BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78870.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927299 jgi|Araly1|927299|scaffold_202860.1 863 0.0
Ahg920595 jgi|Araly1|920595|scaffold_101876.1 601 3e-171
> Ahg927299 jgi|Araly1|927299|scaffold_202860.1
Length=525
Score = 863 bits (467), Expect = 0.0
Identities = 505/523 (97%), Gaps = 3/523 (1%)
Strand=Plus/Plus
Query 87 TCAAAAACCCTAACTCTCTGAGCTCGATCGACAAGTGATAATGGCCAACAGTAATTTGCC 146
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAAAAACCCTAACGCTCTGAGCTCGATCGACAAGTGATAATGGCCAACAGTAATTTGCC 60
Query 147 GCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACCGGCTCCCGGTATAAGTGC 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACCGGCTCCCGGTATAAGTGC 120
Query 207 CTCTCCATCTGAGGATAATATGCGGTATTTCAACGTTATGATTCTTGGTCCTACACAATC 266
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 121 CTCTCCATCTGAGGATAATATGCGGTATTTCAATGTTATGATTCTTGGTCCTTCACAATC 180
Query 267 ACCTTATGAAGGTAGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGAATACCCTAT 326
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCTTATGAAGG-AG-G-AGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGAATACCCTAT 237
Query 327 GGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACATTGACAAGCTTGG 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACATTGACAAGCTTGG 297
Query 387 AAGAATCTGTCTTGATATTCTCAAGGACAAATGGAGCCCTGCACTACAAATACGAACAGT 446
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGAATCTGTCTTGATATTTTGAAGGACAAATGGAGCCCTGCACTACAAATACGAACAGT 357
Query 447 GCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATCCGCTTTCTGAGAA 506
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 GCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATCCGCTGTCTGAGAA 417
Query 507 CATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGATACAGCTAAGGAATGGAC 566
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 418 CATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGAGACAGCCAAAGAATGGAC 477
Query 567 CCGTCTTTATGCAAGCGGCGCATGATAAATTGGAGGGTGAAAA 609
||| ||||| ||||| ||||||| || |||||||||||||||
Sbjct 478 CCGCCTTTACGCAAGTGGCGCATAATGGATTGGAGGGTGAAAA 520
> Ahg920595 jgi|Araly1|920595|scaffold_101876.1
Length=567
Score = 601 bits (325), Expect = 3e-171
Identities = 456/517 (88%), Gaps = 17/517 (3%)
Strand=Plus/Plus
Query 87 TCAAAAACCCTAAC-TCTCTGAG--C--TCG-AT-C-G-A-CAAGTGATAATGGCCAACA 136
|||||||||||||| |||||||| | ||| || | | | | | |||||||||||| |
Sbjct 36 TCAAAAACCCTAACTTCTCTGAGACCGATCGAATCCGGTAGCGTGCGATAATGGCCAATA 95
Query 137 GTAAT-TTGCCGCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACCGGCTCCC 195
||||| || || |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 96 GTAATCTT-CCCCGAAGAATCATCAAGGAAACTCAACGTCTGCTTAGTGAGCCTGCTCCT 154
Query 196 GGTATAAGTGCCTCTCCATCTGAGGATAATATGCGGTATTTCAACGTTATGATTCTTGGT 255
|| |||||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct 155 GGGATAAGTGCGTCTCCATCAGAGGAAAATATGCGATATTTCAATGTTATGATTCTTGGT 214
Query 256 CCTACACAATCACCTTATGAAGGTAGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAA 315
||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 215 CCTACTCAATCTCCTTATGAA-G--GAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAA 271
Query 316 GAATA-CCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACAT 374
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 272 GAATATCCC-ATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATATACCATCCTAACAT 330
Query 375 TGACAAGCTTGGAAGAATCTGTCTTGATATTCTCAAGGACAAATGGAGCCCTGCACTACA 434
|||||||||||||||||||| ||||| || || || ||||| ||||| |||||||||||
Sbjct 331 CGACAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTACA 390
Query 435 AATACGAACAGTGCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATCC 494
|||||| || |||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 391 AATACGTACTGTGCTCTTGAGTATCCAAGCTCTTCTAAGTGCACCAAATCCAGATGATCC 450
Query 495 GCTTTCTGAGAACATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGATACAGC 554
|| ||||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||
Sbjct 451 TCTGTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAAGCAGAAGCTGTGGAAACAGC 510
Query 555 TAAGGAATGGACCCGTCTTTATGCAAGCGGCGCATGA 591
|||||||||||| |||||||| ||||| || || |||
Sbjct 511 TAAGGAATGGACTCGTCTTTACGCAAGTGGTGCTTGA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5