BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78910.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477057 jgi|Araly1|477057|fgenesh2_kg.2__2187__AT1G78910.1 2414 0.0
> Ahg477057 jgi|Araly1|477057|fgenesh2_kg.2__2187__AT1G78910.1
Length=1482
Score = 2414 bits (1307), Expect = 0.0
Identities = 1427/1485 (96%), Gaps = 7/1485 (0%)
Strand=Plus/Plus
Query 14 CCTAGACACAGAGTCCTCCGGTCTTCTGAT-AA-ACCCCCATGTGGAAGGCCAAGACATG 71
||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 1 CCTAGACACAGAGTCCTCCAGTCTTCTGATAAACACCCCCATGTGGAAGGCCAAGACATG 60
Query 72 CTTCCGTCAGATTTACTTGACCGTACTAA-TACGGCGGTACTCGAGAGTCGCTCCGCCGC 130
|||||||||||||| | || |||| ||| | ||||||||||||||||||||||| ||||
Sbjct 61 CTTCCGTCAGATTTTCCTGGGCGTAGTAACT-CGGCGGTACTCGAGAGTCGCTCCACCGC 119
Query 131 CGTCTTCGGTGATCCGCGTGACAAACAACGTAGCACACCTGGGACCACCGAAGCAAGGAC 190
| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 CATCGTCGGTGCTCCGCGTGACAAACAACATAGCACACCTGGGACCACCGAAGCAAGGAC 179
Query 191 CACTGCCACGTCAGCTGATATCCCTGCCGCCATTTCCCGGTCATCCATTACCTGGCAAAA 250
|| ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 180 CATTGCCACGTCAGCTGATATCCCTGCCGCCATTCCCCGGTTATCCGTTACCTGGCAAAA 239
Query 251 ACGCCGGAGCTGACGGCGACGATGGAGATAGCGGCGGCCACGTCACAGCTATAAGCTGGG 310
||||||||| |||||| ||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 240 ACGCCGGAGTTGACGGAGACGAGGGAGATA---GCGGCCACGTCACAGCCATAAGCTGGG 296
Query 311 TCAAGTACTATTTTGAAGAAATCTATGATAAGGCTATTCAAACTCATTTCACAAAGGGCC 370
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAAGTACTATTTCGAAGAAATCCATGATAAGGCTATTCAAACTCATTTCACAAAGGGCC 356
Query 371 TTGTTCAGATGGAGTTTCGAGGTCGTAGGGATGCTTCAAGAGAGAAAGAAGATGGAGCTA 430
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 TTGTTCAGATGGAGTTTCGAGGTCGTATGGATGCTTCAAGAGAGAAAGAAGATGGAGCTA 416
Query 431 TTCCTATGAGAAAGATTAAGCATAACGAGGTGATGCAAATAGGAGACAAAATCTGGTTGC 490
|||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||
Sbjct 417 TTCCTATGAGAAAGATTAAGCATAACGAAGTAATGGAAATAGGAGATAAAATCTGGTTGC 476
Query 491 CGGTTTCAATCGCTGAGATGAGGATTTCTAAGAGATATGACACCATACCAAGTGGAACCT 550
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 CGGTTTCAATCGCTGAGATGAGGATTTCTAAGAGATATGACACTATACCAAGTGGAACCT 536
Query 551 TGTATCCAAACGCAGACGAAATCGCATATCTTCAAAGGCTTGTCAGGTTCAAGGACTCTG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGTATCCAAACGCAGACGAAATCGCATATCTTCAAAGGCTTGTCAGGTTCAAGGACTCTG 596
Query 611 CTATTATAGTTCTTAATAAGCCACCTAAGCTTCCAGTCAAGGGAAATGTGCCTATACATA 670
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTATTATCGTTCTTAATAAGCCACCTAAGCTTCCAGTCAAGGGAAATGTGCCTATACATA 656
Query 671 ATAGCATGGATGCACTTGCAGCTGCAGCTTTGTCTTTTGGTAACGATGAAGGTCCTAGAT 730
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 ACAGCATTGATGCACTTGCAGCTGCAGCTTTGTCTTTTGGTAAAGATGAAGGTCCTAGAT 716
Query 731 TGGTACATCGTCTTGATAGGGAAACTAGTGGCCTCTTAGTAATGGGTCGAACCAAAGAAA 790
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 717 TGGTACATCGTCTTGATAGGGAAACTAGCGGCCTCTTAGTAATGGGTCGATCCAAAGAAA 776
Query 791 GTATAGATTATCTTCACTCAGTGTTCAGTGACTACAAGGGGAGAAACTCAAGCTGTAAGG 850
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 777 GTATAGATTATCTTCACTCAGTGTTCAGTGATTACAAGGGGAGAAACTCAAGCTGTAAGG 836
Query 851 CTTGGAACAAAGCGTGTGAGGCGATGTATCAGCAATATTGGGCATTGGTGATTGGTTCTC 910
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTTGGAACAAAGCGTGTGAAGCGATGTATCAGCAATATTGGGCATTGGTGATTGGTTCTC 896
Query 911 CAAAGGAAAAAGAAGGACTAATTTCAGCTCCTCTTTCAAAGGTGCTTTTGGACGATGGTA 970
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAAAGGAAAAAGAAGGACGAATTTCAGCTCCTCTTTCAAAGGTGCTTTTGGACGATGGTA 956
Query 971 AAACAGACAGGGTGGTTTTGGCTCAAGGTTCGGGCTTTGAAGCTTCGCAAGATGCAATAA 1030
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 AAACAGACAGGGTGGTTTTGGCTCAAGGTTCGGGCTTTGAAGCTTCGCAAGAAGCAATAA 1016
Query 1031 CAGAGTATAAAGTGTTAGGACCTAAGATCAACGGGTGTTCGTGGGTAGAACTTCGTCCTA 1090
||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1017 CAGAGTATAGAGTGTTAGGACCTATGATCAACGGGTGTTCGTGGTTAGAACTTCGTCCTA 1076
Query 1091 TTACTAGCAGAAAACATCAGCTACGTGTACACTGCGCTGAAGCACTTGGTACTCCAATAG 1150
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTACTAGCAGAAAGCATCAGCTACGTGTACACTGCGCTGAAGCACTTGGTACTCCAATAG 1136
Query 1151 TAGGGGATTACAAGTACGGTTGGTTTGTTCACAAGAGATGGAAACAGATGCCTCAGGTTG 1210
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGGGGATTATAAGTACGGTTGGTTTGTTCACAAGAGATGGAAACAGATGCCTCAGGTTG 1196
Query 1211 ATATCGAACCAACTACTGGGAAACCATATAAACTGCGCAGACCAGAAGGTCTTGATGTCC 1270
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATATCGAACCAACAACTGGGAAACCATATAAACTGCGCAGACCAGAAGGTCTTGATGTCC 1256
Query 1271 AAAAGGGAAGCGTTTTGTCAAAAGTACCTTTGTTACATCTCCATTGCCGGGAAATGGTAC 1330
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1257 AAAAGGGAAGCGTTTTGTCAAAAGTTCCTTTGTTACATCTCCATTGCCGGGAAATGGTAC 1316
Query 1331 TTCCAAACATTGCCAAGTTCCTACATGTCATGAACCAACAGGAAACAGAGCCGCTTCACA 1390
||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 1317 TTCCAAACATTGCCAAGTTTCTCCATGTCTTGAACCAACAGGAAACAGAGCCGCTTCACA 1376
Query 1391 CAGGAATCATTGATAAACCGGATCTCTTGCGGTTTGTAGCTTCAATGCCCAGCCATATGA 1450
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1377 CAGGAATCATTGATAAACCAGATCTCTTGCGGTTTGTAGCTTCAATGCCTAGCCATATGA 1436
Query 1451 AGATCAGTTGGAACTTAATGTCTTCATATTTGGTGTAGCTCTTTT 1495
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1437 AGATCAGTTGGAACTTAATGTCTTCATATTTGGTGTAGCCCTTTT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5