BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78980.1
Length=2491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477067 jgi|Araly1|477067|fgenesh2_kg.2__2197__AT1G78980.1 3530 0.0
> Ahg477067 jgi|Araly1|477067|fgenesh2_kg.2__2197__AT1G78980.1
Length=2371
Score = 3530 bits (1911), Expect = 0.0
Identities = 2163/2283 (95%), Gaps = 24/2283 (1%)
Strand=Plus/Plus
Query 14 CCAAACCTCAACAATGTCTCTATCCCTAAATCCAATCACAATGGCACATTATCTCAAACC 73
||||||||||| ||| ||||||||||||||| | |||| |||||| |||||||||
Sbjct 1 CCAAACCTCAAAAATATCTCTATCCCTAAAT----T--CAAT--CACATTCTCTCAAACC 52
Query 74 CTCGTCGTCTTGTCCGTGAAGCAAACCAAAAAGCACAACACTAACTTTGGAAACCC---A 130
| |||||||||||||||||||||||||| |||||| ||| ||||| || |||||| |
Sbjct 53 CGCGTCGTCTTGTCCGTGAAGCAAACCAGAAAGCATAACCCTAACCCTGAAAACCCTAAA 112
Query 131 -----TTTTCTATCTTTCTTGCAAATCAAGATGACGCAGAAGCTCGTACGCCT-TGTGAT 184
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 113 TCCCTTTTTCTATCTTTCTTGCAAATCAAGATGACGCAGAAGCTCGTAAGCCTCT-TGAT 171
Query 185 CGTCTCTCTGGCTATTACTGTCACTTTACTTCAAGCAAAAACCGATAACCAAGAAGTCTC 244
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 172 CGTCTCTCTGGCTATTATTGTCACTTTAGTTCAAGCAAAAACCGATAACCAAGAAGTCTC 231
Query 245 CGCGTTGAACGTAATGTTCACGAGCTTAAATTCGCCGTCGAAACTCAAAGGTTGGAAAGC 304
|| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 232 CGGGTTGAACGTAATGTTCACGAGCTTAAATTCGCCGTCCAAACTCAAAGGCTGGAAACC 291
Query 305 TAACGGAGGTGATCCCTGCGAAGATTCTTGGGAAGGCGTCAAATGCAAAGGCTCTTCGGT 364
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 292 TAACGGAGGTGATCCCTGCGACGGTTCTTGGGAAGGCGTCAAATGCAAAGGCTCTTCGGT 351
Query 365 CACTGAATTACAGTTATCAGGCTTTGAGCTAGGTGGATCTCGCGGTTATCTACTAAGCAA 424
||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 352 CACCGAATTACAGTTATCCGGCTTTGAGCTAAGTGGATCTCTCGGTTATCTACTAAGCAA 411
Query 425 CCTCAAATCTCTCACAACTTTTGATCTCAGCAAAAACAATCTCAAAGGAAACATACCTTA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CCTCAAATCTCTCACAACTTTTGATCTCAGCAAAAACAATCTCAAAGGAAACATACCTTA 471
Query 485 TCAACTCCCACCCAACATTGCCAATCTAGACTTTTCTGAAAACGAACTCGATGGAAACGT 544
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 472 TCAACTCCCACCCAACATTGTCAATCTAGACTTTTCTGAAAACGAACTCGATGGAAACGT 531
Query 545 GCCCTACTCGTTATCTCAAATGAAAAATCTCCAAAGCATTAATCTTGGACAAAACAAGCT 604
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 GCCCTACTCGTTATCTCAAATGAAAAGTCTCCAAAGCATTAATCTTGGACAAAACAAGCT 591
Query 605 CAATGGAGAACTACCAGATATGTTTCAGAAACTGTCCAAACTCGAAACTCTGGACTTTTC 664
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 592 CAATGGAGAACTACCAGATATGTTTCAGAAACTGTCAAAACTCGTAACTCTGGACTTATC 651
Query 665 GTTGAATAAACTCTCTGGGAAATTACCTCAGAGTTTTGCTAATCTCACAAGCCTCAAAAA 724
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTTGAATCAACTCTCTGGGAAATTACCTCAGAGTTTTGCTAATCTCACAAGCCTCAAAAA 711
Query 725 ACTACACTTGCAGGATAATCGATTCACAGGCGACATAAACGTTCTCAGGAACCTTGCCAT 784
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 ACTACACTTGCAGGAAAATCGATTCACAGGCGACATAAACGTTCTGAGGAACCTTGCCAT 771
Query 785 CGATGACTTGAACGTCGAAGACAACCAGTTTGAAGGATGGATACCTAATGAGCTTAAGGA 844
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 772 TGATGACTTGAACGTTGAAGACAACCAGTTTGAAGGATGGATCCCTAATGAGCTTAAGGA 831
Query 845 CATAGACAGTTTACTGACTGGAGGTAACGACTGGTCAACTGAAACTGCTCCACCACCACC 904
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 832 CATAGACAGTTTACTGACTGGAGGTAACGACTGGTCAACTGAAACTGCACCACCACCACC 891
Query 905 ACCGGGTGTTAAATATGGCCGAAAATCTTCGGGTTCGAAAGACGGAGGAGGTATAACCGC 964
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 892 ACCGGGTGTTAAATATGGCCGAAAATCTTCGGGTTCTAAAGATGGAGGAGGTGTAACCGC 951
Query 965 C-GGAACTGGAATGGTGATCGCTGGAGCATGTTTAGGCGTTCTTGTGTTGATCATTGTTT 1023
| ||||| |||||| |||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 952 CGGGAAC-GGAATGATGATCGCTGGAGCATGTTTAGGAGTTCTTGTGTTGATCGCTGTTT 1010
Query 1024 TAATTGCGCTCGTTTCCAAGAAAAAATCATCTCTCTCACCTCATTTCATCGACGAAGATA 1083
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1011 TAATTGCGCTCGTGTCCAAGAAAAAATCATCTCTCTCACCTCATTTCATCGACGAAGACA 1070
Query 1084 ACAGTCATCACACCCCAAAGTTCAAATCTCTCACCTCGCATGGATCTGCGCAAGAGCTTC 1143
||||||||||||| ||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 1071 ACAGTCATCACACTCCAAAGTTCAAATCTATTACCTCGCATGGATCAGCGCAAGAGCTTC 1130
Query 1144 GTGTTGATTTCGGCAACGATTACAAAGATGGGAAATCTGGAGATTCGGGTGATGAAAATA 1203
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1131 GTGTCGATTTCGGCAACGATTACAAAGATGGGAAATCTGGAGATTCGGATGATGAAAATA 1190
Query 1204 TCCATAGGATAGGATCAAAGGGACTAAAACATTATGTTTCGTCGCGTGTGATGTCTTTCA 1263
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1191 TCCATAGAATAGGATCAAAGGGACTAAAACATTCTGTTTCGTCGCGTGTGATGTCTTTCA 1250
Query 1264 CTGATACCGAATTTGCGAACAAGCTCAATGCAAAACGAACCACTTCAACTCGTTCCGCTG 1323
| ||||||||||| || ||||||||||| || |||||||||||||| ||||||||| |||
Sbjct 1251 CCGATACCGAATTCGCAAACAAGCTCAACGCGAAACGAACCACTTCGACTCGTTCCACTG 1310
Query 1324 TGGAATTCGAGCTCTCTGATTTGCAAAGCGCAACAGCCAATTTCTCACCTGGAAATCTAC 1383
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1311 TGGAATTCGAGCTCTCTGATTTGCAAAGCGCGACAGCCAATTTCTCACCTGGAAATCTAC 1370
Query 1384 TAGGGGAAGGCTCAATCGGACGTGTTTACAGAGCCAAATATTCCGACGGACGTACTTTGG 1443
| || |||||||||||||||||||||||||||||||| |||||||| || || || || |
Sbjct 1371 TCGGTGAAGGCTCAATCGGACGTGTTTACAGAGCCAAGTATTCCGATGGCCGCACATTAG 1430
Query 1444 CGGTTAAGAAGATCGATTCAACGTTGTTTGATTCGGGTAAATCAGAAGGAATAACGCCGA 1503
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1431 CGGTTAAGAAGATCGATTCGACGCTGTTTGATTCGGGTAAATCAGAAGGAATAACGCCGA 1490
Query 1504 TTGTAATGAGCCTCTCAAAGATTAGGCATCAAAATATAGCAGAGCTCGTAGGCTATTGCT 1563
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TTGTAATGAGCGTCTCGAAGATTAGGCATCAAAATATAGCAGAGCTCGTAGGCTATTGCT 1550
Query 1564 CAGAGCAAGGTCACAACATGTTAGTCTACGAATACTTCAGGAATGGCTCACTCCATGAGT 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CAGAGCAAGGTCACAACATGTTAGTCTACGAATACTTCAGGAATGGCTCACTCCATGAGT 1610
Query 1624 TCCTTCATTTGTCAGATTGCTTCAGTAAACCCTTGACTTGGAACACAAGAGTCAGAATCG 1683
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1611 TCCTTCATTTGTCAGATTGCTTCAGTAAACCCTTAACTTGGAACACAAGAGTCAGAATCG 1670
Query 1684 CCTTGGGAACCGCTCGAGCCGTTGAGTACCTGCACGAGGCATGTTCACCTTCTGTGATGC 1743
||||||||||||||||||| || ||||||||||| ||||||||||| || |||| |||||
Sbjct 1671 CCTTGGGAACCGCTCGAGCAGTCGAGTACCTGCATGAGGCATGTTCGCCGTCTGAGATGC 1730
Query 1744 ATAAGAATATCAAGTCTTCTAACATTTTGCTAGACGCAGATCTCAACCCTCGTCTCTCAG 1803
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1731 ATAAGAACATCAAGTCTTCTAACATTTTGCTAGACGCGGATCTCAACCCTCGTCTCTCAG 1790
Query 1804 ATTACGGCCTCTCAAAATTCTACCTTAGAACGAGTCAAAATCTAGGAGAAGGATACAATG 1863
|||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1791 ATTATGGCCTCTCAAAATTCTATCTTAGAACGAGTCAAAACCTAGGGGAAGGATACAATG 1850
Query 1864 CACCAGAAGCCAGGGACCCTTCTGCTTATACACCAAAGAGTGACGTCTACAGCTTTGGCG 1923
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CACCAGAAGCCAAGAACCCTTCTGCTTATACACCAAAGAGTGACGTCTACAGCTTTGGCG 1910
Query 1924 TCGTCATGTTAGAGCTTCTCACCGGTCGAGTTCCATTTGACGGAGAGAAGCCAAGGCCGG 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 TCGTCATGTTAGAGCTTCTCACCGGTCGAGTTCCATTTGACGGAGAGAAGCCAAGGCCGG 1970
Query 1984 AGAGATCGTTGGTACGGTGGGCGACACCACAACTTCACGACATAGATGCATTGTCGAATA 2043
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1971 AGAGATCGTTGGTACGGTGGGCGACACCACAACTTCACGACATTGATGCATTGTCGAATA 2030
Query 2044 TAGCGGATCCAGCTCTGCACGGACTTTACCCACCAAAATCATTGTCAAGATTCGCCGACA 2103
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 TAGCGGATCCAGCTTTGCACGGACTTTACCCACCAAAATCATTGTCAAGATTCGCCGACA 2090
Query 2104 TTATCGCATTATGTGTTCAGGTGGAACCGGAGTTCCGACCACCGATGTCAGAAGTTGTGG 2163
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2091 TTATCGCATTATGTGTACAGGTGGAACCAGAGTTCCGACCACCGATGTCGGAAGTTGTGG 2150
Query 2164 AGGCGCTTGTACGGATGGTTCAACGGTCAAGTATGAAGCTTAAAGATGATCTTTCATCGT 2223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 AGGCGCTTGTACGGATGGTTCAACGGTCAAGTATGAAGCTTAAAGATGATCTTTCATCGT 2210
Query 2224 CTTATCGAGCCCACGACGATTATGATTACTAGAGT--TAA-GAAGAAAGAGTAGTGACAT 2280
||||||||||||||||||| ||||||||||||||| | | | ||||| ||||||||||
Sbjct 2211 CTTATCGAGCCCACGACGAATATGATTACTAGAGTAGTTATGGAGAAA-AGTAGTGACAA 2269
Query 2281 TAT 2283
|||
Sbjct 2270 TAT 2272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93892453925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5