BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G78895.1

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927303 jgi|Araly1|927303|scaffold_202864.1                        898    0.0  


> Ahg927303 jgi|Araly1|927303|scaffold_202864.1
Length=536

 Score =  898 bits (486),  Expect = 0.0
 Identities = 510/522 (98%), Gaps = 0/522 (0%)
 Strand=Plus/Plus

Query  104  GAGAGAGATGGGAGAAATGGGGAAGGCGATGGGATTGCTGATTAGCGGGACGCTTGTGTA  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  15   GAGAGAGATGGGAGAAATGGGGAAGGCGATGGGATTGCTGATTAGCGGGACGCTTGTGTA  74

Query  164  TTACCATTGTGCATATCGTAACGCGActcttctctctctcttctccgatgttttcattgt  223
            |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  75   TTACCACTGTGCATATCGTAACGCAACTATTCTCTCTCTCTTCTCCGATGTTTTCATTGT  134

Query  224  tctcttatgctctctcgccattctcggtctcCTTTTTCGCCAACTCAATGTCTCGGTACC  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  TCTCTTATGCTCTCTCGCCATTCTCGGTCTCCTTTTTCGCCAACTCAATGTCTCGGTACC  194

Query  284  AGTGGATCCACTAGAGTGGCAAATATCACAGGACACAGCAAGTAACATCGTTGCACGCTT  343
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  195  AGTGGATCCACTAGAGTGGCAAATATCACAGGACACAGCAAGTAGCATCGTTGCGCGCTT  254

Query  344  AGCTAATACCGTTGGAGCAGCAGAGGGTGTTCTGAGGGTTGCAGCAACTGGACATGACAA  403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  255  AGCTAATACCGTTGGAGCAGCAGAGGGTGTTCTGAGGGTTGCAGCAACTGGACATGACAA  314

Query  404  GAGACTTTTTGTCAAGGTCGTAATTTGCCTTTACTTCTTATCAGCGCTTGGGCGACTCAT  463
            |||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct  315  GAGACTTTTTGTCAAGGTCGTAATCTGCCTTTACTTCTTATCAGCTCTCGGGCGACTCAT  374

Query  464  ATCAGGTGTAACCGTTGCTTATGCAGGACTATGCTTGTTCTGTCTCTCCATGCTCTGTCA  523
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  375  ATCAGGTGTAACTGTTGCTTATGCAGGACTATGCTTGTTCTGTCTCTCCATGCTCTGTCA  434

Query  524  GACTTCTCAATCTCTTGGAAACTGTGTACTAAAGCGAGGAAATGGCCAGATTTTAGAACA  583
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct  435  GACTTCTCAATCTCTTGGAAACTGTCTACTAAAGCGAGGAAATGGCGAGATTTTAGAACA  494

Query  584  AGAAGCACATTCTGATACATAATATGTCTAGCTTTTGTTTAT  625
            || |||||||||||||||||||||||||||||||||||||||
Sbjct  495  AGCAGCACATTCTGATACATAATATGTCTAGCTTTTGTTTAT  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29621506509


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5