BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78890.1
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477053 jgi|Araly1|477053|fgenesh2_kg.2__2183__AT1G78890.1 1044 0.0
> Ahg477053 jgi|Araly1|477053|fgenesh2_kg.2__2183__AT1G78890.1
Length=766
Score = 1044 bits (565), Expect = 0.0
Identities = 713/780 (91%), Gaps = 28/780 (4%)
Strand=Plus/Plus
Query 37 AATCTCTACAATGGCTCGATCTTTATCTCCTTCACTTTCTCTCTCTCGATACCGTTTCGC 96
|||||||| ||||||||||||||| ||||||||||||||||||| | ||| |||||||||
Sbjct 1 AATCTCTAAAATGGCTCGATCTTTCTCTCCTTCACTTTCTCTCTATAGATGCCGTTTCGC 60
Query 97 CGCAGCTTCTCTTCTTCTCCCTTCATCTCAAACCAT-TTTCATCCGATCTCAATCCTCCA 155
|||||| | || |||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 61 CGCAGC-T-TC-TCTTCTCCCTTCATCTCAAACCATCTTT-TTCCGATCTCAATCCTCGA 116
Query 156 ATCGTCGGTCTAACTCTAACCATCTCGGAGTAATCTACGAGATTGATATCGCTGCGGATC 215
|||| |||||||| | | || |||||| |||||||||||||||||||||||||||||
Sbjct 117 ATCGCCGGTCTAA--C---CGAT-TCGGAGAAATCTACGAGATTGATATCGCTGCGGATC 170
Query 216 CTCTTGTCAATAAGTTGGAAGATGCTGTCCACCGGATTATGGTACGCCGATCCGCACCTG 275
||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 171 CTCTTCTCCATAAGTTGGAAGATGCTGTCCACCGGATAATGGTACGCCGATCCGCACCAG 230
Query 276 ATTGGCTCCCTTTTGTCCCCGGTGCTTCCTTTTGGGTTCCACCTCCTAGATCCCAGTCTC 335
|||||||||||||||| ||||||||||| | |||||||||||| |||||||||||| |||
Sbjct 231 ATTGGCTCCCTTTTGTTCCCGGTGCTTCGTATTGGGTTCCACCGCCTAGATCCCAGACTC 290
Query 336 ATGGGATCGCTAAGCTCGTTGAGAAGCTGGCCAATCCGATCTCTGATGAAGAATCTATTT 395
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 291 ATGGGATCGCTAAGCTCGTTGAGAAGCTGGCCAATCCCATCTCTGATGAAGAATCTATTT 350
Query 396 CAATCTCATCGGTTCGAGGATGGCCTTGCTCTGATTACTTCATCAAAGGTGTAAAGCCTC 455
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 351 CAATCTCATCGGTTCGAGGATGGCCTTGCTCTGATTACTTCATCAAAGGTGTACAGCCTC 410
Query 456 AATCAGTTGAGACGGAGATGACTTCAAATACTGCATATCACTCCGAGGACGAGGAATAAA 515
| ||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||
Sbjct 411 AGTCAGTTGAGACGGAGTTGACTTCAAATACTGCATCTCACTCCGACGACGAGGAATAAA 470
Query 516 CCCCAAAACTC-GTCAGGGCTCTTGCTCTTCAAGATTTGTAGATTTATGAACACGAAT-C 573
||||||||||| ||||||| ||||||||| |||||| ||||||| ||||||||| ||| |
Sbjct 471 CCCCAAAACTCTGTCAGGGTTCTTGCTCTCCAAGATCTGTAGATCTATGAACAC-AATTC 529
Query 574 AACGAAGATTCGA-ATCACCAAGAGCAGCTGCAAAGAC---A--TGGTTTAGACTTTTAG 627
| ||| ||||| | ||||||||||||| |||||||||| | ||||||||||||||||
Sbjct 530 ATCGAGGATTC-ATATCACCAAGAGCAACTGCAAAGACGTGACATGGTTTAGACTTTTAG 588
Query 628 ATAAGGTAGAGTAAAGCAAACCTTTTACAGACTGATCAGATCCTATCC-A----GTCTTA 682
||| |||||||||| |||||||||||||||||||||| |||||||||| | ||||||
Sbjct 589 ATAGGGTAGAGTAA-GCAAACCTTTTACAGACTGATCCGATCCTATCCTATCCAGTCTTA 647
Query 683 GTGAAATTAAATAAGGAAAAGGTGCTGTTGCTTTACCCTCTGTTTTCTTGTAATCTCCCT 742
||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 648 GTGAAATTAAATAAG-AAAAGGTGCTGTGGCTTTGCCCTCTGTTTTCTTGTAATCTTCCT 706
Query 743 TATAACAGTTTGTTGAATCGTGTGTATATATATTTCCGCATAAGCTCGCAGATTCGGTTC 802
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 707 TATAACAGTTTGTTGAATCGTGTGTATATATATATCCGCATAAGCTCGCAGATTCAGTTC 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29621506509
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5