BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78930.1 Length=2073 Score E Sequences producing significant alignments: (Bits) Value Ahg477061 jgi|Araly1|477061|fgenesh2_kg.2__2191__AT1G78930.1 2966 0.0 > Ahg477061 jgi|Araly1|477061|fgenesh2_kg.2__2191__AT1G78930.1 Length=2042 Score = 2966 bits (1606), Expect = 0.0 Identities = 1927/2074 (93%), Gaps = 54/2074 (3%) Strand=Plus/Plus Query 14 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGCAGAAGCAAAG 73 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 GCTACAGATAAACCCTGCAACAGCTTCTTCTTCTTCCTCTTGATGTGGGTAGAAGCAAAG 60 Query 74 TAGCGACCTTTGTCTTCTTCTCCATCGTGTTTGTTTATGGAGCTTTTACATACGTCCTGC 133 || |||||||||||||||||||| || | |||||||||||||||||||||| |||||| Sbjct 61 TATCGACCTTTGTCTTCTTCTCCGTC--G--TGTTTATGGAGCTTTTACATACCTCCTGC 116 Query 134 AATTTCGAAACCCTAACCTTGATTTCTCCTCCTTTAAAATCCTGTAACTTTAGTTCCAGC 193 |||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| | Sbjct 117 TATTTCGAAACCCTAACCTTGATTTCTCCTCCTCTACAATCTTGTAAATTTGGTTCCAAC 176 Query 194 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTGTTTC-CAGCTT---ACCATAGTGGCCG 249 ||||||||||||||||||||||||||||||||| || | |||| |||| |||||||| Sbjct 177 TCTCTCTTCTTCTCTCCTCGTCGCGTAACCTTG-CTCTCGGCTTACCACCACAGTGGCCG 235 Query 250 CGTCACTGTTTCCGCCTCGTTACAGCACGGAGATTCGAATTTTAGCTCTAATTCTTCGCA 309 || ||||||| |||||||| |||||||||||| ||||||| ||||||| ||||||||| Sbjct 236 ATTCGCTGTTTCTGCCTCGTTTCAGCACGGAGATACGAATTTGAGCTCTAGTTCTTCGCA 295 Query 310 GACAAAT--C-AGGAAGCGCAGAATTCAATTGCTGGGTTTCTCCGACGAGACACTGGACT 366 ||||||| | |||| ||||||||||||||||||| ||||||||||||||||| ||| || Sbjct 296 GACAAATCACGAGGACGCGCAGAATTCAATTGCTGAGTTTCTCCGACGAGACATTGGTCT 355 Query 367 CTCAGAGGCCGATTCAGATTTCATTTCTTCAAATTGTCCTAAA-TACACGCGAATGATCG 425 |||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||| | Sbjct 356 CTCAGAGGCCGATTCAGATTTCATTTCTGAAAATTGTCC-AAAGTACACGAGAATGATTG 414 Query 426 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGAGA 485 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 415 TAGAGGGTGTTAGGGATTTGGAGGAATGGAATTCGTGGAAAGGGAGTGGAGAATCTGTGG 474 Query 486 GAGTTGAGGAGGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 545 || || || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GAATT--GG-GGGTTTAGGGTTTAAGGAGAAAGTGATTTATATGGTGAAACAAAAGGGTG 531 Query 546 ATGGTGGCAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTTTGTCTTCTGCTATGTATT 605 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 532 ATGGTGGGAAAGTTGCCTTTTTGGAGAGTCTTGGTTTGAGTCTGTCTTCTGCTATGTATT 591 Query 606 TGGCTCATTACGTCTCCTCTGAATCGCTTCCGATACTTCTCGATAAGGTTAAGTACCTCA 665 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 592 TGGCTCATTACGTCTCCTCTGAATCGCTTCCCATACTTCTCGATAAGGTTAAGTACCTCA 651 Query 666 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTGGTTGGAAAGTATGCAAGACGAA 725 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 652 AGGAAATATTCTTTTCTGGCAGTGATGAGAAAGGTCTTGTTGGAAAGTATGCACGACGAA 711 Query 726 TGATGCTCTACTTATCCATTCCTATCGATGAAGATGTGCAGCAAACTCTTTCCTTTTTCG 785 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 712 TGATGCTCTACTTATCCATTCCTATTGATGAAGATGTTCAGCAAACTCTTTCCTTTTTCG 771 Query 786 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGCTCTGTAGATGCATCATTTA 845 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 772 AAAAGATTGAAGCAAGGCGTGGAGGCTTGGATATGCTGGGGTCTGTAGATGCATCATTTA 831 Query 846 GATTTTTACTCGAGTCATTCCCTCGGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 905 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 832 GATTTTTAATCGAGTCATTCCCTCAGCTTCTTCTACTTTCAGAAGAAAATGATATGAAGC 891 Query 906 CTATGGTCGAGTTTCTTGAAAGCATTGGTATTCCGAAATATTGCTTGGGAAAGGTACTTC 965 ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 892 CTATGGTAGAGTTTCTTGAAAGCATTGGTATTCCTAAATATTGCTTGGGAAAGCTACTTC 951 Query 966 TTTTGTACCCTCCCATCATGCTCGGAAAAACTGAGGAGATCAAACGAAGGGTAGCCACAG 1025 ||||||||||||| ||| |||| || |||||||||||||||||| ||||||||||| ||| Sbjct 952 TTTTGTACCCTCCTATCTTGCTAGGCAAAACTGAGGAGATCAAAAGAAGGGTAGCCGCAG 1011 Query 1026 CTATGGAGAAGGTAAGTGTAGTGAACAAGGATTCTGGAAAATTGTTGCTGAAGTATCCGT 1085 || |||||||| | ||||||||| |||||||||| |||||| |||||||||||||||| | Sbjct 1012 CTCTGGAGAAGCTTAGTGTAGTGGACAAGGATTCGGGAAAAGTGTTGCTGAAGTATCCTT 1071 Query 1086 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGGCTCAtttttttACAGTG 1145 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1072 GGATTCTCTCACCAAGCATACAAGAGAACTATTCTCACATCGTCTCATATTTTTACAGTG 1131 Query 1146 AATCGGTGCTCAAAATGGATATTGACCACGCCATTAGGAGATGGCCTTTGCTTCTCGGTT 1205 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1132 AATCGGTGCTCAAAATGGATATTGACCACGCAATTAAGAGATGGCCTTTGCTTCTCGGTT 1191 Query 1206 GCTCAGCCAGCAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1265 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1192 GCTCAGCGAACAATATGGAGATGATGGTGAAGGAATTTGATAAATTAGGTGTTAGAGATA 1251 Query 1266 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 AAAGAATGGGGAAGGTTATACCCAAGATGCCTCAGCTTTTGTTATGTAAACCCCAAGAAT 1311 Query 1326 TTCTTAAGGTTGTTTGCTTTTTGGAAGATTTGGGGTTTCAAAAAGAAATTGTAGGTCAAA 1385 |||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 1312 TTCTGAAGGTTGTTTGCTTTTTGGAAGATTTGGGATTTCAAAAGGAAATCGTGGGTCAAA 1371 Query 1386 TACTGTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGAGAAAACCCTGCAGAAAAAGC 1445 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1372 TACTTTGTCGATGTCCTGAAATATTTGGCTGCAGCATTGACAAGACCCTGCAGAAAAAGC 1431 Query 1446 TCATCTTTCTCACTCGTTTTGGTGTTTCCACTA-CACATTTTCCCCGAATCATAAAGAAA 1504 ||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||| Sbjct 1432 TCATCTTTCTCACACGTTTTGGTGTTTCCACTAGC-CATTTCCCCCGAATCATAAAGAAA 1490 Query 1505 TACCCTGAATTTCT-CATATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1563 ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1491 TACCCGGAATTTCTTC-TATACGACGCAGACAAAACAGTACTTCCACGGCTAAAGTACTT 1549 Query 1564 AATGGAGATTGGGATATCAGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1623 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1550 AATGGAGATTGGGATATCGGAGAGAGAGATTGCCTTCATGATTCGCAAATTCTCACCGAT 1609 Query 1624 CTTAGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1683 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1610 CTTGGGATATAGCATCGACAAAGTGTTGAGACCGAAGTTTGAATTTCTGGTGAACAGCAT 1669 Query 1684 GGAGAAGCCGGTAAGAGAGGTAATAGAATACCCAAGGTACTTCAGTTACTCGCTAGAGAA 1743 |||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1670 GGAGAAGCCGCTTAGAGAGGTAATAGAATACCCGAGGTACTTCAGTTACTCGCTGGAGAA 1729 Query 1744 AAGGATAAAACCGCGGTTTAGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1803 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1730 AAGAATAAAACCGCGGTTTTGGGTACTCAAAGGGAGGAACATAGAATGTACATTACAGGA 1789 Query 1804 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1790 AATGTTAGGCAAAAACGATGAAGAGTTTGCTGCTGATTTCTTGGGTTTAGGAGAGCTTCA 1849 Query 1864 AACTCACAGTGAAATCTCGTAGTTATATTGTAGGTGAAAAAGTTTCTTAGAGAAAATCAC 1923 |||||||||||||| ||| | | | || | || ||||||| ||||||||||| Sbjct 1850 AACTCACAGTGAAACCTC-T--T-A----GT---T-AA---GTTTCTTTGAGAAAATCAC 1894 Query 1924 ACTATGTAATGAGATTGGTGATATCTCTGAAG-CT-----T-CTTCAGTTTTGTCTGTTT 1976 |||||||||||||||||||||||||||||||| || | |||||||||||||||||| Sbjct 1895 ACTATGTAATGAGATTGGTGATATCTCTGAAGACTGAAGCTTCTTCAGTTTTGTCTGTTT 1954 Query 1977 GCATTGTTCATATAACCGCTAGTGTATGTACTTCCAGTG-TTT-GTATACAAATTCCTAA 2034 || ||||||||| | |||||||||||||| | || ||| |||||||||||||||| Sbjct 1955 GCGTTGTTCATAG----G-TAGTGTATGTACTTACTGTTCTTTTGTATACAAATTCCTAA 2009 Query 2035 CTTC-TT--ACCaaaaaaaaaTCGGCTGATGTGT 2065 ||| || ||||||||||| || |||||||||| Sbjct 2010 CTTTATTTTACCAAAAAAAA-TCAGCTGATGTGT 2042 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77970731515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5