 312 CAAACAGAGGCTCACCGGTCAAAGAAAACGCGACGTTGACTTTTGGCGAAGACGGAAACC 371
|||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 298 CAAACAGAGGCTCACCGGTCAAAGAAAATGCGACGTTGACTTTCGGTGAAGACGGGAACC 357
Query 372 TCGTACTCGCTGAAGCCGATGGACGCT-TGGTATGGCAAACGAACACAGCTAACAAAGGC 430
|||||||||||||||||||||| || | |||| |||||||||||||| ||||||||||||
Sbjct 358 TCGTACTCGCTGAAGCCGATGGCCG-TGTGGTCTGGCAAACGAACACGGCTAACAAAGGC 416
Query 431 GCCGTGGGGATCAAAATCTTGGAGAATGGCAATATGGTAATATACGATTCCAGTGGAAAA 490
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 GCCGTGGGGATCAAAATCTTGGAGAATGGCAATATGGTAATATACGATTCCAGTGGGAAA 476
Query 491 TTTGTATGGCAGAGCTTTGATTCTCCCACCGACACACTTCTCGTTGGACAGTCTTTGAAA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTGTATGGCAGAGCTTTGATTCTCCCACCGACACACTTCTCGTTGGACAGTCTTTGAAA 536
Query 551 CTCAACGGTCGGACCAAACTCGTAAGCAGACTGTCTCCATCTGTCAACACAAACGGACCG 610
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 537 CTCAACGGTCGGACCAAGCTCGTAAGCAGACTGTCTCCATCGGTCAACACAAACGGACCG 596
Query 611 TACAGTCTCGTGATGGAAGCCAAGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCG 670
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TATAGTCTCGTGATGGAAGCCAAGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCG 656
Query 671 AAACCAATCGCTTATTTTGAATACGAATTCTTCACCAAGATAACACAATTCCAGTCAATG 730
|||||||||||||||| |||||||||||||||||||| ||||| || || ||||| |||
Sbjct 657 AAACCAATCGCTTATTACGAATACGAATTCTTCACCAAAATAACTCAGTTACAGTCTATG 716
Query 731 ACGTTCCAAGCTGTGGAAGATTCCGACACAACGTGGGGTCTAGTCATGGAAGGTGTCGAT 790
||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 717 ACGTTCCAAGCCGTGGAAGATTCGGACACAACGTGGGGTCTACACATGGAAGGTGTCGAT 776
Query 791 TCTGGTTCTAAATTCAACGTTTCAACGTTCCTCTCACGGCCGAAACACAACGCGACGTTG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCTGGTTCTAAATTCAACGTTTCAACGTTCCTCTCACGGCCGAAACACAACGCGACGTTG 836
Query 851 AGTTTTATTCGGTTAGAATCAGACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCG 910
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGTTTTATTCGGTTAGAGTCAGACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCA 896
Query 911 ACTTCCACGGCTTGGGACGTGACATACACGGCGTTTACCAACGCCGACACTGACGGTAAC 970
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 897 ACTTCCACGGCTTGGGACGTGACATACACGGCGTTTACTAACGACGACACTGACGGTAAC 956
Query 971 GACGAGTGTAGGATCCCTGAGCATTGTTTGGGGTTTGGTTTGTGTAAGAAAGGCCAGTGT 1030
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 957 GACGAGTGTAGGATCCCTGAGCATTGTTTGGGTTTTGGTTTGTGTAAGAAAGGTCAGTGT 1016
Query 1031 AACGCTTGTCCTAGCGACAAAGGGCTTCTTGGTTGGGACGAGACATGTAAATCTCCAAGT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1017 AACGCTTGTCCTAGCGACAAAGGGCTTCTTGGTTGGGACGAGACATGTAAAACTCCGAGT 1076
Query 1091 CTCGCAAGTTGCGATCCCAAGACATTTCACTACTTCAAGATCGAAGGAGCTGATAGTTTC 1150
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTCGCAAGTTGCGATCCCAAGACTTTTCACTACTTCAAGATCGAAGGAGCTGATAGTTTC 1136
Query 1151 ATGACAAAATATAACGGTGGATCATCGACGACGGAGAGTGCGTGTGGGGACAAGTGTACG 1210
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1137 ATGACAAAATATAACGGTGGATCATCGACGACTGAGAGTGCGTGTGGGGACAAGTGTACG 1196
Query 1211 AGAGATTGCAAATGTTTAGGGTTTTTCTACAATAGAAAGAGTTCGAGGTGTTGGTTGGGC 1270
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1197 AGAGATTGCAAATGTTTAGGGTTTTTCTACAATAGGAAGAGTTCGAAGTGTTGGTTGGGT 1256
Query 1271 TACGAGCTCAAGACATTGACTAGAACCGGAGATTCTTCCCTGGTTGCTTATGTCAAAGCT 1330
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1257 TACGAGCTCAAGACATTGACTAGAACCGGAGATTCTTCGCTGGTTGCTTATGTCAAAGCT 1316
Query 1331 CCTAATGCAAACAAAAAGT-CAACTCTTTGAGGTCTGAAAGTCatata 1377
|||||||| |||||||||| || ||||||||||| |||||||||||||
Sbjct 1317 CCTAATGCTAACAAAAAGTTCA-CTCTTTGAGGTGTGAAAGTCATATA 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5