BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78915.3
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316788 jgi|Araly1|316788|fgenesh1_pm.C_scaffold_2001821 1138 0.0
> Ahg316788 jgi|Araly1|316788|fgenesh1_pm.C_scaffold_2001821
Length=1155
Score = 1138 bits (616), Expect = 0.0
Identities = 682/715 (95%), Gaps = 0/715 (0%)
Strand=Plus/Plus
Query 764 TGATAGTCCAACTAAGAACACAACAGTAGTTAAAAATCAAATTTCAGAAGAAGAGAAAGC 823
|||||||||||| |||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 441 TGATAGTCCAACAAAGAACACCACAGTAGTCAAAAATCAGATCTCAGAAGAAGAGAAAGC 500
Query 824 CACGCTTCAGCAAAGGCTCAAAGAGTTTGAAACAACTCTCAATGGCACGCCTCAGGATCA 883
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 501 CACGCTTCAGCAAAGGCTCAAAGAGTTTGAAACAACTCTCAATGGCACTCCTAAGGATCA 560
Query 884 AGCTGCTCTGGAGGGTGCAGCTGTGACACTGACTGAACTAGGAGATTATTCACGGGCTGC 943
||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 561 AGCTGCTCTGGAGGGCGCAGCTGTGACACTGACTGAACTTGGAGAGTATTCCCGGGCTGC 620
Query 944 TGCGTTTCTTGAGAAACTCGCTAAGGAGAGACCAACTGACCCTGATGTATTTCGACTGCT 1003
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGCGTTTCTTGAGAAACTGGCTAAGGAGAGACCAACTGACCCTGATGTATTTCGACTGCT 680
Query 1004 TGGAGAAGTAAATTATGAACTTAACAACTATGAAGGCAGTATCGCTGCATACAAAATTTC 1063
||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 681 CGGAGAAGTAAATTATGAACTTAAGAACTATGAAGGCAGTATTGCTGCATACAGAATTTC 740
Query 1064 TGAAAAGGTTTCTAAAGGGATTGATCTTGAAGTTACACGAGGCCTCATGAATGCGTATTT 1123
||| |||||||||||||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 741 TGATAAGGTTTCTAAAGGGATTGACCTTGAAGTCACACGAGGCCTCATGAACGCATATTT 800
Query 1124 AGCTGCGAAGAAACCAGACGAGGCCGTCAAATTTCTTCTAGACACTCGTGAACGTCTGAA 1183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AGCTGCTAAGAAACCAGACGAGGCCGTCAAATTTCTTCTAGACACTCGTGAACGTCTGAA 860
Query 1184 TACAAAGAAAACAAGCACAACTGACAGTGTTACAGATGAAACAAATCTAGACCCAATTCA 1243
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 861 TACAAAGAAAACAAGCTCAGCAGACAGTGTTACAGATGAAACAAATCTAGACCCAATTCA 920
Query 1244 GGTTGAGTTACTTCTCGGAAAAGCGTATTCAGACTGGGGACATATCAGCGACGCGATAGC 1303
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 921 GGTTGAGTTGCTTCTCGGAAAAGCTTATTCAGACTGGGGACATATCAGCGACGCCATAGC 980
Query 1304 TGTTTATGACCAGTTAATCAGTGCTCATCCTGAAGACTTCCGAGGCTACTTGGCTAAGGG 1363
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 981 TGTTTATGACCAGCTAATCAGTGCTCATCCTGAAGACTTCCGGGGCTACTTGGCTAAGGG 1040
Query 1364 AATTATATTGAGAGAAAATGGAAGCAGAGGAGATGCAGAGAGAATGTTCATCCAGGCGCG 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1041 AATTATATTGAGAGAAAATGGAAGCAGAGGAGATGCAGAGAGAATGTTCATCCAGGCACG 1100
Query 1424 CTTTTTTGCACCAAACAAAGCTAAGGCCCTTGTGGATAGATACTCCAAACTATGA 1478
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1101 CTTTTTTGCACCAGACAAAGCTAAGGCCCTTGTGGATAGATACTCCAAACTGTGA 1155
Score = 682 bits (369), Expect = 0.0
Identities = 417/440 (95%), Gaps = 3/440 (1%)
Strand=Plus/Plus
Query 267 ATGACACTAGC-G--GCGACGACCTCCGTTTCATTTAACTCGAAGCTTCTCCTATTTCGA 323
||||||||||| | ||||||||| |||||||||||||||| ||||||||| | ||| ||
Sbjct 1 ATGACACTAGCGGCAGCGACGACCGCCGTTTCATTTAACTCAAAGCTTCTCGTGTTTAGA 60
Query 324 ATACGTTGCTCGGATTCTAACCCTAAGCGTGGCTTCGGCTCAAAAAAGGAAGAGAAAGAC 383
|| |||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||
Sbjct 61 ATTCGTTGCTCAGATTCTAATCCTAAACGTGGCTTTGGCTCTAAAAAGGAAGAGAAAGAC 120
Query 384 CCGGCATTGCAGCAAAGGAAATCATCTTCTAAACAGTCTGTTTCTGTACCCAGAAAGGCA 443
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CCGGCATTGCAGCAAAGGAAATCATCTTCTAAACAGTCTGTTTCGGTACCCAGAAAGGCA 180
Query 444 CCTGGTCTGAATACTCAGTTTGAAGGAAAATCTGGTCGATCTTTTGATATAGACTTCGAT 503
||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 181 CCTGGTCTGAATACTCAATTTGAAGGAAAATCTGGTCCATCTTTCGATATTGACTTCGAG 240
Query 504 GAACGGCTGGAAAACATCAGAAGGTCAGCTCTTGAGCAGAAAAAGACAGAAGTAGTTAAA 563
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 241 GAACGGCTGGAAAACATCAGAAGGTCAGCTCTTGAGCAGAAAAAGACAGAAGTAATTAGA 300
Query 564 GAATTTGGTCCAATTGACTATGATGCACCAGTCAAGTCTGACCAGAAAACAATTGGTCTT 623
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GAATTTGGTCCAATTGACTATGATGCACCGGTCAAGTCTGACCAGAAAACAATTGGTCTT 360
Query 624 GGTACTAAGGTTGGAGTTGGCATAGCTGTTGTTGTATTTGGTTTGGTTTTTGCTCTTGGT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGTACTAAGGTTGGAGTTGGCATAGCTGTTGTTGTATTTGGTTTGGTTTTTGCTCTTGGT 420
Query 684 GACTTTCTTCCCACGGGAAG 703
||||||||||||||||||||
Sbjct 421 GACTTTCTTCCCACGGGAAG 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56983006520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5