BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78920.1
Length=3093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477059 jgi|Araly1|477059|fgenesh2_kg.2__2189__AT1G78920.2 4802 0.0
Ahg920584 jgi|Araly1|920584|scaffold_101865.1 826 0.0
Ahg924417 jgi|Araly1|924417|scaffold_105698.1 207 3e-52
> Ahg477059 jgi|Araly1|477059|fgenesh2_kg.2__2189__AT1G78920.2
Length=3393
Score = 4802 bits (2600), Expect = 0.0
Identities = 2815/2917 (97%), Gaps = 22/2917 (1%)
Strand=Plus/Plus
Query 19 gtagaaaaattaatttaggaaaaaaatattcggaaagttctgtgaaaaGTCTTCGGATTT 78
|||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1 GTAGCAAAGTTAATTTAGGAAAAAAATATTCCGAAAGTTCTCTGAAAAGTCTTCGGATTT 60
Query 79 AGAACGGAGACAGCGAGAGGATAGAGCGCTTCTTCGGCTACAACAAGCTTTCGCTAATGG 138
|||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 61 AGAACGGAGAGAGAGAGAGGAGAGAGCGCTTCTTCGGCTAGGACAAGCTTTCGCTAATGG 120
Query 139 CGGTTTCCTTCTGATCACTCTCACCGGAGCCGTCATCTTCTCTG-TTTTACCGATTTTTA 197
|| |||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 121 CGCTTTCCTTCTGATCA--CTCACCGGAGCCGTCATCTTCTCTGTTTTTACTGATTTTTA 178
Query 198 GGAAATTTTGATTGTGGTGGAAAC-TTGTTGTGGCAACTCTACTGAGAAAGTTTGAAGAA 256
|| |||| || || | |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 179 GG-AATTGTGTTTATAGTGGGAACTTTGTTGTGGCAACTCTACTGAGAAAGTTTGAAGAA 237
Query 257 GCTGGAATCAAAGATATAGCTAGAGTTAAGAGGGTTCATACTAACTTGTGCTCG-TTTTG 315
||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 238 GCTGGAATC-AAGATATAGCTAGAGTTAAGAGGGTTCATACTAACTTGTGTTCGCTTTT- 295
Query 316 TGATGTGCTGTTGTTAACGTTTGGAGGAAAAAGTTGTAGTGTATTAAAATTCAGCGTCCG 375
||||||| ||||||| ||| || | | |||| || ||||||||||||||
Sbjct 296 CGATGTGC---TGTTAACATTT---GG----A---G-AGTGCATCAAAATTCAGCGTCCT 341
Query 376 AGTTCTGGGGCGGAGTTGCCCCATAGCATTGACTTTACGCCTCTACACATAGTCCGAAGG 435
||||||||||| |||||||||||||||||||| ||||| ||||||| |||||||| ||||
Sbjct 342 AGTTCTGGGGCTGAGTTGCCCCATAGCATTGATTTTACACCTCTACCCATAGTCCCAAGG 401
Query 436 GCTAATTCAGCTCAAAACATGATGATGGATGAAGATGTTGAGCAGGCCAGTTTGATGTCT 495
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 402 GCAAATTCAGCTCAAAACATGATGATGGATGAAGATATTGAGCAGGCCAGTTTGATGTCT 461
Query 496 TTCAATGACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTGATA 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTCAATGACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTGATA 521
Query 556 TTCCGGATTATTAGGAAATTAAATGTCCGTGTCCTTTCGATAATTCTGCTTTTCTGCTTC 615
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TTCCGGATTCTTAGGAAATTAAATGTCCGTGTCCTTTCGATAATTCTGCTTTTCTGCTTT 581
Query 616 GGAGCAATCTTTTACATGGGGGCAAGTACTTCTCCCATCATCGTGTTCGTCTTCACAGTA 675
||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 582 GGAGCGATCTTTTACGTGGGAGCAAGTACTTCTCCCATAATCGTGTTCGTCTTCGCAGTA 641
Query 676 TGCATCATCAGCTTCCTTTTGTCAATATATCTAACCAAGTGGGTTTTAGCGAAAGATGAA 735
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 642 TGCATCATCAGCTTTCTTTTGTCCATATATCTAACCAAGTGGGTTTTAGCGAAAGATGAA 701
Query 736 GGACCTCCAGAGATGGTTGAGATATCAGATGCTATACGTGATGGAGCTGAAGGTTTTTTC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 702 GGACCTCCAGAGATGGTTGAGATATCAGATGCTATACGTGATGGAGCTGAAGGGTTTTTC 761
Query 796 AGAACGCAGTATAGCACTATATCCAAGATGGCCATTTTGCTAGCTTTTGTGATTCTTTGC 855
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 762 AGAACGCAGTATAGCACTATATCCAAGATGGCTGTCTTGCTAGCTTTTGTGATTCTTTGC 821
Query 856 ATATATCTATTCCGTAGCTTAACTCCCCAGCAAGAGGCTGCTGGTTTAGGAAGGGCGATG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ATATATCTATTCCGTAGCTTAACTCCCCAGCAAGAGGCTGCTGGTTTAGGAAGGGCGATG 881
Query 916 TCTGCTTATATTACTGTTGCTGCATTTCTTTTGGGGGCTCTATGCTCAGGTATTGCTGGA 975
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TCTGCCTATATTACTGTTGCTGCATTTCTTTTGGGGGCTCTATGCTCAGGTATTGCTGGA 941
Query 976 TATGTTGGAATGTGGGTGTCAGTTCGTGCTAATGTGCGGGTCTCCAGTGCTGCCAGACGA 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TATGTTGGAATGTGGGTGTCAGTTCGTGCTAATGTGCGGGTCTCCAGTGCTGCCAGACGA 1001
Query 1036 TCTGCGAGAGAAGCATTGCAGATAGCCGTTCGTGCTGGTGGGTTTTCAGCCCTGGTTGTT 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TCTGCGAGAGAAGCATTGCAGATAGCCGTTCGTGCTGGTGGGTTTTCAGCCCTGGTTGTT 1061
Query 1096 GTTGGTATGGCTGTGATTGGTATCGCCATCCTCTATTCTACATTTTATGTGTGGTTGGGC 1155
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1062 GTTGGTATGGCTGTGATTGGTATCGCCATCCTCTATTCTACATTTTATGTTTGGTTGGGC 1121
Query 1156 GTGGGTTCACCAGGCTCAATGAATGTTACTGACCTACCTCTTCTTCTTGTCGGATATGGT 1215
|||| |||||||||||||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct 1122 GTGGATTCACCAGGCTCAATGAATGTTACTGACCTGCCTCTGCTTCTCGTGGGATATGGT 1181
Query 1216 TTTGGTGCTTCGTTTGTTGCCTTATTTGCTCAGTTGGGTGGTGGAATATATACTAAGGGA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TTTGGTGCTTCGTTTGTTGCCTTATTTGCTCAGTTGGGTGGTGGAATATATACTAAGGGA 1241
Query 1276 GCTGATGTTGGGGCAGATCTCGTTGGGAAAGTTGAGCAGGGAATTCCCGAGGATGATCCT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 GCTGATGTTGGGGCAGATCTCGTTGGGAAAGTTGAGCAGGGAATTCCCGAGGATGATCCT 1301
Query 1336 CGAAATCCTGCTGTTATTGCTGATTTGGTTGGAGACAATGTGGGGGACTGTGCTGCTAGA 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CGAAATCCTGCTGTTATTGCTGATTTGGTTGGAGACAATGTGGGGGACTGTGCTGCTAGA 1361
Query 1396 GGTGCTGATTTATTTGAAAGTATAGCTGCAGAAATCATCAGTGCAATGATACTAGGTGGA 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GGTGCTGATTTATTTGAAAGTATAGCTGCAGAAATCATCAGTGCAATGATACTAGGTGGA 1421
Query 1456 ACAATGGCTAAGAAGTGCAAAATTGAAGATCCATCAGGCTTTATCCTTTTTCCTCTAGTT 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 ACAATGGCTAAGAAGTGCAAAATTGAAGATCCATCAGGCTTTATCCTTTTTCCTCTAGTT 1481
Query 1516 GTTCATTCTTTTGACTTGATTATATCCTCAATTGGTATTCTATCAATCAAGGGAACACGT 1575
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1482 GTTCATTCTTTTGACTTGATTATATCATCAATTGGTATTCTATCAATCAAGGGAACACGT 1541
Query 1576 GATGCTAGTGTGAAATCTCCGGTAGAGGATCCAATGGCTGTACTTCAGAAAGGATATTCT 1635
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1542 GATGCCAGTGTGAAATCTCCGGTAGAGGATCCAATGGCTGTACTTCAGAGAGGATATTCT 1601
Query 1636 CTGACAATTATATTAGCTGTTATAACATTTGGCGCGTCGACTCGCTGGCTGCTTTACACT 1695
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1602 CTGACTATTATATTAGCTGTTTTGACATTTGGCGCGTCGACTCGCTGGCTGCTTTACACT 1661
Query 1696 GAACAAGCTCCATCTGCATGGTTCAATTTCGCCCTATGTGGGTTGGTTGGCATCATCACA 1755
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 GAACAGGCTCCATCTGCATGGTTCAATTTCGCCCTATGTGGGTTGGTTGGCATCATCACA 1721
Query 1756 GCCTATATCTTTGTCTGGATATCCAAATATTATACAGACTATAAGCACGAGCCTGTTCGG 1815
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 GCCTATATCTTTGTCTGGATATCCAAATATTATACAGACTATAAGCACGAGCCTGTTCGA 1781
Query 1816 ACGTTGGCTCTTGCTAGCTCGACTGGTCATGGGACTAATATCATTGCTGGAGTAAGCTTG 1875
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1782 ACGTTGGCTCTTGCTAGCTCGACTGGTCATGGGACTAATATCATTGCTGGGGTCAGCTTG 1841
Query 1876 GGCCTGGAATCAACTGCTCTTCCAGTTTTGACTATAAGTGTAGCTATTATTTCTGCGTAT 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 GGCCTGGAATCAACTGCTCTTCCAGTTTTGACTATAAGTGTAGCTATTATTTCTGCGTAT 1901
Query 1936 TGGTTGGGCAATACCTCGGGTCTAGTGGACGAAAATGGTATTCCCACTGGAGGTCTATTT 1995
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1902 TGGCTGGGCAATACCTCGGGACTAGTGGACGAAAATGGCATTCCCACTGGAGGTCTATTT 1961
Query 1996 GGAACAGCCGTTGCTACAATGGGAATGCTAAGCACTGCAGCTTATGTCCTTACTATGGAC 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 GGAACAGCCGTTGCTACAATGGGAATGCTAAGCACTGCAGCTTATGTCCTTACTATGGAC 2021
Query 2056 ATGTTTGGCCCCATAGCTGACAACGCTGGTGGGATTGTCGAGATGAGCCAGCAGCCAGAG 2115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 ATGTTTGGCCCCATAGCTGACAACGCTGGTGGGATTGTCGAGATGAGCCAGCAGCCAGAA 2081
Query 2116 AGTGTCCGTGAGATCACTGATCTTCTTGATGCTGTTGGGAACACCACAAAAGCAACAACG 2175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 AGTGTCCGTGAGATCACTGATCTTCTTGATGCTGTTGGGAACACCACAAAAGCAACAACG 2141
Query 2176 AAAGGGTTTGCCATTGGATCTGCTGCACTTGCATCATTCCTTCTCTTTAGTGCGTATATG 2235
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2142 AAAGGGTTTGCCATTGGATCTGCTGCCCTTGCGTCATTCCTTCTCTTTAGTGCGTATATG 2201
Query 2236 GACGAGGTTTCAGCGTTTGCTAATGTGTCTTTCAAAGAGGTTGATATTGCTATCCCAGAA 2295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2202 GACGAGGTTTCAGCGTTTGCTAATGTGTCTTTCAAAGAGGTTGATATTGCTATCCCAGAA 2261
Query 2296 GTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGC 2355
|||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2262 GTGTTCGTAGGTGGGTTATTGGGTTCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGT 2321
Query 2356 GCGGCAGTTGGTCGAACTGCACAAGAGGTTGTCAACGAAGTAAGAAGGCAATTTATTGAG 2415
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2322 GCGGCAGTTGGTCGAACTGCACAAGAGGTTGTCAACGAAGTAAGAAGACAATTTATTGAG 2381
Query 2416 AGGCCTGGCATAATGGAGTACAAGGAGAAGCCAGATTATAGTCGCTGTGTCGCCATAGTC 2475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2382 AGGCCTGGCATAATGGAGTACAAGGAGAAGCCAGATTATAGTCGCTGTGTCGCCATTGTC 2441
Query 2476 GCATCTGCAGCTTTAAGAGAAATGATAAAGCCAGGAGCTTTAGCTATTGCATCACCCATT 2535
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2442 GCATCTGCAGCTTTAAGGGAAATGATAAAGCCAGGAGCTTTAGCTATTGCATCACCCATT 2501
Query 2536 GTAGTTGGTTTGGTGTTTCGAATCTTGGGTTACTACACAGGACAACCTCTGCTCGGAGCA 2595
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2502 GTAGTTGGTTTGGTTTTTCGGATTTTGGGTTACTACACAGGACAACCTCTGCTCGGAGCA 2561
Query 2596 AAAGTTGTAGCTTCTATGCTCATGTTTGCAACAGTTTGTGGTATCTTAATGGCACTTTTC 2655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2562 AAAGTTGTAGCTTCTATGCTCATGTTTGCAACAGTTTGTGGTATCTTAATGGCACTTTTC 2621
Query 2656 CTAAACACGGCGGGAGGTGCTTGGGACAATGCAAAGAAATACATAGAGACCGGGGCACTT 2715
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2622 CTAAACACGGCGGGAGGTGCTTGGGACAATGCAAAGAAATACATAGAGACTGGGGCACTT 2681
Query 2716 GGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACCGTGGGAGATCCG 2775
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2682 GGGGGGAAAGGAAGTGAAGCCCACAAAGCAGCTGTGACTGGTGATACCGTGGGAGATCCG 2741
Query 2776 TTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCATAAAAATGCTTGCGACTATAACT 2835
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2742 TTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCATAAAAATGCTCGCGACTATAACT 2801
Query 2836 CTCGTCATGGCTCCGGTTTTCCTCTGAAAGTGAACCGTTACTTATCCATCCCGGCTTATT 2895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2802 CTCGTCATGGCTCCGGTTTTCCTCTGAAAGTGAACCGTTACTTATCCATCCCGGCTTATA 2861
Query 2896 TACTCTCTTGCACATATACAAATAGAGAGGGAGAGAG 2932
|||||||||||||||||||||||||||||||||||||
Sbjct 2862 TACTCTCTTGCACATATACAAATAGAGAGGGAGAGAG 2898
> Ahg920584 jgi|Araly1|920584|scaffold_101865.1
Length=1355
Score = 826 bits (447), Expect = 0.0
Identities = 602/679 (89%), Gaps = 2/679 (0%)
Strand=Plus/Plus
Query 1567 GGAACACGTGATGCTAGTGTGAAATCTCCGGTAGAGGATCCAATGGCTGTACTTCAGAAA 1626
||||| || ||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 72 GGAACTCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCAATGGTTGTGCTTCAGAAA 131
Query 1627 GGATATTCTCTGACAATTATATTAGCTGTTATAACATTTGGCGCGTCGACTCGCTGGCTG 1686
|||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 132 GGATATTCGCTGACTATTATATTAGCCGTTTTGACATTTGGCGCGTCGACTCGCTGGCTG 191
Query 1687 CTTTACACTGAACAAGCTCCATCTGCATGGTTCAATTTCGCCCTATGTGGGTTGGTTGGC 1746
|||||||| ||||||||||||||||| ||| | ||||| | | ||||| |||||||||
Sbjct 192 CTTTACACAGAACAAGCTCCATCTGCTTGGGTGAATTTTTTCATGTGTGGCTTGGTTGGC 251
Query 1747 ATCATCACAGCCTATATCTTTGTCTGGATATCCAAATATTATACAGACTATAAGCACGAG 1806
|| |||||||||||| |||||||||||||||||| ||||| ||| ||||||||| | |||
Sbjct 252 ATTATCACAGCCTATGTCTTTGTCTGGATATCCAGATATTCTACTGACTATAAGTATGAG 311
Query 1807 CCTGTTCGGACGTTGGCTCTTGCTAGCTCGACTGGTCATGGGACTAATATCATTGCTGGA 1866
||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 312 CCTGTTCGGACGTTGGCTCTTGCTAGCTCCACTGGTCATGGAACCAATATAATTGCTGGG 371
Query 1867 GTAAGCTTGGGCCTGGAATCAACTGCTCTTCCAGTTTTGACT-ATAAGTGTAGCTATTAT 1925
|| |||||||| ||||| || || |||||||| ||||| | | | |||||||||||| ||
Sbjct 372 GTCAGCTTGGGTCTGGAGTCCACGGCTCTTCCTGTTTT-AGTTACAAGTGTAGCTATCAT 430
Query 1926 TTCTGCGTATTGGTTGGGCAATACCTCGGGTCTAGTGGACGAAAATGGTATTCCCACTGG 1985
|||||| | |||| |||||||||||||||| ||| |||| ||||| || | |||| ||
Sbjct 431 TTCTGCTTTTTGGCTGGGCAATACCTCGGGACTAATGGATGAAAAGGGAAACCCCATTGC 490
Query 1986 AGGTCTATTTGGAACAGCCGTTGCTACAATGGGAATGCTAAGCACTGCAGCTTATGTCCT 2045
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 491 AGGTCTATTTGGAACAGCTGTAGCTACAATGGGAATGCTGAGCACTGCAGCTTATGTTCT 550
Query 2046 TACTATGGACATGTTTGGCCCCATAGCTGACAACGCTGGTGGGATTGTCGAGATGAGCCA 2105
||| |||||||||||||| || |||||||| || || ||||||||||| |||||||||||
Sbjct 551 TACAATGGACATGTTTGGTCCTATAGCTGATAATGCAGGTGGGATTGTTGAGATGAGCCA 610
Query 2106 GCAGCCAGAGAGTGTCCGTGAGATCACTGATCTTCTTGATGCTGTTGGGAACACCACAAA 2165
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 611 GCAGCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCTGTTGGGAATACCACAAA 670
Query 2166 AGCAACAACGAAAGGGTTTGCCATTGGATCTGCTGCACTTGCATCATTCCTTCTCTTTAG 2225
||||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 671 AGCAACAACAAAAGGGTTTGCTATTGGATCTGCAGCCCTTGCATCATTCCTTCTTTTTAG 730
Query 2226 TGCGTATATGGACGAGGTT 2244
||| |||||||| ||||||
Sbjct 731 TGCCTATATGGATGAGGTT 749
Score = 654 bits (354), Expect = 0.0
Identities = 514/593 (87%), Gaps = 4/593 (1%)
Strand=Plus/Plus
Query 2272 GAGGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATT 2331
|||||||||||||| ||||||||||| ||| | ||||| ||||| ||||||||||||||
Sbjct 744 GAGGTTGATATTGCGATCCCAGAAGTCTTCATCGGTGGGTTATTAGGTGCCATGCTTATA 803
Query 2332 TTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTGCACAAGAGGTTGTCAAC 2391
||||| ||||| |||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 804 TTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTCAAT 863
Query 2392 GAAGTAAGAAGGCAATTTATTGAGAGGCCTGGCATAATGGAGTACAAGGAGAAGCCAGAT 2451
||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 864 GAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGGACTACAAGGAGAAGCCAGAT 923
Query 2452 TATAGTCGCTGTGTCGCCATAGTCGCATCTGCAGCTTTAAGAGAAATGATAAAGCCAGGA 2511
||| |||| ||||| ||||| ||||||||| ||||||| || ||||||||||| ||||||
Sbjct 924 TATGGTCGATGTGTTGCCATTGTCGCATCTTCAGCTTTGAGGGAAATGATAAAACCAGGA 983
Query 2512 GCTTTAGCTATTGCATCACCCATTGTAGTTGGTTTGGTGTTTCGAATCTTGGGTTACTAC 2571
||||| ||||| |||||||| || ||||||||| ||||| || |||||||| ||||||
Sbjct 984 GCTTTGGCTATAATATCACCCACTGCAGTTGGTTTTGTGTTCCGGATCTTGGGATACTAC 1043
Query 2572 ACAGGACAACCTCTGCTCGGAGCAAAAGTTGTAGCTTCTATGCTCATGTTTGCAACAGTT 2631
||||||||||||||||| ||||| ||||| |||||| | ||||| ||||||||||| ||
Sbjct 1044 ACAGGACAACCTCTGCTAGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCAACGGTG 1103
Query 2632 TGTGGTATCTTAATGGCACTTTTCCTAAACACGGCGGGAGGTGCTTGGGACAATGCAAAG 2691
||||||||||||||||| |||||| |||| || || ||||||||||||||||||||||||
Sbjct 1104 TGTGGTATCTTAATGGCTCTTTTCTTAAATACAGCAGGAGGTGCTTGGGACAATGCAAAG 1163
Query 2692 AAATACATAGAGACCGGGGCACTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTG 2751
|||||||| ||||| || || || || |||||||||||||| |||| ||||| || ||
Sbjct 1164 AAATACATTGAGACAGGAGCTCTAGGAGGCAAAGGAAGTGATTCTCATAAAGCTGCAGTA 1223
Query 2752 ACTGGTGATACCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTC 2811
||||||||||| |||||||| || |||||||||||||| || || || |||||||| |||
Sbjct 1224 ACTGGTGATACTGTGGGAGACCCTTTCAAGGACACAGCAGGACCGTCGATTCACGTTCTC 1283
Query 2812 ATAAAAATGCTTG-CGACTATAACTCTCGTCATGGCTCCGGT-TTTCCTCTGA 2862
|| |||||| ||| ||||||| || || ||||||||||| | |||| |||||
Sbjct 1284 ATCAAAATG-TTGGCGACTATCACGCTTGTCATGGCTCCAATCTTTC-TCTGA 1334
> Ahg924417 jgi|Araly1|924417|scaffold_105698.1
Length=793
Score = 207 bits (112), Expect = 3e-52
Identities = 166/189 (88%), Gaps = 15/189 (8%)
Strand=Plus/Plus
Query 1010 TGCGGGTCTCCAGTGCTGCCAGACGATCTGCGAGAGAAGCATTGCAGATAGCCGTTCGTG 1069
|||||||||||||||| | | |||||||| ||||||||||||||| |||||||||||
Sbjct 436 TGCGGGTCTCCAGTGCCGTCGGACGATCTTCGAGAGAAGCATTGC----AGCCGTTCGTG 491
Query 1070 CTGGTGGGTTTTCAGCCCTGG-T-T-GTT-G--T--TGGTATGGCTGTGATTGGTATC-G 1120
||||||||||||||| ||||| | | ||| | | |||||||||||||||||||| | |
Sbjct 492 CTGGTGGGTTTTCAG-CCTGGTTGTAGTTGGTATCATGGTATGGCTGTGATTGGTA-CTG 549
Query 1121 CCATCCTCTATTCTACATTTTATGTGTGGTTGGGCGTGGGTTCACCAGGCTCAATGAATG 1180
|||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 550 CCATCCTCTATTTTACATTTTATGTTTGGTTGGGCATGGATTCACCAGGCTCAATGAATG 609
Query 1181 TTACTGACC 1189
|||||||||
Sbjct 610 TTACTGACC 618
Score = 97.1 bits (52), Expect = 7e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 909 GGCGATGTCTGCTTATATTACTGTTGCTGCATTTCTTTTGGGGGCTCTATGCTCA 963
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGCGATGTCTGCCTATATTACTGTTGCTGCATTTCTTTTGGGGGCTCTATGCTCA 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116822781415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5