BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78940.2
Length=2473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909524 jgi|Araly1|909524|Al_scaffold_0002_2605 3576 0.0
Ahg312649 jgi|Araly1|312649|fgenesh1_pm.C_scaffold_1001429 1295 0.0
> Ahg909524 jgi|Araly1|909524|Al_scaffold_0002_2605
Length=2259
Score = 3576 bits (1936), Expect = 0.0
Identities = 2129/2223 (96%), Gaps = 10/2223 (0%)
Strand=Plus/Plus
Query 177 ATGTGGCTACCAAAAGCAAATGGGGCAAAGAAAGAAACAGGAAGTGGTTCAGTAGCAGTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGCTACCAAAAGCAAATGGGGCAAAGAAAGAAACAGGAAGTGGTTCAGTAGCAGTT 60
Query 237 GCAATAGACAAAGACAAAGGAAGCCAACATGCTCTTAAATGGACAATCGACAATCTTGCT 296
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 GCAATAGACAAAGACAAAGGAAGCCAGCATGCTCTGAAATGGACAATCGACAATCTTGCT 120
Query 297 TCTCGTGGCCAAACCATTTCTCTTATTCATGTCCTCTGCAGATCTCATTCTTCTTCAGAT 356
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 121 TCTCGTGGCCAAACCATTTCTCTTATTCATGTCCTCTCCAGATCCCATTCTTCTTCAGAT 180
Query 357 CTTGAAGAAGGAACGCCACAACAGAAACAGCAAAT-GGAGAAGATAGCTAAAGATCTCTT 415
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 181 CTTGAAGAAGGAACGCCACAACAGAGACAGC-AATCGGAGAAGATAGCTAAAGATCTCTT 239
Query 416 TGTATCCTTCCACTGCTATTGTTCCCGTAAAGAGATAAATTGTCGAGACATTTTGCTGGA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTATCCTTCCACTGCTATTGTTCCCGTAAAGAGATAAATTGTCGAGACATTTTGCTGGA 299
Query 476 AGACGCAGACAAAGTTCGAGCCATTACCGAATATGTTTCATCTTCTGCAATTGAGAACTT 535
|||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 300 AGACGCAGACAAAGTTAGAGCCATAACCGAATATGTTTCATCTTCCGCAATCGAGAACTT 359
Query 536 AGTCGTTGGATCTGCATCACGTAATGGCTTCATGAGAAGATTCAAGACGGATTTGCCAAC 595
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 AGTCGTTGGATCTGCATCGCGTAACGGCTTCATGAGAAGATTCAAGACGGATTTGCCAAC 419
Query 596 AACAGTGTCAAAATCAGCTCCAGATTTCTGCAATGTTTATGTCATTTCAAAAGGCAAAAT 655
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACTGTGTCAAAATCAGCTCCAGATTTCTGCAATGTTTATGTCATTTCAAAAGGCAAAAT 479
Query 656 TGCTTCAGTACGAAATGCATCACGTCCTGCTCCTTACCAAAATTCGATGCAGCAATGTGA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TGCTTCAGTACGAAATGCATCACGTCCTGCTCCTTACCAAAATTCGATGCAGCATTGTGA 539
Query 716 AATTGACAATCATCACCCACATACTCCTGACAAAGCACCAAAGTACCATGACCATCCCAA 775
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 540 AATTGACAATCATCACCCACATACTCCTGACAAAGCACCAAAGCATCATGACCATTCCAA 599
Query 776 TTCTGCAGGTAGTACACCATCTAGACCGCGCAAATCAGTTGAAGCAGA---T---AGATC 829
|||||||||||||||||| ||||||||||| ||||||||||||| ||| | |||||
Sbjct 600 TTCTGCAGGTAGTACACCGTCTAGACCGCGTAAATCAGTTGAAGTAGATGCTACAAGATC 659
Query 830 GCCGTTGGTGAAAAGGAAGCCATATGGGGACTTCTATGATTCAGATAGTGACCTTTCGTT 889
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 660 GCCCTTGGTGAAAAGGAAGCCATATGGGGACTTATATGATTCAGATAGCGACCTTTCGTT 719
Query 890 TATCAGTCCGTCTTCTCATCGTGACTCTGACATTTCCTTCATCAGCTCAGGAAGACCAAG 949
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 720 CATTAGTCCGTCTTCTCATCGTGACTCTGACATTTCATTCATCAGCTCAGGGAGACCGAG 779
Query 950 CGTTGAGCGGTCTTCCTTTAGCCTTGATTTTCCTGAATCTGCAAGGACTTCAAGAATGTC 1009
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGTTGAGCGCTCTTCCTTTAGCCTTGATTTTCCTGAATCTGCAAGGACTTCAAGAATGTC 839
Query 1010 AACGAGCTCAGAGCAAAGCATTGGCTCAAATCGTTTGGGAATTAAGTTCAGTGATCCTGA 1069
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 840 AACGAGCTCAGAGCAAAGCATTGGCTCTCATCGCTTGGGAATTAAGTTCAGTGATCCTGG 899
Query 1070 TTTCCTTAACGAATCCTCTACATTCTCTGAAGAGAGTGGTAGAACATCCTCCTATTCATC 1129
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 TTTCCCTAACGAATCCTCTACATTCTCTGAAGAGAGCGGTAGAACATCCTCCTATTCATC 959
Query 1130 TCAGAGCTTGGATGATGTTGAAGCTGAAATGAAGAGGCTGCGTCTAGAGCTGAAACAAAC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TCAGAGCTTGGATGATGTTGAAGCTGAAATGAAGAGGCTGCGTCTAGAGCTCAAACAAAC 1019
Query 1190 CATGGATATGTATAGCACAGCTTGTAAAGAAGCTTTAAGCGCTAGACAACAGGCAACGGA 1249
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1020 CATGGATATGTATAGCACAGCTTGCAAAGAAGCTTTAAGCGCTAGACAACAGGCAACCGA 1079
Query 1250 GCTGCAAAAGCTGAGAACCGAAGAGGAGAGACGGTTGGAAGAAGCAAAAAGTTCAGAGGA 1309
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 GCTTCAAAAGCTGAGAACCGAAGAGGAGAGACGGTTGGAAGAAGCAAAGAGTTCAGAGGA 1139
Query 1310 AGCAGCAATGTCAATAGTGGAAAAGGAGAGAGCTAAAGCCAAAGCAGCGTTGGAAGCTGC 1369
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 AGCAGCAATGTCAATAGTGGAAAAGGAGAGAGCTAAAGCCAAAGCAGCCTTGGAAGCTGC 1199
Query 1370 TGAAGCTGCAAAGAGATTAGCAGAAGTGGAATCTAAAAGAAGGTTGACTGCAGAGATGAA 1429
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 TGAAGCTGCTAAGAGATTAGCAGAAGTGGAAGCTAAAAGAAGGTTGACTGCAGAGATGAA 1259
Query 1430 GACAATGAAGGAATCAGATTCATTCTCTCGCGGATTTGTTCGGTATAGGAAATACACGGT 1489
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1260 GACACTGAAGGAATCAGATTCATTCTCTCGCAGATTTGTTCGGTATAGGAAATACACGGT 1319
Query 1490 TGACGAAATCGAAGAAGCTACTTCAAATTTTGCAGAGTCTCAAAAGGTAGGAGAAGGAGG 1549
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGAAGAAATCGAAGAAGCTACTTCAAATTTTGCAGAGTCTCAAAAGGTAGGAGAAGGAGG 1379
Query 1550 CTATGGTCCTGTCTTTAGAGGCTTTCTTGATCACACAAGTGTTGCTGTTAAAGTTCTACG 1609
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CTATGGACCTGTGTTTAGAGGCTTTCTTGATCACACAAGTGTTGCTGTTAAAGTTCTACG 1439
Query 1610 CCCAGACGCAGCTCAAGGGAGATCACAGTTTCAGAAAGAGGTTGAAGTGTTAAGCTGCAT 1669
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1440 CCCAGACGCAGCTCAAGGGAGATCACAGTTTCAGAAAGAGGTTGAAGTATTAAGCTGCAT 1499
Query 1670 AAGGCATCCAAACATGGTGCTTCTTCTTGGAGCTTGTCCAGAATTTGGGATTCTTGTTTA 1729
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAGGCATCCAAACATGGTGCTCCTTCTTGGAGCTTGTCCAGAATTTGGGATTCTTGTTTA 1559
Query 1730 TGAATACATGGCCAAAGGAAGTTTAGAAGACCGGCTTTTCATGCGAGGAAACACACCGCC 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGAATACATGGCCAAAGGAAGTTTAGAAGACCGGCTTTTCATGCGAGGAAACACACCGCC 1619
Query 1790 GATTACCTGGCAGCTACGTTTCAGAATCGCTGCTGAGATCGCCACGGGACTCCTCTTCCT 1849
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1620 AATTACCTGGCAGCTACGTTTCAGAATTGCTGCTGAGATCGCCACGGGACTCCTCTTCCT 1679
Query 1850 CCACCAGACCAAACCTGAACCAATTGTCCACAGAGACCTTAAACCAGGAAATGTTCTGCT 1909
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1680 CCACCAGACCAAACCTGAACCAATTGTCCACAGAGACCTTAAACCAGGAAATGTGCTCCT 1739
Query 1910 CGATTACAACTATGTGAGCAAGATCAGTGATGTCGGGCTAGCGAGATTAGTCCCTGCAGT 1969
|||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1740 TGATTACAATTATGTGAGCAAGATCAGCGATGTTGGGCTAGCAAGATTAGTCCCTGCAGT 1799
Query 1970 AGCGGAAAACGTTACACAGTACAGAGTCACTTCAGCTGCAGGAACTTTCTGTTACATTGA 2029
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 AGCAGAGAACGTTACACAGTACAGAGTCACTTCAGCTGCAGGAACTTTCTGTTACATTGA 1859
Query 2030 TCCTGAGTACCAACAAACAGGAATGTTGGGTGTGAAGTCAGATGTTTATTCTCTTGGAAT 2089
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 1860 TCCTGAGTACCAACAAACCGGAATGTTGGGTGTGAAGTCAGATGTTTATTCGCTCGGGAT 1919
Query 2090 CATGCTTTTGCAGATCTTAACCGCAAAACAGCCAATGGGTTTGGCTTATTACGTTGAACA 2149
|||||||| || ||||| || || ||||| ||||||||||| |||||||||||||| ||
Sbjct 1920 AATGCTTTTACAAATCTTGACTGCGAAACAACCAATGGGTTTAGCTTATTACGTTGAGCA 1979
Query 2150 AGCGATCGAAGAAGGGACTCTTAAGGATATGCTTGATCCAGCAGTACCGGACTGGCCTAT 2209
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 AGCGATCGAAGAGGGGACTCTTAAGGATATGCTTGATCCAGCAGTACCGGACTGGCCTAT 2039
Query 2210 AGAAGAAGCTCTATCTTTAGC-AAAGCTTTCGCTTCAATGCGCGGAACTAAGAAGAAAAG 2268
||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||
Sbjct 2040 GGAAGAAGCTCTGTCTTTAGCTAAA-CTTTCGCTTCAATGCGCGGAATTAAGAAGAAAAG 2098
Query 2269 ATAGACCTGACCTCGGGAAAGAGATATTGCCTGAGCTCAATCGGTTAAGAGAGATAGGTG 2328
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2099 ATAGACCTGATCTCGGGAAAGAGATATTACCTGAGCTCAATCGGTTAAGAGAGATCGGTG 2158
Query 2329 AAGAGAGTTTAGAGAGTGTGTTTTATGCAGGAAATCAAGGAAAGTCTCCAAACACTAGCC 2388
||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 2159 AAGAGAGTTTAGAGAGTGTGTTTTATGCAGGAAGTCAAGGAAAGTCCCCGCACACTAGCC 2218
Query 2389 AAG 2391
|||
Sbjct 2219 AAG 2221
> Ahg312649 jgi|Araly1|312649|fgenesh1_pm.C_scaffold_1001429
Length=2274
Score = 1295 bits (701), Expect = 0.0
Identities = 1238/1492 (83%), Gaps = 58/1492 (4%)
Strand=Plus/Plus
Query 901 CTTCTCATCGTGACTCTGACATTTCCTTCATCAGCTCAGGAAGACCAAGCGTTGAGCGGT 960
||||||| | || || ||| |||||||||||||||| || || || || || || || |
Sbjct 725 CTTCTCAACAAGAATCCGACCTTTCCTTCATCAGCTCCGGGAGGCCGAGTGTAGACCGAT 784
Query 961 CTTCCTTTAGCCT-TGATTTTCCTGAATCTGCAAGGACTTCAAGAATGTCAACGAGCTCA 1019
||||||| | ||| ||||| || ||||| ||||| || |||||||||||||||||||||
Sbjct 785 CTTCCTTCA-CCTACGATTTACCAGAATCAGCAAGAACCTCAAGAATGTCAACGAGCTCA 843
Query 1020 GAGCAAAGCATTGGCTCAAATCGTTTGGGAATTAAGTTCA-GTGATCCTGA-TT-TCCTT 1076
||||| |||||||| ||| || | || ||||| ||||| | | ||| ||| || | ||
Sbjct 844 GAGCAGAGCATTGGGTCACATAGATTAGGAATCAAGTTTACG-GAT-TTGAGTTAT-CTC 900
Query 1077 AACGAATCCTCTAC-ATTCTCTGAAGAGAGTGGTAGAACATC---CTCCTATTCATCTCA 1132
|| | || ||||| || ||||| |||||||| ||||| || ||||||||||| ||
Sbjct 901 AATGGTTCTTCTACGGTT-TCTGATGAGAGTGGAAGAACTTCTTGTTCCTATTCATCACA 959
Query 1133 GAGCTTGGATGATGTTGAAGCTGAAATGAAGAGGCTGCGTCTAGAGCTGAAACAAACCAT 1192
||||||||||||||| |||||| |||||| ||| |||||| |||||||||||||||| ||
Sbjct 960 GAGCTTGGATGATGTAGAAGCTCAAATGAGGAGACTGCGTTTAGAGCTGAAACAAACTAT 1019
Query 1193 GGATATGTATAGCACAGCTTGTAAAGAAGCTTTAAGCGCTAGACAAC-AGGCAACGGAGC 1251
|||||||||||| ||||||| | ||||||||||| ||| || | || |||| || ||||
Sbjct 1020 GGATATGTATAGTTCAGCTTGCAGAGAAGCTTTAACCGCAAGGC-ACGAGGCGACAGAGC 1078
Query 1252 TGCAAAAGCTGAGAACCGAAGAGGAGAGACGGTTGGAAGAAGCAAAAAG-T-TCAGAGGA 1309
||||||||||||| || |||||||| ||||| ||||| ||| | |||| | |||||||
Sbjct 1079 TGCAAAAGCTGAGGACAGAAGAGGAAAGACGATTGGAGGAA-C-TAAAGATGACAGAGGA 1136
Query 1310 AGCAGCAATGTCAATAGTGGAAAAGGAGAGAGCTAAAGCCAAAGCAGCGTTGGAAGCTGC 1369
| |||||||||||| || ||||| |||||||| ||||||||| |||| |||||||||||
Sbjct 1137 AATAGCAATGTCAATGGTTGAAAACGAGAGAGCAAAAGCCAAAACAGCCTTGGAAGCTGC 1196
Query 1370 TGAAGCTGCAAAGA-GATTAGCAGAAGTGGAATCTAAA-A-GAAGGTTGACTGCAGAGAT 1426
|||||||||||| | | || || ||||||||| | ||| | || ||| || ||||||||
Sbjct 1197 TGAAGCTGCAAACAGGCTT-GCTGAAGTGGAAGC-AAAGAGGAGGGTACAC-GCAGAGAT 1253
Query 1427 GAAGACAATG-AAGGAATCAGATTCATTCTCTCG-C---GGATTTGTTCGGTATAGGAAA 1481
|||| | || ||| || | ||||| |||||||| | | | ||||||| ||||| |||
Sbjct 1254 GAAGGTATTGAAAGAAAGC-GATTCTTTCTCTCGACATAGCA-TTGTTCGATATAGAAAA 1311
Query 1482 TACACGGTTGACGAAATCGAAGAAGCTACTTCAAATTTTGCAGAGTCTCA-AAAGGTAGG 1540
||||| ||| | || |||||||||| ||| | || || ||||| || | ||| || ||
Sbjct 1312 TACACTGTTCAAGAGATCGAAGAAGGTACAGCGAACTTCGCAGAATC-AAGAAAAGTTGG 1370
Query 1541 AGAAGGAGGCTATGGTCCTGTCTTTAGAGGCT-TTCTTGATCACACAAGTGTTGCTGTTA 1599
||||||||| ||||| ||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1371 AGAAGGAGGGTATGGGCCTGTGTTTAGAGG-TCATCTTGATCACACAAGTGTTGCTGTTA 1429
Query 1600 AAGTTCTACGCCCAGACGCAGCTCAAGGGAGATCACAGTTTCAGAAAGAGGTTGAAGTGT 1659
| ||| ||||||| ||||| |||||||| |||||||||||||| ||||||||||| || |
Sbjct 1430 AGGTTTTACGCCCTGACGCTGCTCAAGGAAGATCACAGTTTCACAAAGAGGTTGAGGTAT 1489
Query 1660 TAAGCTGCATAAGGCATCCAAACATGGTGCTTCTTCTT-GGAGCTTGTCCAGAATTTGGG 1718
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 1490 TAAGCTGCATAAGGCATCCAAACATGGTGCTTCT-CTTAGGAGCTTGTCCAGAATACGGT 1548
Query 1719 ATTCTTGTTTATGAATACATGGCCAAAGGAAGTTTAGAAGACCGGCTTTTCATG-CGAGG 1777
||||| || || |||||||||||||||||||| ||||| ||||| ||||||| | || ||
Sbjct 1549 ATTCTCGTCTACGAATACATGGCCAAAGGAAGCTTAGATGACCGCCTTTTCA-GACGCGG 1607
Query 1778 AAACACACCGCCGATTACCTGGCAGCTACGTTTCAGAATCGCTGCTGAGATCGCCACGGG 1837
|||||| || |||||| | ||||| | ||||||||||| |||||||||||||| |||||
Sbjct 1608 AAACACGCCCCCGATTTCATGGCAATTGCGTTTCAGAATAGCTGCTGAGATCGCTACGGG 1667
Query 1838 ACTCCTCTTCCTCCACCAGACCAAACCTGAACCAATTGTCCACAGAGACCTTAAA-CCAG 1896
|||||||| ||||||||||||||||| ||||||||||||||||||||| || || ||||
Sbjct 1668 TCTCCTCTTTCTCCACCAGACCAAACCAGAACCAATTGTCCACAGAGAC-TTGAAGCCAG 1726
Query 1897 GAAATGTTCTGCTCGATTACAACTATGTGAGCAAGATCAGTGATGTCGGGCTAGCGAGAT 1956
|||| ||||| ||||| |||| || || ||||||||||| ||||||||||| || |||
Sbjct 1727 GAAACGTTCTTCTCGACCACAATTACGTCAGCAAGATCAGCGATGTCGGGCTTGCAAGAC 1786
Query 1957 TAGTCCCTGCAGTAGCGGAAAACGTTACACAGTACAGAGTCACTTCAGCTGCAGGAACTT 2016
| |||||||| ||||| |||||||| || ||||||||||| || |||||||||||||| |
Sbjct 1787 TCGTCCCTGCGGTAGCTGAAAACGTGACTCAGTACAGAGTAACATCAGCTGCAGGAACGT 1846
Query 2017 TCTGTTACATTGATCCTGAGTACCAACAAACAGGAATGTTGGGTGTGAAGTCAGATGTTT 2076
|||||||||| || || ||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1847 TCTGTTACATCGACCCAGAGTATCAACAAACCGGAATGTTGGGTGTGAAATCAGATGTTT 1906
Query 2077 ATTCTCTTGGAATCATGCTTTTGCAGATCTTAACCGCAAAACAGCCAATGGGTTTGGCTT 2136
||||||| |||||||||||||||||| | || || || |||||||| |||||||||||||
Sbjct 1907 ATTCTCTCGGAATCATGCTTTTGCAGCTTTTGACGGCGAAACAGCCGATGGGTTTGGCTT 1966
Query 2137 ATTACGTTGAACAAGCGATCGAAGAAGGGACTCTT-AAGGATATGCTTGATCCAGCAGTA 2195
|||| || ||||||||||| ||||||||||| || || |||||||||||||| ||||||
Sbjct 1967 ATTATGTGGAACAAGCGATAGAAGAAGGGACA-TTGAAAGATATGCTTGATCCTGCAGTA 2025
Query 2196 CCGGACTGGCCTAT-AGAAGAAGCTCTATCT-TTAGCAAAGCTT-TCGCTTCAATGCGCG 2252
||||| ||||| || ||| |||||| | ||| || || ||| || ||||| ||||| ||
Sbjct 2026 CCGGATTGGCC-ATTAGAGGAAGCTTTGTCTCTT-GCGAAG-TTATCGCTACAATGTGCT 2082
Query 2253 GAACTAAGAAGAAAAGATAGACCTGACCTCGGGAAAGA-GAT-ATTGCCTGAGCTCAATC 2310
|| | |||||||||||||| ||||| || || ||||| | | || ||||||||| |||
Sbjct 2083 GAGTTGAGAAGAAAAGATAGGCCTGATCTTGGTAAAGAAG-TGAT-GCCTGAGCTTAATA 2140
Query 2311 GG-TTAAGAGAGATAGGTGAAGAGAGT-TTAGAGAGTGTGTTTTATGCAGGA 2360
| ||| ||||||| |||||||||||| || ||| |||||||||||| |||
Sbjct 2141 GACTTA-GAGAGATTGGTGAAGAGAGTCTT-GAGTCTGTGTTTTATGCTGGA 2190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93206829515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5