BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78930.1
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477061 jgi|Araly1|477061|fgenesh2_kg.2__2191__AT1G78930.1 2966 0.0
> Ahg477061 jgi|Araly1|477061|fgenesh2_kg.2__2191__AT1G78930.1
Length=2042
Score = 2966 bits (1606), Expect = 0.0
Identities = 1927/2074 (93%), Gaps = 54/2074 (3%)
Strand=Plus/Plus
Query 14 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGCAGAAGCAAAG 73
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGTAGAAGCAAAG 60
Query 74 TAGCGACCTTTGTCTTCTTCTCCATCGTGTTTGTTTATGGAGCTTTTACATACGTCCTGC 133
|| |||||||||||||||||||| || | |||||||||||||||||||||| ||||||
Sbjct 61 TATCGACCTTTGTCTTCTTCTCCGTC--G--TGTTTATGGAGCTTTTACATACCTCCTGC 116
Query 134 AATTTCGAAACCCTAACCTTGATTTCTCCTCCTTTAAAATCCTGTAACTTTAGTTCCAGC 193
|||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| |
Sbjct 117 TATTTCGAAACCCTAACCTTGATTTCTCCTCCTCTACAATCTTGTAAATTTGGTTCCAAC 176
Query 194 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTGTTTC-CAGCTT---ACCATAGTGGCCG 249
||||||||||||||||||||||||||||||||| || | |||| |||| ||||||||
Sbjct 177 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTG-CTCTCGGCTTACCACCACAGTGGCCG 235
Query 250 CGTCACTGTTTCCGCCTCGTTACAGCACGGAGATTCGAATTTTAGCTCTAATTCTTCGCA 309
|| ||||||| |||||||| |||||||||||| ||||||| ||||||| |||||||||
Sbjct 236 ATTCGCTGTTTCTGCCTCGTTTCAGCACGGAGATACGAATTTGAGCTCTAGTTCTTCGCA 295
Query 310 GACAAAT--C-AGGAAGCGCAGAATTCAATTGCTGGGTTTCTCCGACGAGACACTGGACT 366
||||||| | |||| ||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 296 GACAAATCACGAGGACGCGCAGAATTCAATTGCTGAGTTTCTCCGACGAGACATTGGTCT 355
Query 367 CTCAGAGGCCGATTCAGATTTCATTTCTTCAAATTGTCCTAAA-TACACGCGAATGATCG 425
|||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||| |
Sbjct 356 CTCAGAGGCCGATTCAGATTTCATTTCTGAAAATTGTCC-AAAGTACACGAGAATGATTG 414
Query 426 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGAGA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGTGG 474
Query 486 GAGTTGAGGAGGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 545
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GAATT--GG-GGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 531
Query 546 ATGGTGGCAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTTTGTCTTCTGCTATGTATT 605
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 532 ATGGTGGGAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTCTGTCTTCTGCTATGTATT 591
Query 606 TGGCTCATTACGTCTCCTCTGAATCGCTTCCGATACTTCTCGATAAGGTTAAGTACCTCA 665
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 592 TGGCTCATTACGTCTCCTCTGAATCGCTTCCCATACTTCTCGATAAGGTTAAGTACCTCA 651
Query 666 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTGGTTGGAAAGTATGCAAGACGAA 725
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 652 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTTGTTGGAAAGTATGCACGACGAA 711
Query 726 TGATGCTCTACTTATCCATTCCTATCGATGAAGATGTGCAGCAAACTCTTTCCTTTTTCG 785
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 712 TGATGCTCTACTTATCCATTCCTATTGATGAAGATGTTCAGCAAACTCTTTCCTTTTTCG 771
Query 786 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGCTCTGTAGATGCATCATTTA 845
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGGTCTGTAGATGCATCATTTA 831
Query 846 GATTTTTACTCGAGTCATTCCCTCGGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 905
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 832 GATTTTTAATCGAGTCATTCCCTCAGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 891
Query 906 CTATGGTCGAGTTTCTTGAAAGCATTGGTATTCCGAAATATTGCTTGGGAAAGGTACTTC 965
||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 892 CTATGGTAGAGTTTCTTGAAAGCATTGGTATTCCTAAATATTGCTTGGGAAAGCTACTTC 951
Query 966 TTTTGTACCCTCCCATCATGCTCGGAAAAACTGAGGAGATCAAACGAAGGGTAGCCACAG 1025
||||||||||||| ||| |||| || |||||||||||||||||| ||||||||||| |||
Sbjct 952 TTTTGTACCCTCCTATCTTGCTAGGCAAAACTGAGGAGATCAAAAGAAGGGTAGCCGCAG 1011
Query 1026 CTATGGAGAAGGTAAGTGTAGTGAACAAGGATTCTGGAAAATTGTTGCTGAAGTATCCGT 1085
|| |||||||| | ||||||||| |||||||||| |||||| |||||||||||||||| |
Sbjct 1012 CTCTGGAGAAGCTTAGTGTAGTGGACAAGGATTCGGGAAAAGTGTTGCTGAAGTATCCTT 1071
Query 1086 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGGCTCAtttttttACAGTG 1145
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1072 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGTCTCATATTTTTACAGTG 1131
Query 1146 AATCGGTGCTCAAAATGGATATTGACCACGCCATTAGGAGATGGCCTTTGCTTCTCGGTT 1205
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1132 AATCGGTGCTCAAAATGGATATTGACCACGCAATTAAGAGATGGCCTTTGCTTCTCGGTT 1191
Query 1206 GCTCAGCCAGCAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1265
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCTCAGCGAACAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1251
Query 1266 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1311
Query 1326 TTCTTAAGGTTGTTTGCTTTTTGGAAGATTTGGGGTTTCAAAAAGAAATTGTAGGTCAAA 1385
|||| ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||
Sbjct 1312 TTCTGAAGGTTGTTTGCTTTTTGGAAGATTTGGGATTTCAAAAGGAAATCGTGGGTCAAA 1371
Query 1386 TACTGTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGAGAAAACCCTGCAGAAAAAGC 1445
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1372 TACTTTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGACAAGACCCTGCAGAAAAAGC 1431
Query 1446 TCATCTTTCTCACTCGTTTTGGTGTTTCCACTA-CACATTTTCCCCGAATCATAAAGAAA 1504
||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct 1432 TCATCTTTCTCACACGTTTTGGTGTTTCCACTAGC-CATTTCCCCCGAATCATAAAGAAA 1490
Query 1505 TACCCTGAATTTCT-CATATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1563
||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TACCCGGAATTTCTTC-TATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1549
Query 1564 AATGGAGATTGGGATATCAGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1623
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 AATGGAGATTGGGATATCGGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1609
Query 1624 CTTAGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1683
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CTTGGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1669
Query 1684 GGAGAAGCCGGTAAGAGAGGTAATAGAATACCCAAGGTACTTCAGTTACTCGCTAGAGAA 1743
|||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1670 GGAGAAGCCGCTTAGAGAGGTAATAGAATACCCGAGGTACTTCAGTTACTCGCTGGAGAA 1729
Query 1744 AAGGATAAAACCGCGGTTTAGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1803
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 AAGAATAAAACCGCGGTTTTGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1789
Query 1804 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1849
Query 1864 AACTCACAGTGAAATCTCGTAGTTATATTGTAGGTGAAAAAGTTTCTTAGAGAAAATCAC 1923
|||||||||||||| ||| | | | || | || ||||||| |||||||||||
Sbjct 1850 AACTCACAGTGAAACCTC-T--T-A----GT---T-AA---GTTTCTTTGAGAAAATCAC 1894
Query 1924 ACTATGTAATGAGATTGGTGATATCTCTGAAG-CT-----T-CTTCAGTTTTGTCTGTTT 1976
|||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 1895 ACTATGTAATGAGATTGGTGATATCTCTGAAGACTGAAGCTTCTTCAGTTTTGTCTGTTT 1954
Query 1977 GCATTGTTCATATAACCGCTAGTGTATGTACTTCCAGTG-TTT-GTATACAAATTCCTAA 2034
|| ||||||||| | |||||||||||||| | || ||| ||||||||||||||||
Sbjct 1955 GCGTTGTTCATAG----G-TAGTGTATGTACTTACTGTTCTTTTGTATACAAATTCCTAA 2009
Query 2035 CTTC-TT--ACCaaaaaaaaaTCGGCTGATGTGT 2065
||| || ||||||||||| || ||||||||||
Sbjct 2010 CTTTATTTTACCAAAAAAAA-TCAGCTGATGTGT 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77970731515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5