BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78910.1 Length=1587 Score E Sequences producing significant alignments: (Bits) Value Ahg477057 jgi|Araly1|477057|fgenesh2_kg.2__2187__AT1G78910.1 2414 0.0 > Ahg477057 jgi|Araly1|477057|fgenesh2_kg.2__2187__AT1G78910.1 Length=1482 Score = 2414 bits (1307), Expect = 0.0 Identities = 1427/1485 (96%), Gaps = 7/1485 (0%) Strand=Plus/Plus Query 14 CCTAGACACAGAGTCCTCCGGTCTTCTGAT-AA-ACCCCCATGTGGAAGGCCAAGACATG 71 ||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| Sbjct 1 CCTAGACACAGAGTCCTCCAGTCTTCTGATAAACACCCCCATGTGGAAGGCCAAGACATG 60 Query 72 CTTCCGTCAGATTTACTTGACCGTACTAA-TACGGCGGTACTCGAGAGTCGCTCCGCCGC 130 |||||||||||||| | || |||| ||| | ||||||||||||||||||||||| |||| Sbjct 61 CTTCCGTCAGATTTTCCTGGGCGTAGTAACT-CGGCGGTACTCGAGAGTCGCTCCACCGC 119 Query 131 CGTCTTCGGTGATCCGCGTGACAAACAACGTAGCACACCTGGGACCACCGAAGCAAGGAC 190 | || |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 120 CATCGTCGGTGCTCCGCGTGACAAACAACATAGCACACCTGGGACCACCGAAGCAAGGAC 179 Query 191 CACTGCCACGTCAGCTGATATCCCTGCCGCCATTTCCCGGTCATCCATTACCTGGCAAAA 250 || ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| Sbjct 180 CATTGCCACGTCAGCTGATATCCCTGCCGCCATTCCCCGGTTATCCGTTACCTGGCAAAA 239 Query 251 ACGCCGGAGCTGACGGCGACGATGGAGATAGCGGCGGCCACGTCACAGCTATAAGCTGGG 310 ||||||||| |||||| ||||| ||||||| |||||||||||||||| |||||||||| Sbjct 240 ACGCCGGAGTTGACGGAGACGAGGGAGATA---GCGGCCACGTCACAGCCATAAGCTGGG 296 Query 311 TCAAGTACTATTTTGAAGAAATCTATGATAAGGCTATTCAAACTCATTTCACAAAGGGCC 370 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 297 TCAAGTACTATTTCGAAGAAATCCATGATAAGGCTATTCAAACTCATTTCACAAAGGGCC 356 Query 371 TTGTTCAGATGGAGTTTCGAGGTCGTAGGGATGCTTCAAGAGAGAAAGAAGATGGAGCTA 430 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 357 TTGTTCAGATGGAGTTTCGAGGTCGTATGGATGCTTCAAGAGAGAAAGAAGATGGAGCTA 416 Query 431 TTCCTATGAGAAAGATTAAGCATAACGAGGTGATGCAAATAGGAGACAAAATCTGGTTGC 490 |||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||| Sbjct 417 TTCCTATGAGAAAGATTAAGCATAACGAAGTAATGGAAATAGGAGATAAAATCTGGTTGC 476 Query 491 CGGTTTCAATCGCTGAGATGAGGATTTCTAAGAGATATGACACCATACCAAGTGGAACCT 550 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 477 CGGTTTCAATCGCTGAGATGAGGATTTCTAAGAGATATGACACTATACCAAGTGGAACCT 536 Query 551 TGTATCCAAACGCAGACGAAATCGCATATCTTCAAAGGCTTGTCAGGTTCAAGGACTCTG 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 TGTATCCAAACGCAGACGAAATCGCATATCTTCAAAGGCTTGTCAGGTTCAAGGACTCTG 596 Query 611 CTATTATAGTTCTTAATAAGCCACCTAAGCTTCCAGTCAAGGGAAATGTGCCTATACATA 670 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 CTATTATCGTTCTTAATAAGCCACCTAAGCTTCCAGTCAAGGGAAATGTGCCTATACATA 656 Query 671 ATAGCATGGATGCACTTGCAGCTGCAGCTTTGTCTTTTGGTAACGATGAAGGTCCTAGAT 730 | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 657 ACAGCATTGATGCACTTGCAGCTGCAGCTTTGTCTTTTGGTAAAGATGAAGGTCCTAGAT 716 Query 731 TGGTACATCGTCTTGATAGGGAAACTAGTGGCCTCTTAGTAATGGGTCGAACCAAAGAAA 790 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 717 TGGTACATCGTCTTGATAGGGAAACTAGCGGCCTCTTAGTAATGGGTCGATCCAAAGAAA 776 Query 791 GTATAGATTATCTTCACTCAGTGTTCAGTGACTACAAGGGGAGAAACTCAAGCTGTAAGG 850 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 777 GTATAGATTATCTTCACTCAGTGTTCAGTGATTACAAGGGGAGAAACTCAAGCTGTAAGG 836 Query 851 CTTGGAACAAAGCGTGTGAGGCGATGTATCAGCAATATTGGGCATTGGTGATTGGTTCTC 910 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 837 CTTGGAACAAAGCGTGTGAAGCGATGTATCAGCAATATTGGGCATTGGTGATTGGTTCTC 896 Query 911 CAAAGGAAAAAGAAGGACTAATTTCAGCTCCTCTTTCAAAGGTGCTTTTGGACGATGGTA 970 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 897 CAAAGGAAAAAGAAGGACGAATTTCAGCTCCTCTTTCAAAGGTGCTTTTGGACGATGGTA 956 Query 971 AAACAGACAGGGTGGTTTTGGCTCAAGGTTCGGGCTTTGAAGCTTCGCAAGATGCAATAA 1030 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 957 AAACAGACAGGGTGGTTTTGGCTCAAGGTTCGGGCTTTGAAGCTTCGCAAGAAGCAATAA 1016 Query 1031 CAGAGTATAAAGTGTTAGGACCTAAGATCAACGGGTGTTCGTGGGTAGAACTTCGTCCTA 1090 ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1017 CAGAGTATAGAGTGTTAGGACCTATGATCAACGGGTGTTCGTGGTTAGAACTTCGTCCTA 1076 Query 1091 TTACTAGCAGAAAACATCAGCTACGTGTACACTGCGCTGAAGCACTTGGTACTCCAATAG 1150 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1077 TTACTAGCAGAAAGCATCAGCTACGTGTACACTGCGCTGAAGCACTTGGTACTCCAATAG 1136 Query 1151 TAGGGGATTACAAGTACGGTTGGTTTGTTCACAAGAGATGGAAACAGATGCCTCAGGTTG 1210 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TGGGGGATTATAAGTACGGTTGGTTTGTTCACAAGAGATGGAAACAGATGCCTCAGGTTG 1196 Query 1211 ATATCGAACCAACTACTGGGAAACCATATAAACTGCGCAGACCAGAAGGTCTTGATGTCC 1270 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 ATATCGAACCAACAACTGGGAAACCATATAAACTGCGCAGACCAGAAGGTCTTGATGTCC 1256 Query 1271 AAAAGGGAAGCGTTTTGTCAAAAGTACCTTTGTTACATCTCCATTGCCGGGAAATGGTAC 1330 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1257 AAAAGGGAAGCGTTTTGTCAAAAGTTCCTTTGTTACATCTCCATTGCCGGGAAATGGTAC 1316 Query 1331 TTCCAAACATTGCCAAGTTCCTACATGTCATGAACCAACAGGAAACAGAGCCGCTTCACA 1390 ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| Sbjct 1317 TTCCAAACATTGCCAAGTTTCTCCATGTCTTGAACCAACAGGAAACAGAGCCGCTTCACA 1376 Query 1391 CAGGAATCATTGATAAACCGGATCTCTTGCGGTTTGTAGCTTCAATGCCCAGCCATATGA 1450 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1377 CAGGAATCATTGATAAACCAGATCTCTTGCGGTTTGTAGCTTCAATGCCTAGCCATATGA 1436 Query 1451 AGATCAGTTGGAACTTAATGTCTTCATATTTGGTGTAGCTCTTTT 1495 ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1437 AGATCAGTTGGAACTTAATGTCTTCATATTTGGTGTAGCCCTTTT 1481 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59458872445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5