BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78900.1
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477055 jgi|Araly1|477055|fgenesh2_kg.2__2185__AT1G78900.1 3890 0.0
> Ahg477055 jgi|Araly1|477055|fgenesh2_kg.2__2185__AT1G78900.1
Length=2370
Score = 3890 bits (2106), Expect = 0.0
Identities = 2291/2379 (96%), Gaps = 18/2379 (1%)
Strand=Plus/Plus
Query 4 ATCTACGTGCATCCACCTCTCTCTTCTTCTTCTTGTGACCACTCTTCCTGTCTGTTCACT 63
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTACGTGCATCCA-C-CTCTC-TCTTCTTCTTGTGACCACTCTTCCTGTCTGTTCACT 57
Query 64 GGAGGTGAATTTTGAtttttttGGCCGATCGGATTTGAGTTTTTGAATCTCTGATTGCTG 123
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GGAGGTGAATTTTAATTTCTTTGGCCGATCGGATTTGAGTTTTTGAATCTCTGATTGCTG 117
Query 124 AGAAAATGCCGGCGTTTTACGGAGGAAAGCTTACGACCTTCGAGGACGATGAGAAGGAGA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGAAAATGCCGGCGTTTTACGGAGGAAAGCTTACGACCTTCGAGGACGATGAGAAGGAGA 177
Query 184 GCGAGTATGGTTACGTTCGTAAGGTTTCAGGTCCTGTTGTTGTTGCCGATGGTATGGCCG 243
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 178 GCGAGTATGGTTACGTTCGTAAGGTTTCAGGGCCTGTTGTTGTCGCCGATGGTATGGCCG 237
Query 244 GTGCTGCTATGTATGAGTTAGTGCGTGTTGGTCATGATAATTTGATTGGTGAAATCATCC 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 238 GTGCTGCTATGTATGAGTTAGTGCGTGTTGGGCATGATAATTTGATTGGTGAAATCATCC 297
Query 304 GTCTTGAAGGAGATTCTGCCACCATCCAAGTTTACGAGGAAACAGCTGGATTGACAGTTA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTCTTGAAGGAGATTCTGCCACCATCCAAGTTTACGAGGAAACAGCTGGATTGACAGTTA 357
Query 364 ATGATCCCGTTCTTCGAACACACAAGCCACTTTCTGTGGAGCTCGGGCCAGGAATATTGG 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 ATGATCCCGTTCTTCGAACACACAAGCCACTTTCTGTGGAGCTCGGGCCAGGAATACTGG 417
Query 424 GAAATATCTTTGATGGAATTCAGAGGCCTTTGAAGACTATTGCAAGAATATCCGGTGATG 483
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 GAAATATCTTCGATGGAATTCAGAGGCCTTTGAAGACAATTGCAAGAATATCCGGTGATG 477
Query 484 TGTACATTCCTCGGGGTGTGTCTGTTCCAGCTCTTGACAAAGATTGTCTTTGGGAGTTCC 543
||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 478 TGTACATCCCTCGTGGTGTGTCTGTCCCAGCTCTTGACAAAGATTGTCCTTGGGAGTTCC 537
Query 544 AGCCCAATAAATTTGTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTACTGTCT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AGCCCAATAAATTTGTCGAGGGAGACACAATAACTGGTGGTGACTTGTATGCTACTGTCT 597
Query 604 TTGAGAACACTTTGATGAATCACC-TCGTTGCCCTTCCTCCGGATGCCATGGGGAAGATC 662
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 598 TTGAGAACACTTTGATGAATCACCAT-GTTGCCCTTCCTCCTGATGCCATGGGGAAGATC 656
Query 663 ACTTACATTGCTCCAGCTGGTCAATATTCGCTTAAGGATACCGTGATAGAGCTTGAATTC 722
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 657 ACTTACATTGCTCCAGCTGGTCAATATTCCCTTAAGGATACAGTGATAGAGCTTGAGTTC 716
Query 723 CAGGGGATCAAGAAATCTTACACCATGCTTCAGAGCTGGCCTGTACGTACGCCTAGGCCA 782
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAGGGTATCAAGAAATCTTACACCATGCTTCAGAGCTGGCCTGTACGTACGCCTAGGCCA 776
Query 783 GTTGCATCAAAGCTTGCTGCCGATACTCCTCTACTTACGGGGCAGCGTGTTCTTGATGCC 842
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 777 GTTGCATCAAAGCTTGCTGCCGATACTCCTCTACTTACGGGGCAGCGTGTCCTTGATGCC 836
Query 843 CTTTTCCCTTCTGTTCTTGGTGGAACCTGTGCCATTCCTGGTGCTTTTGGCTGTGGGAAA 902
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTTTTCCCTTCGGTTCTTGGTGGAACCTGTGCCATTCCTGGTGCTTTTGGCTGTGGGAAA 896
Query 903 ACTGTTATCAGTCAGGCACTTTCCAAGTACTCCAACTCTGATGCTGTTGTGTATGTTGGT 962
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 ACTGTTATCAGTCAGGCACTTTCCAAGTACTCCAACTCCGATGCTGTTGTGTATGTTGGT 956
Query 963 TGTGGAGAGAGAGGAAATGAAATGGCTGAGGTTCTTATGGACTTCCCACAATTGACAATG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGTGGAGAGAGAGGAAATGAAATGGCTGAGGTTCTTATGGACTTCCCACAATTGACAATG 1016
Query 1023 ACGTTGCCTGATGGCCGTGAGGAATCTGTCATGAAACGTACCACACTTGTTGCTAACACC 1082
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1017 ACATTGCCTGATGGCCGTGAGGAATCTGTCATGAAACGTACTACACTTGTTGCCAACACC 1076
Query 1083 TCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGGAATCACAATCGCTGAA 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCTAACATGCCTGTGGCTGCTCGTGAAGCCTCAATTTACACAGGAATCACAATCGCTGAA 1136
Query 1143 TATTTTAGAGATATGGGCTACAATGTTAGTATGATGGCAGACTCAACTTCCCGTTGGGCA 1202
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TATTTTAGAGATATGGGATACAATGTTAGTATGATGGCAGACTCAACTTCCCGTTGGGCA 1196
Query 1203 GAAGCATTAAGAGAAATTTCAGGACGGCTGGCTGAAATGCCTGCTGACAGTGGATATCCA 1262
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1197 GAAGCATTAAGAGAAATTTCAGGACGGCTGGCTGAAATGCCTGCCGACAGTGGGTATCCC 1256
Query 1263 GCCTATCTAGCAGCACGTTTAGCATCTTTCTATGAACGTGCTGGTAAAGTAAAATGTCTT 1322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GCCTATCTAGCAGCACGTTTAGCATCTTTCTATGAACGTGCTGGTAAAGTAAAATGTCTC 1316
Query 1323 GGTGGACCAGAACGTAACGGAAGTGTTACAATTGTTGGTGCAGTTTCGCCTCCTGGAGGA 1382
||||||||||||||| | |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 1317 GGTGGACCAGAACGTGATGGAAGTGTCACAATTGTTGGTGCTGTTTCACCTCCTGGAGGA 1376
Query 1383 GACTTTTCAGATCCTGTGACTTCAGCAACCCTTAGTATTGTGCAGGTCTTCTGGGGTTTG 1442
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1377 GACTTTTCAGATCCTGTGACTTCGGCAACCCTTAGTATTGTGCAGGTCTTCTGGGGTTTG 1436
Query 1443 GACAAAAAGCTTGCCCAGAGAAAACATTTTCCCTCTGTTAATTGGTTGATTTCTTACTCA 1502
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1437 GACAAAAAGCTTGCCCAGAGAAAACATTTTCCTTCTGTTAATTGGTTGATTTCCTACTCT 1496
Query 1503 AAGTATTCAACGGCACT-GGAATCTTTCTATGAGAAGTTCGATCCAGATTTCATCAACAT 1561
|||||||||||||| || |||| |||||||||| ||||| |||||||||||||||| |||
Sbjct 1497 AAGTATTCAACGGC-CTTGGAAACTTTCTATGAAAAGTTTGATCCAGATTTCATCACCAT 1555
Query 1562 CAGGACAAAGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGCT 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CAGGACAAAGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGCT 1615
Query 1622 TGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAGCTAAGCTATT 1681
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1616 TGTAGGAAAAGATGCGCTAGCAGAAGGTGACAAAATCACCTTGGAAACAGCTAAGCTATT 1675
Query 1682 GAGGGAAGATTACCTTGCTCAAAACGCGTTTACACCATATGACAAATTCTGTCCTTTCTA 1741
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1676 GAGGGAAGACTACCTTGCTCAAAACGCGTTTACACCATATGACAAATACTGCCCTTTCTA 1735
Query 1742 CAAGTCCGTGTGGATGATGCGTAACATTATCCATTTCTACAACCTAGCCAACCAGGCGGT 1801
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 CAAGTCGGTCTGGATGATGCGTAACATTATCCATTTCTACAACCTAGCCAACCAGGCGGT 1795
Query 1802 TGAGAGAGCAGCTGGAATGGACGGTCAAAAGATTACCTACACTCTTATCAAGCATCGCTT 1861
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1796 TGAGAGAGCAGCTGGAATGGACGGTCAAAAGATTACTTACACTCTCATCAAGCATCGCTT 1855
Query 1862 AGGAGATCTTTTCTACCGTTTAGTGTCTCAGAAGTTCGAAGACCCAGCAGAAGGGGAGGA 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1856 GGGAGATCTTTTCTACCGTTTAGTGTCTCAGAAGTTCGAAGACCCAGCAGAAGGTGAGGA 1915
Query 1922 TACACTGGTGGAAAAATTCAAGAAATTGTACGACGATCTCAATGCTGGATTCCGTGCTTT 1981
||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 1916 TACACTGGTGGCAAAATTTAAGAAATTGTATGACGATCTCACTGCTGGATTCCGTGCCTT 1975
Query 1982 GGAAGATGAAACTCGGTAAGCTGTCGAGTCTCCACCGCAAGTaaaaaaaaTCCACAGAAT 2041
||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 1976 GGAGGATGAAACTCGGTAAGCTGTCG-GTCTCCACCGCAAGTCTAAAAA-TCCACAGAAT 2033
Query 2042 TGGGTTGTTTTTGGAGAAAGAGGGTTTCATTCATGGTCTCTTTCTTGTGTTTTTGAACCA 2101
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2034 TGGGTTGTTTTTGGAGAAAGAGGGTTTCATTCATGTTCTCTTTCTTGTGTTTTTGAACCA 2093
Query 2102 ACAACTATCATAGTGGTCGGTATTTTATTTATCGGTTTGGTCGATCGATTGAGTTTTAGC 2161
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 2094 ACAACTATCATAGTGGTCGGTATTTTATTTATCGGTTTGTTTGATCGATTGAGTTATAGC 2153
Query 2162 TCTGTGAGCGTCATGATTCTCCGGCTGTGCTGTGCTGTGTAATATGTTTGATTCGTTGTT 2221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TCTGTGAGCGTCATGATTCTCCGGCTGTGCTGTGCTGTGTAATATGTTTGATTCGTTGTT 2213
Query 2222 TTCATGTTTTT-ATTTCGGTGGTAATAAGGTACAGCCAATGTGAGTCATATATTTGATTT 2280
|| |||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 2214 TTTATGTTTTTTATTTCGATGGTAATAAGGTACAGCCAATGTGGGACATATATTTGATTT 2273
Query 2281 GATGTACCCT--C-TCAATTCAATAAGTTAATT-T-TA-TGTCCAAAAACATATTGGGGA 2334
|||||||||| | ||||||||||||||||||| | || |||||||| | |||||||||
Sbjct 2274 GATGTACCCTATCATCAATTCAATAAGTTAATTATATAATGTCCAAAC-C-TATTGGGGA 2331
Query 2335 TACCGTTATTTTTCTCATAATAAATACCATCATTTTGTA 2373
||| |||||||||||||||||||||||||||||||||||
Sbjct 2332 TACAGTTATTTTTCTCATAATAAATACCATCATTTTGTA 2370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89512075750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5