BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78955.1
Length=2310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316793 jgi|Araly1|316793|fgenesh1_pm.C_scaffold_2001826 3753 0.0
Ahg477065 jgi|Araly1|477065|fgenesh2_kg.2__2195__AT1G78970.2 1003 0.0
> Ahg316793 jgi|Araly1|316793|fgenesh1_pm.C_scaffold_2001826
Length=4671
Score = 3753 bits (2032), Expect = 0.0
Identities = 2220/2312 (96%), Gaps = 8/2312 (0%)
Strand=Plus/Plus
Query 1 ATGTGGAAGTTGAAGATAGCAAATGGAAACAAAGAAGAGCCCTACTTGTTCAGTACCAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTGGAAGTTGAAGATAGCAAATGGAAACAAAGAAGAGCCCTACTTGTTCAGCACCAAC 60
Query 61 AACTTCCTCGGAAGACAGACATGGGAGTTTGATCCGGACGCCGGCACAGTGGAGGAACTA 120
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 AACTTCCTCGGAAGACAGACATGGGAGTTTGATCCGGACGCCGGCATAGCAGAGGAACTA 120
Query 121 GCTGCCGTCGAAGAAGCTCGTCGGAAAT-TTTATGATGATCGTTTTC-GTGTTAAAGCTA 178
|||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||
Sbjct 121 GCTGCCGTCGAAGAAGCTCGTCGGAAATATTT-TGATGATCGTTTTCAG-GTTAAAGCTA 178
Query 179 GCAGCGATCTCATATGGCGTATGCAGTTTTTAAAGGAGAAGAAATTCGAGCAAGTTATAC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCAGCGATCTCATATGGCGTATGCAGTTTTTAAAGGAGAAGAAATTCGAGCAAGTTATAC 238
Query 239 CTCCGGCGAAGGTTGAAGATGCCAATAATATCACGAGCGAAATAGCTACAAATGCGTTAA 298
|||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 239 CTCCGGTGAAGGTTGAAGATGCCAACAAGATCACGAGCGAAATAGCTACAAATGCGTTAA 298
Query 299 GGAAAGGGGTTAATTTCTTATCAGCATTGCAGGCCAGTGATGGCCATTGGCCTGCTGAAA 358
||| |||||| ||||||||||| ||||||||||||| |||||| || |||||||||||||
Sbjct 299 GGAGAGGGGTCAATTTCTTATCGGCATTGCAGGCCACTGATGGACACTGGCCTGCTGAAA 358
Query 359 ATGCTGGTCCTTTATTCTTCCTTCCTCCATTGGTTTTCTGTCTATACGTCACTGGACATC 418
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 ATGCTGGTCCTTTATTCTTCCTTCCTCCATTGGTTTTCTGTCTATTTGTCACTGGACATC 418
Query 419 TCCATGAGATTTTCACTCAAGACCATCGTCGAGAGGTCCTTAGATACATCTACTGTCACC 478
|||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 419 TCCATGAGATATTCACTCAAGAGCATCGTCGAGAGATCCTCAGATACATCTACTGTCACC 478
Query 479 AGAATGAAGATGGTGGGTGGGGATTACACATAGAAGGAAACAGCACCATGTTCTGCACCA 538
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 AGAATGAAGATGGTGGCTGGGGATTACACATAGAAGGAGACAGCACCATGTTCTGCACCA 538
Query 539 CACTAAACTACATTTGCATGCGCATACTTGGAGAAGGTCCAAATGGAGGACCAGGAAACG 598
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 539 CACTAAACTACATTTGCATGCGCATACTTGGAGAATCTCCTTTTGGAGGACCAGGAAACG 598
Query 599 CGTGCAAACGGGCCAGGGATTGGATTCTTGACCATGGTGGTGCAACATACATACCTTCTT 658
|||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 599 CGTGCAGACAGGCCAGGGATTGGATTCTTGACCATGGGGGTGCAACATACATACCCTCTT 658
Query 659 GGGGCAAAACTTGGCTTTCGATACTTGGTGTCTTTGATTGGTCAGGAAGCAACCCCATGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGGGCAAAACTTGGCTTTCGATACTTGGTGTCTTTGATTGGTCAGGAAGCAACCCCATGC 718
Query 719 CTCCAGAGTTTTGGATCCTACCTTCCTTTCTTCCAATACATCCAGCGAAAATGTGGTGTT 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 CTCCAGAGTTTTGGATCCTACCTTCGTTTCTTCCAATACATCCAGCGAAAATGTGGTGTT 778
Query 779 ACTGCCGGTTGGTTTACATGCCAATGTCTTATCTTTACGGGAAGAGATTCGTTGGTCCAA 838
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 ACTGCCGGTTGGTTTACATGCCAATGTCTTATCTTTACGGGAAGAGATTTGTTGGTCCAA 838
Query 839 TAAGTCCTCTTATTCTGCAACTACGCGAAGAAATTTACTTGCAGCCTTATGCGAAAATAA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 TAAGTCCTCTTATTCTGCAACTACGCGAAGAAATTTACTTGCAGCCTTATGCAAAAATAA 898
Query 899 ACTGGAATAGAGCTCGCCATCTATGTGCAAAGGAAGATGCGTACTGTCCTCATCCACAAA 958
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 ACTGGAACAGAGCACGCCATCTATGTGCAAAGGAAGACGCGTACTGTCCTCATCCACAAA 958
Query 959 TTCAAGATGTTATATGGAACTGCCTTTACATCTTCACCGAACCGTTTCTTGCATGTTGGC 1018
||||||||||||||||| |||| |||||||||||||| || ||||||||| |||||||||
Sbjct 959 TTCAAGATGTTATATGGGACTGTCTTTACATCTTCACTGAGCCGTTTCTTACATGTTGGC 1018
Query 1019 CATTTAACAAGCTGCTAAGGGAAAAAGCTCTTGGGGTGGCAATGAAACACATACATTATG 1078
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATTTAATAAGCTGCTTAGGGAAAAAGCTCTTGGGGTGGCAATGAAACACATACATTATG 1078
Query 1079 AAGACGAAAATAGCCGTTATATTACCATTGGATGTGTTGAAAAGGCATTATGCATGCTTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGACGAAAATAGCCGTTATATTACCATTGGATGTGTTGAAAAGGCATTATGCATGCTTG 1138
Query 1139 CGTGTTGGGTTGAAGACCCTAACGGAATTCATTTCAAAAAGCATCTTTTGAGGATTTCTG 1198
| ||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1139 CCTGTTGGGTTGAGGATCCTAACGGAAGTCATTTCAAGAAGCATCTTTTGAGGATTTCTG 1198
Query 1199 ATTACTTGTGGATTGCAGAAGATGGGATGAAAATGCAGAGCTTTGGAAGTCAATTATGGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATTACTTGTGGATTGCAGAAGATGGGATGAAAATGCAGAGCTTTGGAAGTCAATTATGGG 1258
Query 1259 ATTCGGGGTTTGCCCTCCAAGCGTTAGTTGCAAGTAATCTCGTGAACGAAATCCCAGATG 1318
|||| || ||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1259 ATTCAGGATTTGCCCTCCAAGCGTTAGTTGCAAGTGATCTCGCGAACGAAATCCCAGATG 1318
Query 1319 TACTCAGGAGAGGATATGACTTTTTGAAAAATTCTCAGGTTAGAGAGAACCCTTCGGGTG 1378
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1319 TACTCAGGAGAGGATATGACTTTTTAAAAAATTCTCAGGTTAGGGAGAACCCTTCGGGTG 1378
Query 1379 ACTTTACAAACATGTACCGTCACATATCCAAAGGGTCGTGGACTTTCTCTGATCGAGATC 1438
||||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1379 ACTTTACGAACATGTTCCGTCACATCTCTAAAGGGTCGTGGACTTTCTCTGATCGAGACC 1438
Query 1439 ATGGATGGCAAGCTTCCGACTGCACAGCCGAA-AGTTTCAAGTGTTGCCTGTTGCTTTCA 1497
|||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 1439 ATGGATGGCAAGCTTCCGACTGCACAGCCGAAGGGTTT-AAGTGTTGCCTTTTGCTTTCG 1497
Query 1498 ATGATACCACCTGACATTGTTGGCCCGAAAATGGATCCCGAACAGTTATATGAGGCTGTT 1557
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ATGATGCCACCTGACATTGTTGGCCCGAAAATGGATCCCGAACAGTTATATGAGGCTGTT 1557
Query 1558 ACTATCTTACTGTCTCTACAGAGTAAAAATGGAGGTGTAACTGCTTGGGAGCCTGCCCGT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ACTATCTTACTGTCTCTACAGAGTAAAAATGGAGGTGTAACTGCTTGGGAGCCTGCCCGT 1617
Query 1618 GGACAAGAATGGTTGGAATTGCTAAACCCTACTGAAGTTTTTGCTGACATTGTGGTTGAG 1677
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1618 GGACAAGAATGGTTGGAATTGCTAAATCCTACTGAAGTTTTTGCTGACATTGTGGTTGAG 1677
Query 1678 CACGAGTACAATGAGTGTACTTCATCAGCGATCCAAGCTTTGATTCTTTTCAAGCAACTA 1737
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1678 CACGAGTACAATGAGTGTACTTCATCAGCAATCCAAGCTTTGATTCTGTTCAAGCAACTA 1737
Query 1738 TATCCGAATCACAGGACAGAAGAGATCAACACTTCCATCAAGAAAGCCGTGCAATACATA 1797
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TATCCGAATCACCGGACAGAAGAGATCAACACTTCCATCAAGAAAGCCGTGCAATACATA 1797
Query 1798 GAGAGCATACAAATGCTTGATGGTTCATGGTACGGAAGCTGGGGAGTTTGCTTCACATAC 1857
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GAGAGCATACAAATGCATGATGGTTCATGGTACGGAAGCTGGGGAGTTTGCTTCACATAC 1857
Query 1858 AGTACATGGTTTGGTCTGGGAGGCCTTGCAGCTGCTGGAAAGACATACAACAACTGCTTG 1917
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1858 AGTACATGGTTTGGTCTGGGAGGCCTCGCAGCTGCTGGAAAGACGTACAACAACTGTTTG 1917
Query 1918 GCTATGCGTAAAGGCGTTCATTTCCTTCTCACAACTCAAAAAGATAATGGAGGTTGGGGT 1977
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1918 GCTATGCGTAAAGGCGTTCATTTCCTTCTCACAACTCAAAAAGATAATGGGGGTTGGGGT 1977
Query 1978 GAAAGCTACTTGTCATGTCCTAAAAAGAGATACATTCCAAGTGAAGGAGAGCGGTCAAAC 2037
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1978 GAAAGCTACTTGTCATGTCCTAAAAAGAGATACATTCCAAGTGAAGGGGAGAGATCAAAC 2037
Query 2038 TTGGTGCAAACCTCTTGGGCAATGATGGGTTTACTTCATGCTGGACAGGCCGAGCGAGAT 2097
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 2038 TTGGTGCAAACCTCTTGGGCAATGATGGGTCTACTTCATGCTGGACAGGCAGAGCGAGAT 2097
Query 2098 CCGTCTCCTCTTCACCGTGCTGCAAAGCTCTTAATCAACTCTCAACTGGAGAATGGCGAT 2157
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CCGGCTCCTCTTCACCGTGCTGCAAAGCTCTTAATCAACTCTCAACTGGAGAATGGCGAT 2157
Query 2158 TTTCCTCAGCAGGAGATAACTGGAGCTTTCATGAAGAACTGCTTGTTACACTACGCAGCA 2217
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 2158 TTTCCCCAGCAGGAGATAACTGGAGCTTTCATGAAGAACTGCTTGTTACACTATGCAGAA 2217
Query 2218 TACAGAAACATCTTCCCCGTGTGGGCACTCGCAGAGTATAGGAGACGAGTTCCTTTGCCG 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2218 TACAGAAACATCTTCCCCGTGTGGGCACTCGCAGAGTATAGGAGACGAGTTCCATTGCCA 2277
Query 2278 TATGAAAAACCTTCAACAGAGAGAAGAAGTTA 2309
|||||||| |||| |||||||||||||| |||
Sbjct 2278 TATGAAAA-CCTTGAACAGAGAGAAGAA-TTA 2307
Score = 1151 bits (623), Expect = 0.0
Identities = 1213/1494 (81%), Gaps = 56/1494 (4%)
Strand=Plus/Plus
Query 1 ATGTGGAAGTTGAAGATAGCA-AATGGAAACAAAGAAGAGCCCTACTTGTTCAGTACCAA 59
||||||| ||||||||||| | || || | | ||| || |||||||| |||| ||| ||
Sbjct 2320 ATGTGGAGGTTGAAGATAGGAGAA-GGCAGCGGAGATGATCCCTACTTATTCACTACTAA 2378
Query 60 CAACTTCCTCGGAAGACAGACATGGGAGTTTGATCCGGACGCCGGCACAG-TGGAGG-AA 117
||||||| ||||| |||| ||||||||||||||||| ||||| ||| | | ||||| ||
Sbjct 2379 CAACTTCGTCGGACGACAAACATGGGAGTTTGATCCTGACGCAGGCTC-GCCGGAGGAAA 2437
Query 118 -CTAGCTGCCGTCGAAGAAGCTCGTCGGAAATTT-TATGATGATCGTTTTCGTGTTAAAG 175
|| | ||||||| || ||||| | | | ||| || || | ||||||| ||||||||
Sbjct 2438 GATA-C-GCCGTCGTTGAGGCTCGCCAG-AGTTTCTACGACAACCGTTTTCATGTTAAAG 2494
Query 176 CTAGCAGCGATCTCATATGGCGTATGCAGTTTTTAAAGGAGAAGAAATTCGAGCAAGTTA 235
| |||||||||||| | ||||| ||||||||||| |||||||| ||||| |||||||| |
Sbjct 2495 CAAGCAGCGATCTCTTGTGGCGCATGCAGTTTTTGAAGGAGAAAAAATTTGAGCAAGTGA 2554
Query 236 TACCTCCGGCGAAGGTTGAA-GATGCCAATAATATCACGAGCGAAATAGCTACAAATGCG 294
|| |||||| ||| |||||| | | || | || | || ||||| || || |||||
Sbjct 2555 TAGCTCCGGTGAAAGTTGAAGGCT-CCGAGAAGGTAACCTTCGAAACGGCGACGAATGCA 2613
Query 295 TTAAGGAAAGGGGTTAATTTCTTATCAGCATTGCAGGCCAGTGATGGCCATTGGCCTGCT 354
||| ||| ||| ||| ||||||| || || ||||||||||| || || || ||||| ||
Sbjct 2614 TTACGGAGAGGTGTTCATTTCTTCTCGGCGTTGCAGGCCAGCGACGGTCACTGGCCAGCC 2673
Query 355 GAAAATGCTGGTCCTTTATTCTTCCTTCCTCCATTGGT-TTTCTGTCTATACGTCACTGG 413
|||||||| || ||||| || |||||||| ||| |||| ||| ||||| ||| |||| ||
Sbjct 2674 GAAAATGCCGGCCCTTTGTTTTTCCTTCCGCCACTGGTGTTT-TGTCTTTACATCACGGG 2732
Query 414 ACATCTCCATG-AGATTTTCACTCAAGACCATCGTCGAGAGGTCCTTAGATACATCTACT 472
|||||| ||| || | |||||| ||| ||||| |||| | ||| ||||||||||||
Sbjct 2733 ACATCTTGATGAAG-TATTCACTTTAGAACATCGAAAAGAGATTCTTCGATACATCTACT 2791
Query 473 GTCACCAGAATGAAGATGGTGGGTGGGGATTACACATAGAAGGAAACAGCACCATGTTCT 532
|||| ||||| |||||||||||||||||||||||||| ||||| | ||||| |||||||
Sbjct 2792 GTCATCAGAAGGAAGATGGTGGGTGGGGATTACACATTGAAGGTCATAGCACAATGTTCT 2851
Query 533 GCACCACACTAAACTACATTTGCATGCGCATACTTGGAGAAGGTCCAAATGGAGGACCA- 591
| || | | || ||||| || ||||| |||||||||||| |||| |||||| ||
Sbjct 2852 GTACTGCGTTGAATTACATATGTATGCGTATACTTGGAGAAAGTCCTGTTGGAGG-TCAT 2910
Query 592 GGAAACGCGTGCAAACGGGCCAGGGATTGGATTCTTGA-CCATGGTGGTG-CAACATACA 649
| ||| ||||| | ||| ||| |||| ||||| ||| | |||||||||| | || ||||
Sbjct 2911 GAAAATGCGTGTAGACGAGCCCGGGAATGGATCCTT-AGTCATGGTGGTGTC-ACCTACA 2968
Query 650 TACCTTCTTGGGGCAAAACTTGGCTTTCGATACTTGGTGTCTTTGATTGGTCAGGAAGCA 709
||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 2969 TACCTTCTTGGGGTAAAACTTGGCTTTCGATACTTGGTGTGTTTGACTGGTCTGGAAGCA 3028
Query 710 ACCCCATGCCTCCAGAGTTTTGGATCCTACCTTCCTTTC-TTCCAATACATCCAGCGAAA 768
|||| |||||||| ||||||||||||||||||| ||||| |||| | |||||||| |||
Sbjct 3029 ACCCAATGCCTCCTGAGTTTTGGATCCTACCTT-CTTTCTTTCCCGTGCATCCAGCAAAA 3087
Query 769 ATGTGGTGTTACTGCCGGTTGGTTTACATGCCAATGTCTTATCTTTACGGGAAGAGATTC 828
|||||||| ||||||||| |||||||| |||||||||| ||||| ||||||||| | ||
Sbjct 3088 ATGTGGTGCTACTGCCGGATGGTTTACTTGCCAATGTCGTATCTCTACGGGAAGCGGTTT 3147
Query 829 GTTGGTCCAATAA-GTCCTCTTATTCTGCAACTACGCG-AAGAAATTTACTTGCAGCCTT 886
|| || ||||||| || |||| ||| ||||||| || | ||||| | ||||| |||||||
Sbjct 3148 GTCGGCCCAATAACGT-CTCTGATTTTGCAACTGCG-GAAAGAACTCTACTTACAGCCTT 3205
Query 887 ATGCGA-AAATAAACTGGAAT-AGAGCT-CGCCATCTATGTGCAAAGGAAGATGCGTACT 943
||| | |||| || ||| || | || | |||||||| ||||||||||||||| | ||||
Sbjct 3206 ATG-AAGAAATCAATTGG-ATGAAAG-TCCGCCATCTTTGTGCAAAGGAAGATACATACT 3262
Query 944 GTCCTCATCCACAAATTCAAGATGTT-ATATGGAACTGCCTTTACATCTTCACCGAACCG 1002
||| | ||||| ||||||| ||| |||||| || | |||||||||||| | || ||
Sbjct 3263 ATCCCCGTCCACTGGTTCAAGA-GTTAATATGGGACAGTCTTTACATCTTCGCGGAGCC- 3320
Query 1003 TTT-CTTGCATGTTGGCCATTTAACAAGCTGCTAAGGGAAAAAGCTCTTGGGGTGGCAAT 1061
||| |||| | ||||||||||||||||| | || ||| |||| |||||| |||| ||||
Sbjct 3321 TTTCCTTGGACGTTGGCCATTTAACAAGTTTCTTAGGCAAAAGGCTCTTCAGGTGACAAT 3380
Query 1062 GAAACACATACATTATGAAGACGAAAATAGCCGTTATATTACCATTGGATGTGTTGAAAA 1121
||| |||||||| |||||||| |||||||| |||||||| |||||||| ||||| |||||
Sbjct 3381 GAAGCACATACACTATGAAGATGAAAATAGTCGTTATATCACCATTGGGTGTGTGGAAAA 3440
Query 1122 GGCATTATGCATGCTT-GCGTGTTGGGTTGAAGACCCTAA-CGGAATTCATTTCAAAAAG 1179
|| | |||||||| || || ||||||||||||||||| || |||||| ||||||| |||
Sbjct 3441 GGTACTATGCATG-TTAGCTTGTTGGGTTGAAGACCCGAATGGGAATT-ATTTCAAGAAG 3498
Query 1180 CATCTT-TTGAGGATTTCTGATTACTTGTGGATTGCAGAAGATGGGATGAAAATGCAGAG 1238
|| ||| | || || || |||||||||||| | || |||||||||||||||||||||||
Sbjct 3499 CACCTTGCT-AGAATCTCCGATTACTTGTGGGTGGCCGAAGATGGGATGAAAATGCAGAG 3557
Query 1239 CTTTGGAAGTCAATTATGGGATTCGGGGTTTGCCCTCCAAGCGTTAGTTGCAAGTAATCT 1298
||||||||||||| |||||||| | || ||||| || ||||| ||| ||||||| |||||
Sbjct 3558 CTTTGGAAGTCAACTATGGGATACAGGATTTGCGCTGCAAGCTTTACTTGCAAGCAATCT 3617
Query 1299 CGTGAAC-GAAATCCCAGATGTACTCAGGAGAGGATATGACTTTTTGAAAA-ATTCTCAG 1356
| | | |||||| | |||||||||||||||||| |||| || | |||| |||| |||
Sbjct 3618 C-TCCAGTGAAATCTCTGATGTACTCAGGAGAGGACATGAGTTCAT-AAAAGATTCACAG 3675
Query 1357 GTTAGAGAGAACCCTTCGGGTGACTTTACA-AA-CATGTACCGTCACATATCCAAAGG-G 1413
||| ||||||||||||| ||||| ||| || || |||||||||||| ||||| ||||| |
Sbjct 3676 GTTGGAGAGAACCCTTCAGGTGA-TTT-CAGAAGCATGTACCGTCATATATCTAAAGGCG 3733
Query 1414 TCGTGGAC-TTTCTCTGATCGAGATCATGGATGGCAAGCTTCCGACTGCACAGC 1466
||||||| ||| ||||| |||||||| || ||||||| ||| |||||||||||
Sbjct 3734 -CGTGGACCTTT-TCTGACCGAGATCACGGCTGGCAAGTTTCAGACTGCACAGC 3785
> Ahg477065 jgi|Araly1|477065|fgenesh2_kg.2__2195__AT1G78970.2
Length=2356
Score = 1003 bits (543), Expect = 0.0
Identities = 1759/2326 (76%), Gaps = 163/2326 (7%)
Strand=Plus/Plus
Query 1 ATGTGGAAGTTGAAGATAGCAAATGGAAACAAAGAAGAGCC-CTACTTGTTCAGTACCAA 59
||||||||||||||||||| ||| ||||| || || || | | || ||||||| |||
Sbjct 59 ATGTGGAAGTTGAAGATAGGAAAGGGAAATGGTGAGGAACCGC-ATTTATTCAGTAGCAA 117
Query 60 CAACTTCCTCGGAAGACAGACATGGGAGTTTGATC-CGGACGCCGGCACAGTGGAGGAAC 118
|| ||| ||||| | || |||||||||||||||| | | |||||| || ||||||
Sbjct 118 TAATTTCGTCGGACGTCAAACATGGGAGTTTGATCAC-CAAGCCGGCTCACCAGAGGAAA 176
Query 119 TAGCTGCCGTCGAAGAAGCTCGTCGGAAATTT-TATGAT-GATCGTTTTCGTGTTAAAGC 176
|||| |||||||||||||||| | ||| ||| | |||| | |||| |||||||||||
Sbjct 177 GAGCTTCCGTCGAAGAAGCTCG-CCGAAGTTTCT-TGATCAACCGTTCTCGTGTTAAAGG 234
Query 177 TAGCAGCGATCTCATATGGCGTATGCAGTTTTTAAAG-GAGAAGAAATTCGAGCAAGTTA 235
| |||| |||||| ||||||| ||||| ||| | ||| |||||||||||||| |||| |
Sbjct 235 TTGCAGTGATCTCTTATGGCGAATGCAATTTCT-AAGAGAGAAGAAATTCGAACAAGGCA 293
Query 236 TACC---TCCGGCGAAGGTTGAAGATGCCAATAATATCACG-AGCGAAATAGCTACAAAT 291
|||| || | || | || | | | || || ||| | |||| | | ||||||
Sbjct 294 TACCGAAACCTACTAA-AAT-AA-A-G-GAGGAA-ATAACGTA-TGAAACAACGACAAAT 346
Query 292 GCGTTAAGGAA-AGGGGTTAATTTCTTATCAGCATTGCAGGCCAGTGATGGCCATTGGCC 350
|| || | ||| ||| ||| || ||| ||||| ||||| ||| || |||||||||||
Sbjct 347 GCATT-ACGAAGAGGCGTTCGTTACTTCTCAGCTTTGCAAGCCTCCGACGGCCATTGGCC 405
Query 351 TGCTGA-AAAT-GCTGGTCC-TTTATTCTTCCTTCCTCCAT-TGGT-TTTCTGTCTATAC 405
|| || |||| ||||||| || |||||||||||||| | | | ||| ||| | |||
Sbjct 406 TG--GAGAAATCACTGGTCCGCTT-TTCTTCCTTCCTCC-TCTCATATTT-TGTTTGTAC 460
Query 406 GTCACTGGACATCTCCATG-AGATTTTC-ACT-CAAGACCATCGTC-GAGAGGTCCTTA- 460
| || |||||||| | | || | ||| | | | || ||||| | |||| | | ||
Sbjct 461 ATTACCGGACATCTGGAGGAAG-TATTCGA-TGC-TGAACATCG-CAAAGAGATGC-TAC 515
Query 461 GATACATCTACTGTCACCAGAATGAAGATGGTGGGTGGGGATTACACATAGAAGGAAACA 520
| | ||||| ||||| ||||| ||||||||||| ||||||| ||| || ||| | || |
Sbjct 516 GGCATATCTATTGTCATCAGAACGAAGATGGTGGATGGGGATCACATATCGAAAGCAAGA 575
Query 521 GCACCATGTTCTGCACCACACTAAACTACATTTGCATGCGCATACTTGGAGAAGGTCCAA 580
| |||||||||||| | || ||||| || | || || ||||||||| |||
Sbjct 576 GTGTTATGTTCTGCACCGTGTTGAATTACATATGTTTTCGTATGCTTGGAGAAAATCC-- 633
Query 581 ATGGAGGACCAGGAAACGCGTGCAAACGGGCCAGGGATTGGATTCTTGACCATGGTGGTG 640
| || | || | ||||||||||||| || || | ||||||||||||| ||||||||
Sbjct 634 -T-GA--A-CA--AGACGCGTGCAAACGAGCTAGACAATGGATTCTTGACCGTGGTGGTG 686
Query 641 CAACATACATACCTTCTTGGGGCAAAACTTGGCTTTCGATACTTGGTGTCTT-TGATTGG 699
| | || ||||||||||| ||| |||||| |||||||| || || || ||| |||
Sbjct 687 TGATTTTTATTCCTTCTTGGGGGAAATTTTGGCTCTCGATACTCGGAGT-TTATGAATGG 745
Query 700 TCAGGAAGC-AACCCCATGCCTCCAG-AGTTTTGGATCCTACCTTCCTTTCTTCCAATAC 757
|| |||| | || || | ||| |||| | | || ||| || ||||| |||||||||||||
Sbjct 746 TCTGGAA-CTAATCCGACGCCACCAGAAATCTT-GATGCTGCCTTCTTTTCTTCCAATAC 803
Query 758 AT-C-----C-AG---C--GA-AAATGTGGTGTTACT-GCCGGTTGGTTTA-CATGCCAA 802
|| | | || | || || | | |||||| | ||||| ||| ||| || || |
Sbjct 804 ATCCTGATTCAAGATACTGGAGAACT-TTGTGTTA-TAGCCGGATGG-TTAGTATACCTA 860
Query 803 TGTCTTATCTTTACGGGAAGAGATTCGTTGGTCCAATAAGTCCTCTTATTCTGCAAC-TA 861
||||||| || || |||||||| || ||||||||||||| ||||||||| ||| | |
Sbjct 861 TGTCTTACCTATATGGGAAGAGGTTTGTTGGTCCAATAACACCTCTTATTTTGC-TCTTG 919
Query 862 CGCGAAGAAATTTACTTGCAGCCTTATGCGA-AAATAAACTGGAATAGAGCTCGCCATCT 920
|||| ||| |||||||| | |||||| | |||| | ||||||| | |||| | |||
Sbjct 920 CGCGGGGAACTTTACTTGGAATCTTATG-AAGAAATCAGTTGGAATAAAACTCGACGTCT 978
Query 921 ATGTGCAAAGGAAGATGCGTACTGTCCTCATCCACAAATTCAAGATGTT-ATAT-GGA-A 977
|| |||||| ||||| ||| | ||||||||| |||||||| || |||| || |
Sbjct 979 ATATGCAAAAGAAGACATGTATTATCCTCATCCTTTGGTTCAAGAT-TTGATATCTGACA 1037
Query 978 CTGCCTTTACATCTTCACCGAACCGTTTCTTGCATGTTGGCCATTTAACAAGC-TGCTAA 1036
|| ||| ||| ||| || || |||||| || |||||||||| ||||||| || | |
Sbjct 1038 CT--CTTCACAACTTTGTGGAGCCTTTTCTTACACGTTGGCCATTGAACAAGCTTG-TGA 1094
Query 1037 GGGAAAAAGCTCTTGGGGTGGCAATGAAACACATACATTATGAAGACGAAAATAGCCGTT 1096
|||||||||||||| | || | |||||||||||||||||||||||||||||||||| ||
Sbjct 1095 GGGAAAAAGCTCTTCAGCTGACTATGAAACACATACATTATGAAGACGAAAATAGCCATT 1154
Query 1097 ATATTACCATTGGATGTGTTGAAAAGGCATTATGCATGCTTGCGTGTTGGGTTGAAGACC 1156
| || |||||||||||||| | | | |||||||| || |||||||| ||| | |
Sbjct 1155 ACATAACCATTGGATGTGT--A-----C-TG-TGCATGCTAGCTTGTTGGGTCGAAAATC 1205
Query 1157 CTAACGGA-ATTCATTTCAAAAAGCATCTTT-TGAGGATTTCTGATTACTTGTGGATTGC 1214
|||| ||| | | | ||||| |||||||| | || ||| | |||||| ||||| | ||
Sbjct 1206 CTAATGGAGACT-ACTTCAAGAAGCATCTGGCT-AGAATTCCAGATTACATGTGGGTCGC 1263
Query 1215 AGAAGATGGGATGAAAATGCAGAGCTTTGGAAGTCAATTATGGGATTCGGGGTTTGCCCT 1274
|||||||| ||||||||||||||||||||| ||||| | |||||| | || ||||| |
Sbjct 1264 TGAAGATGGAATGAAAATGCAGAGCTTTGGATGTCAACTGTGGGATACCGGATTTGCTAT 1323
Query 1275 CCAAGCGTTAGTTGCAAGTAATCTCG-TGAACGAAATCCCA-GATGTACTCAGGAGAGGA 1332
||||| ||| |||||||||||||| ||| |||| | | |||| | | |||||||||
Sbjct 1324 TCAAGCTTTACTTGCAAGTAATCTCCCTGAT-GAAA-CTGATGATGCATTAAGGAGAGGA 1381
Query 1333 TATGACTTTT-TGAAAA-ATTCTCAGGTTAGAGAGAACCCTTCGGGTGACTTTACAAA-C 1389
|| | || | || | || ||||||||||||| |||||||| ||||| |||| | | |
Sbjct 1382 CATAA-TTACATCAAGACAT-CTCAGGTTAGAGAAAACCCTTCAGGTGATTTTA-AGAGC 1438
Query 1390 ATGTACCGTCACATATCCAAAGG-GTCGTGGAC-TTTCTCTGATCGAGATCATGGATGGC 1447
|||||||| ||||| || ||||| | | ||||| ||| ||||||||||||||||||||||
Sbjct 1439 ATGTACCGCCACATTTCGAAAGGAG-CATGGACATTT-TCTGATCGAGATCATGGATGGC 1496
Query 1448 AAGCTTCCGACTGCACAGCCGAAAG-TTTCAAGTGTTGCCTG-TTGCTTTCAATGATACC 1505
||| ||| || || ||||| ||| | ||| ||||||||||| || ||||| ||||| ||
Sbjct 1497 AAGTTTCAGATTGTACAGCTGAA-GCTTTAAAGTGTTGCCTACTT-CTTTCCATGATGCC 1554
Query 1506 ACCTGACATTGTTGGCCCGAAAATGGATCCCGAACAGTTATATGAGGCTGTTACTATCTT 1565
| |||| || ||||||| || ||| ||| ||||| |||||||| |||||| | ||||
Sbjct 1555 AGCTGATATCGTTGGCCAGATAATAGATGATGAACAATTATATGATTCTGTTAATCTCTT 1614
Query 1566 ACTGTCTCTACAGAGTAAAAATGGAGGTGT-AACTGCTTGGGAGCCTGCCCGTGGACAAG 1624
|| ||| ||||||| |||||||||||| || ||| ||||||||| |||||| | | |
Sbjct 1615 GCTATCTTTACAGAGCGGAAATGGAGGTGTCAA-TGCGTGGGAGCCTACCCGTGCATATG 1673
Query 1625 AATGGTTGGAATTGCTAAACCCTACTGAAGTTTTTG-CTGACATTGTGGTTGAGCACGA- 1682
||||| ||||| |||| || ||||| ||| || || || | | |||| |||| ||
Sbjct 1674 AATGGATGGAACTGCTCAATCCTACAGAA-TTCATGGCTAATACCATGGTCGAGCG-GAA 1731
Query 1683 GTACAATG-AGTGTACTTCATCAGCGATCCAAGCT-TTGATTCT-TTTCAAGCAACTA-T 1738
|| || | || || ||||| | || ||||| ||||| || ||| | | || | |
Sbjct 1732 GTTTG-TGGAATGCACCTCATCTGTTATACAAGCACTTGAT-CTATTT-A-GAAAGTTGT 1787
Query 1739 ATCC-GAATCACAGGACAGAAGAGATCAACACTTCCATCAAGAAAGCCGTGCAATACATA 1797
|||| || |||||||||| |||||||||||| |||||||| ||||| ||||||| |||
Sbjct 1788 ATCCAGA-TCACAGGACAAAAGAGATCAACAAGTCCATCAAAAAAGCTGTGCAATTTATA 1846
Query 1798 GAGAG-CATACAAAT-GCTTGATGGTTCATGGTACGGAAGCTGGGGAGTTTGCTTCACAT 1855
| || || ||||| || || |||||||||||||||| ||||| |||||||||| |
Sbjct 1847 CA-AGGCAAACAAACAGCA-GACGGTTCATGGTACGGAAATTGGGGTGTTTGCTTCATTT 1904
Query 1856 ACAG-TACATGGTTTGGTCTGGGAGGCCTTGCAGCTGCTGGA-AAGACATACAACAACTG 1913
|| | ||| ||||||| ||| ||||| || ||||| ||||| || || |||||| | ||
Sbjct 1905 AC-GCTACTTGGTTTGCTCTTGGAGGTCTAGCAGCAGCTGGTGAA-ACTTACAACGATTG 1962
Query 1914 CTTGGCTATGCGTAAAGGCGTTCA-TTTCCTT-CTCACAACTCAAAAAGATAATGGAGGT 1971
|| |||||||| ||||| || || ||| || ||||| || |||| |||| ||||||||
Sbjct 1963 TTTAGCTATGCGCAAAGGTGTCCACTTT--TTGCTCACTACACAAAGAGATGATGGAGGT 2020
Query 1972 TGGGGTGAAAGCTACTTGTCATG-TCCTAAAAAGAGATACATTCCAAGT-GAAGGAGAGC 2029
|||||||||||||| || ||||| ||| || | ||||||||| ||| | ||||||||
Sbjct 2021 TGGGGTGAAAGCTATTTATCATGCTCCGAACA-GAGATACATACCAT-TAGAAGGAGAAA 2078
Query 2030 GGTCAAAC-TTGGTGCAAACCTCTTGGGCAATGATGGGTTTACTTCATGCTGGACAGGCC 2088
| |||||| ||| ||||||| || ||||| ||||||| | || ||||| | ||||||||
Sbjct 2079 GATCAAACATTG-TGCAAACATCATGGGCTATGATGGCTCTAATTCATACGGGACAGGCT 2137
Query 2089 GAGCGAGATCCG-TCTCCTCTTCACCGTGCTGC-AAAGCTCTTAATCAACTCTCAACTGG 2146
||| ||||| | | ||||||||| |||||||| ||| || | ||||| || ||||| |
Sbjct 2138 GAGAGAGATTTGAT-TCCTCTTCATCGTGCTGCCAAA-CTAATCATCAATTCACAACTTG 2195
Query 2147 AGAATGGCGATTTTCCTCAGCAGGAGATAACT-GGAGCTTTCATGAAGA-ACTGCTTGTT 2204
| || || ||||||||||| ||||| ||| | ||||| |||||||| | | ||| || |
Sbjct 2196 AAAACGGGGATTTTCCTCAACAGGAAATAG-TAGGAGCGTTCATGAATACA-TGCATGCT 2253
Query 2205 ACACTACGC-AGCATACAGAAACATCTTCCCCGTGTGGGCACTCGC 2249
|||||| || | ||||| |||||| ||||||| | |||||||||||
Sbjct 2254 ACACTATGCTA-CATACCGAAACACCTTCCCCTTATGGGCACTCGC 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86998119580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5