BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78990.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316796 jgi|Araly1|316796|fgenesh1_pm.C_scaffold_2001829 2100 0.0
> Ahg316796 jgi|Araly1|316796|fgenesh1_pm.C_scaffold_2001829
Length=1719
Score = 2100 bits (1137), Expect = 0.0
Identities = 1291/1368 (94%), Gaps = 0/1368 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGAAGCGGCGGAGCAAGCACGTGGCTTCCACGTGACCACCACCAGGAAGCAAGTC 60
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 352 ATGGGAGAAGCGGCGGAGCAAGCACGTGGCTTCCACATGACCACCACTAGGAAGCAAGTC 411
Query 61 ATCACGGCGGCTCTTCCCCTCCAGGACCACTGGCTCCCACTCTCGAACCTCGACCTCCTC 120
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 412 ATCACGGCGGCTCTTCCTCTCCAGGACCACTGGCTCCCTCTCTCGAACCTCGACCTCCTC 471
Query 121 CTTCCTCCTCTCAACGTTCACGTTTGCTTTTGCTACAAGAAACCACTTCACTTTACCAAC 180
|||||||||||| ||||| |||||||||| |||||||||||||||||| || ||||||||
Sbjct 472 CTTCCTCCTCTCGACGTTAACGTTTGCTTCTGCTACAAGAAACCACTTAACATTACCAAC 531
Query 181 ACAGTGGCTTATGAAACCCTCAAGACTGCTTTGGCAGAGACTCTCGTCTCCTACTACGCC 240
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 ACAGTGGCTCATGAAACCCTCAAGACGGCTTTGGCAGAGACTCTCGTCTCCTACTACGCC 591
Query 241 TTTGCCGGCGAGCTCGTCACCAATCCTACCGGAGAACCGGAGATCCTCTGCAACAACCGT 300
|||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 592 TTTGCCGGTGAGGTCGTCACCAATCCTACCGGAGAACCGGAGATTCTCTGCAACAATCGT 651
Query 301 GGCGTAGATTTCGTGGAAGCCGGTGCTGACGTGGAGCTCCGAGAGCTTAACCTGTATGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GGCGTAGATTTCGTGGAAGCCGGTGCTGACGTGGAGCTCCGAGAGCTTAACCTGTATGAT 711
Query 361 CCTGATGAAAGTATTGCCAAGCTAGTCCCCATCAAGAAACATGGAGTCATAGCGATACAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CCTGATGAAAGTATTGCCAAGCTAGTCCCCATCAAGAAACATGGAGTCATAGCGATACAG 771
Query 421 GTGACTCAACTGAAATGTGGGAGCATAGTTGTAGGCTGCACATTTGATCATCGTGTAGCG 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 772 GTGACTCAACTGAAATGTGGGAGCATAGTTGTTGGCTGCACATTTGATCATCGTGTAGCG 831
Query 481 GACGCGTATTCCATGAACATGTTCCTCTTATCGTGGGCCGAGATCTCACGATCAGATGTA 540
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |
Sbjct 832 GACGCGTATTCCATGAACATGTTCCTCTTATCTTGGGCCGAGATCGCACGATCCGATGGA 891
Query 541 CCAATCTCTTGTGTACCATCTTTTCGAAGATCTTTGCTAAACCCACGACGACCATTGGTC 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 892 CCAATCTCTTGTGTACCATCTTTCCGAAGATCTTTGCTAAACCCACGACGACCATTGATC 951
Query 601 ATGGATCCATCTATAGACCAGATTTATATGCCTGTCACGTCCTTGCCCCCTCCACAGGAA 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 952 GTGGATTCATCTATAGACCAGATTTATATGCCTGTCACGTCCTTGCCCCCTCCACAAGAA 1011
Query 661 ACCACCAATCCAGAAAATCTCCTTGCTAGCCGTATCTATTACATCAAAGCAAACGCATTA 720
|||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||
Sbjct 1012 ACCACCAATCCAGAAAATCTCCTTGCGAGCCGCATCTATTACATCAAAGCGGATGCATTA 1071
Query 721 CAAGAGCTCCAAACTCTAGCCAGCAGTTCGAAGAACGGTAAAAGGACAAAACTTGAATCA 780
|||| |||||||||||||||||||| || |||||| |||||||||| ||||| |||||
Sbjct 1072 GAAGAACTCCAAACTCTAGCCAGCAGCTCAAAGAACAGTAAAAGGACGAAACTCGAATCG 1131
Query 781 TTCAGCGCGTTTCTATGGAAACTCGTGGCAGAACACGCTGCAAAAGATCCAGTCCCGATC 840
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 1132 TTTAGCGCGTTTCTGTGGAAGCTCGTGGCAGAACACGCTGCAAAAGATCCAGTCCCAAGC 1191
Query 841 AAGACCTCGAAACTCGGGATCGTTGTGGATGGAAGGAGGAGACTTATGGAGAAAGAAAAC 900
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 1192 AAGACCTCGAAACTCGGGATCGTCGTGGACGGAAGGAGGAGACTTATGGAGCAAGAAAAC 1251
Query 901 AATACTTACTTCGGAAACGTTCTCTCAGTCCCATTTGGTGGGCAGAGAATCGATGACTTG 960
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1252 AAGACTTACTTCGGAAACGTTCTCTCAATCCCATTTGGTGGGCAGAGAATCGATGACTTG 1311
Query 961 ATCAGCAAGCCACTATCTTGGGTGACCGAAGAGGTTCACAGATTCTTGAAGAAATCAGTG 1020
|||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 1312 ATCAGCAAACCACTGTCTTGGGTGACTGAAGAGGTTCACAGATTCTTGGAGAGATCAGTA 1371
Query 1021 ACCAAAGAACATTTCTTGAATTTGATCGATTGGGTTGAGACTTGCCGACCAACACCTGCG 1080
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 1372 ACCAAAGAACATTTCTTGAATTTGATCGATTGGGTTGAGACTCGCCGTCCAACACCCGCG 1431
Query 1081 GTTTCAAGAATCTACAGCGTCGGATCCGACGATGGACCTGCGTTTGTGGTTTCTTCCGGA 1140
||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| ||
Sbjct 1432 GTTTCAAGAATCTACGGCGACGGATCCGACAATGGACCCGCGTTTGTGGTTTCTTCTGGG 1491
Query 1141 AGGAGTTTTCCAGTGAACCAAGTGGATTTCGGGTGGGGCTCACCGGTTTTCGGATCTTAC 1200
|| |||||||| |||| ||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1492 AGAAGTTTTCCGGTGACCCAAGTGGATTTCGGGTGGGGCTCACCAGTTTTCGGAACTTAC 1551
Query 1201 CATTTCCCATGGGGAGGCAGCGCCGGATACGTTATGCCGATGCCCAGTTCAGTGGACGAC 1260
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||
Sbjct 1552 CATTTCCCATGGGGAGGCAGCGCCGGATACGTTATGCCAATGCCGAGCGCAGTGGAAGAT 1611
Query 1261 AGAGATTGGATGGTTTACTTGCACCTTACGAAAGGACAGTTGAGGTTCATTGAGGAAGAG 1320
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1612 GGAGATTGGATGGTTTACTTGCTCCTTACGAAAGGACAGTTGAAGTTCATTGAGGAAGAG 1671
Query 1321 GCTTCTCATGTGCTTAAACCTATTGACAATGATTATCTCAAGATTTGA 1368
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GCTTCTCATGTGCTTAAACCTATTGACAATGATTATCTCAAGATTTGA 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5