BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79010.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927319 jgi|Araly1|927319|scaffold_202880.1 1164 0.0
Ahg471866 jgi|Araly1|471866|fgenesh2_kg.1__1820__AT1G16700.1 931 0.0
> Ahg927319 jgi|Araly1|927319|scaffold_202880.1
Length=712
Score = 1164 bits (630), Expect = 0.0
Identities = 668/687 (97%), Gaps = 0/687 (0%)
Strand=Plus/Plus
Query 92 ATCAATGGCTTCGATTTTGGCTCGCAGGTCACTGAATACTCTCCGTGCTCGACATCTCGT 151
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 18 ATCAATGGCGTCGATTTTGGCTCGCAGGTCACTGAATACTCTACGTGCTCGACATCTCGT 77
Query 152 TTTGTCAGGGCAAGCTTTACAGGGATCTCATCTGTCTAGACTGCAGTCCCGTGGTATATC 211
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 78 TTTTTCAGGGCAAGCTTTGCAGGGATCTCATCTTTCTAGACTGCAGTCCCGTGGTATATC 137
Query 212 TTATGGCAGCAACAAAGATGATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGA 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 TTATGGCAGCAACAAAGATGATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGA 197
Query 272 CTGGAATACTGTCTTTGAACGGAGCATAAACACCCTGTTCCTCACAGAAATGGTCCGCGG 331
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 198 CTGGAATACTGTCTTTGAACGGAGCATAAACACCCTCTTTCTCACTGAAATGGTCCGCGG 257
Query 332 TTTGTCGCTGACCCTCAAGTACTTCTTTGATCCAAAAGTTACTATCAATTATCCATTTGA 391
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 258 TTTGTCGCTGACCCTCAAGTACTTCTTTGATCCCAAAGTTACTATCAATTATCCATTTGA 317
Query 392 GAAGGGTCCTCTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGAAGATATCCTACCGG 451
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 318 GAAGGGTCCACTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGCAGATATCCTACCGG 377
Query 452 GGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCAC 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCAC 437
Query 512 AATAGAGGCAGAAGAGAGGGAAGATGGAAGCCGCAGAACCACTAGGTACGATATCGACAT 571
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 438 AATAGAGGCAGAGGAGAGGGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACAT 497
Query 572 GACAAAATGCATCTACTGTGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTTGA 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 498 GACAAAATGCATCTACTGTGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTCGA 557
Query 632 AGGACCTAACTTTGAATTCGCAACCGAGACACACGAGGAACTTCTCTATGACAAAGAGAA 691
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 558 AGGACCTAACTTTGAATTCGCAACTGAGACACACGAGGAACTTCTCTATGACAAAGAAAA 617
Query 692 GCTTCTTGAGAATGGAGATCGATGGGAGACAGAGATTGCTGAGAATCTGAGGTCGGAGAG 751
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 618 GCTTCTTGAGAATGGAGATCGATGGGAGACTGAGATCGCTGAGAATCTGAGGTCGGAGAG 677
Query 752 TCTCTACCGCTGAACCATTCTACAACA 778
||||||||||||||||||| |||||||
Sbjct 678 TCTCTACCGCTGAACCATTATACAACA 704
> Ahg471866 jgi|Araly1|471866|fgenesh2_kg.1__1820__AT1G16700.1
Length=1004
Score = 931 bits (504), Expect = 0.0
Identities = 647/716 (90%), Gaps = 10/716 (1%)
Strand=Plus/Plus
Query 54 GAAGAAGGAAGGAACCTAAATCGGAAT-TTGGGTGCTCCATCAATGGCTTCGATT-TTGG 111
|||||| ||| | ||| |||| | || || || | || ||| ||||||||| || |||
Sbjct 110 GAAGAA-GAAAG-ACCCAAATTTG-ATATTCGGAGTTCTATCGATGGCTTCG-TTACTGG 165
Query 112 CTCGCAGGTCACTGAATACTCTCCGTGCTCGACATCTCG-TTTTGTCAGGGCAAGCTTTA 170
|||||||||| | | | ||||||| |||||||| |||| |||| |||||||||| ||||
Sbjct 166 CTCGCAGGTCGTTCAGTGCTCTCCGAGCTCGACAACTCGCTTTT-TCAGGGCAAGGTTTA 224
Query 171 CAGGGATCTCATCTGTCTAGACTGCAGTCCCGTGGTATATCTTATGGCAGCAACAAAGAT 230
|||||||||||||| | | | || |||||||||| |||||||||||| ||||||||||||
Sbjct 225 CAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATCTTATGGAAGCAACAAAGAT 284
Query 231 GATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGACTGGAATACTGTCTTTGAA 290
||||||||||| ||||| ||| |||| || |||||||||||||||| |||||||||||||
Sbjct 285 GATGAAGAAGCTGAGCAGCTTGCTAAAGAGATCTCCAAGGACTGGAGTACTGTCTTTGAA 344
Query 291 CGGAGCATAAACACCCTGTTCCTCACAGAAATGGTCCGCGGTTTGTCGCTGACCCTCAAG 350
|||||||| |||||||| || ||||| ||||||||| | |||||||||||||||||||||
Sbjct 345 CGGAGCATGAACACCCTATTTCTCACTGAAATGGTCAGGGGTTTGTCGCTGACCCTCAAG 404
Query 351 TACTTCTTTGATCCAAAAGTTACTATCAATTATCCATTTGAGAAGGGTCC-TCTGAGCCC 409
||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||
Sbjct 405 TACTTCTTTGATCCAAAAGTTACAATCAATTATCCTTTTGAGAAGGGTCCAT-TGAGCCC 463
Query 410 TCGCTTCCGTGGTGAACATGCTCTTCGAAGATATCCTACCGGGGAAGAACGCTGCATTGC 469
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 464 TCGCTTCCGTGGTGAACATGCTCTTCGAAGGTATCCAACTGGGGAAGAACGCTGCATTGC 523
Query 470 CTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAAGAGAG 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 524 CTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAGGAGCG 583
Query 530 GGAAGATGGAAGCCGCAGAACCACTAGGTACGATATCGACATGACAAAATGCATCTACTG 589
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 584 GGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACATGACAAAGTGCATCTACTG 643
Query 590 TGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTTGAAGGACCTAACTTTGAATT 649
|||||||||||||||||||||||| ||||||||||| || |||||||| |||||||| ||
Sbjct 644 TGGTTTCTGCCAAGAAGCTTGCCCTGTTGATGCAATTGTCGAAGGACCAAACTTTGAGTT 703
Query 650 CGCAACCGAGACACACGAGGAACTTCTCTATGACAAAGAGAAGCTTCTTGAGAATGGAGA 709
||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 704 TGCAACTGAGACACATGAGGAACTTCTGTATGACAAAGAGAAGCTTCTTGAGAATGGAGA 763
Query 710 TCGATGGGAGACAGAGATTGCTGAGAATCTGAGGTCGGAGAGTCTCTACCGCTGAA 765
| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 764 TAGGTGGGAGACAGAGATTGCAGAGAATCTGAGGTCGGAGAGCCTCTACCGCTGAA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5