BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G79020.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477071 jgi|Araly1|477071|fgenesh2_kg.2__2201__AT1G79020.1 2263 0.0
Ahg471865 jgi|Araly1|471865|fgenesh2_kg.1__1819__AT1G16690.1 981 0.0
> Ahg477071 jgi|Araly1|477071|fgenesh2_kg.2__2201__AT1G79020.1
Length=1611
Score = 2263 bits (1225), Expect = 0.0
Identities = 1409/1495 (94%), Gaps = 23/1495 (2%)
Strand=Plus/Plus
Query 337 CACACTTGTAAGTAGAATAGTGAGGAAGAAGGTAATATGAGTAGGCTCTCTTTCCGGCCA 396
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 136 CACACTTGTAAGTAGAATAGTGAGGAAGAAGGTGATATGAGTAGGCTCTCTTTCCGGCCA 195
Query 397 CGGCCATTAGACATTCATAAGAAGCTTCCCATTTTAAAATCCTTTAAAGACTTTGAAGAT 456
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 196 CGGCCATTGGACATTCATAAGAAGCTTCCCATTTTAAAATCGTTTAAAGACTTTGAAGAC 255
Query 457 GATGAGACTCCAACTTCTACCACTAGAAATTCTCAGTTGCTGCGTATTGCTTCCGTAGAA 516
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 256 GATGAGACACCAACTTCTACCACTAGAAATTCTCAGTTGCTTCGTATAGCTTCCGTCGAG 315
Query 517 GTTGACAATGAGGTGGCTCCAGTGCCAAGTAAGAAACCGGCTTCAGAAATACCAACACCT 576
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 316 GTTGACAATGAGGTGGCTCCAGTGCCAAGCAAGAAACCGGCTTCAGAAATACCAACACCT 375
Query 577 CAATTTGTTATTGTGGATACATATGAAAGGGATTATTCTCCGACTTTTGGTCAGCCTGCT 636
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 376 CAATTTGTTATTGTGGATACATATGAAAGGGATTATTCTCCTACTTTTGGTCAGCCTGCT 435
Query 637 TCTTATCTACGTGCAAGAGGAGCTCGGTCTGAGCTTGGAGAATTTGTGGAGTATGATCTT 696
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TCTTATCTACGAGCAAGAGGAGCTCGGTCTGAGCTTGGAGAATTTGTGGAGTATGATCTT 495
Query 697 GACAATGAGGATGAAGACTGGCTTTATGAGTTTGATAAGGATAAGAAAGAACTTCCACCT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GACAATGAGGATGAAGACTGGCTTTATGAGTTTGATAAGGATAAGAAAGAACTTCCACCT 555
Query 757 GAAAAGCTTGAGATCATCATTTTTAAACTAGAGGTGTTGGATCACAAGACGCGGGAAAGA 816
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GAAAAGCTTGAGAGCGTTATTTTTAAACTAGAGGTGTTGGATCACAAGACGCGGGAAAGA 615
Query 817 GCAGGAGTTATTACACCTACTCTCGGCTCTCCAGTTCCTGTGCTTTTGCAGTTTGATGCT 876
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 616 GCTGGAGTTATTACACCTACTCTCGGTTCTCCGGTTCCTGTGCTTTTGCAGTTTGATGCT 675
Query 877 GCTTCTGATGTGCTGCAAGTACTGTCCATTAATTATGGAACCTTCCAGGCGATCTTCAAC 936
||| ||| || ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 676 GCTGCTGCTGCACTGCATTTACTGTCCATTAATTATGGAATCTTCCAGGCGATCTTCAAC 735
Query 937 TACTGGAAAGAAAAGCGTAAAAGATGGCAGAAGCCTATCTTACGGCGTTTACAGCCTCCC 996
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 736 TACTGGAAAGAAAAGCGCAAAAGATGGCAGAAGCCTATCTTGCGGCGCTTACAGCCTCCC 795
Query 997 CCACCGGTTAATGACACCAATCCCTATAATGTGTTTAGGCCAAGGGAGAAAGTTCACAGA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CCACCGGTTAATGACACCAATCCCTATAATGTGTTTAGGCCAAGGGAGAAAGTTCACAGA 855
Query 1057 CTCCACACAAGAAGGATGCAGAGGAGAGAAAACAATGTGCAGTCATTTGAAAAGCTTCGA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CTCCACACAAGAAGGATGCAGAGGAGAGAAAACAATGTGCAGTCATTTGAAAAGCTTCGA 915
Query 1117 CAGGTTAGACGCAATCTAGGCCAAGCACAGAGCATTCTGGAGGCTCTCATTaagagagaa 1176
|||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 916 CAGGTTAGACGCAACCTAGGGCAAGCACAGACCATTCTGGAGGCTCTCATTAAGAGAGAA 975
Query 1177 gagaagaagagGGATGTCATGGACAGTGAGGTTAGCCTTCAGAGAATCCAACTCCAATAC 1236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 976 GAGAAGAAGAGGGATGTCATGGACAGTGAGGTTAGCCTCCAGAGAATCCAACTCCAATAC 1035
Query 1237 AGGCATGAAACAGAGCTCTTGGAAGATAGCTTGGCTATGCCTGGATTTCAACCCACTACA 1296
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1036 AGGCATGAAACAGAGCTCTTGGAAGATAGCTTGGCTCTGCCTGGATTTCCACCCACTACA 1095
Query 1297 ACATCATACAAATTTGGCTCAAGCGATGATGAACTGATGGACTCTGATGATCACACCAGT 1356
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1096 ACATCATACAAATTTGGCTCAAGCGATGATGAACTGATGGACTCAGATGATCACACAAGT 1155
Query 1357 ACTCGTGTACGTACAAGACCTGCGGTTATTCCTAGTTCTCGTTTCACCAACTTAAATCTG 1416
|| |||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 1156 ACCCGTGTACGCACAAGACCTGCCGTTATCCCTAATTCTCGTTTCACCAACTTAAATCTG 1215
Query 1417 AATGCATCTCATCCCGGAGGCATCAAACAAGAAGTTAGAAGACGACAGTCACAGCATGGA 1476
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1216 AATGCATCTCAACCCGGAGGCATCAAACAAGAAGTTAGAAGACGACAGTCGCAGCACGGA 1275
Query 1477 TGGCTTCACAGACTGGATCCTAATGAACCGGTAATGCTATTCACAAAACCGCTGGTTCCC 1536
||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||
Sbjct 1276 TGGCTTCACAGACTGGATCCTAATGAACCAGTCATGCTGTTTACAAAACCGCTGGTTCCC 1335
Query 1537 GATAAACTGGCAGCTGCAGGGATTGTTCCTCCAACACCGGATTCATCACCAGGTCAACCT 1596
||||||||||||||||||||||||||||||||| ||||||||||||| | | |
Sbjct 1336 GATAAACTGGCAGCTGCAGGGATTGTTCCTCCAGCACCGGATTCATC----G--C--C-- 1385
Query 1597 CCAAGTCGGTTTCAGGGGAGGATTGGGCGTGGTGGCCGAATTATTTTCGATAGATGGAAT 1656
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1386 --AAGTCGGTTTCAGGGGAGGATTGGGCGTGGTGGCCGAATAATATTCGATAGATGGAAT 1443
Query 1657 CCGTTGATGCAATCTCACATTAATTGTGGAAACTCTTATTACATTGCTCCAAATCACCGG 1716
|| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1444 CCTTTGATGCAATCTCACATTAACTGCGGAAACTCTTATTACATTGCGCCAAATCACCGA 1503
Query 1717 TCTACCAACTTCGATTGAGATATTTTCACAA-TCTT-GCTTTGTAAAGAATTTTCCATCA 1774
|||||||||||| |||||||||||| ||||| |||| | |||||||||||||| | | |
Sbjct 1504 TCTACCAACTTCAATTGAGATATTT-CACAAATCTTTG-TTTGTAAAGAATTTGCGAA-A 1560
Query 1775 CCAATGGTGTATGCAATAACGATTCTCAGCTAAATAA--GTTTTAGCACTTTGTA 1827
|| | || ||||||||||||||||| |||||| || ||||||||||||||||
Sbjct 1561 --AA-G-TGAATGCAATAACGATTCTCTGCTAAAAAAAAGTTTTAGCACTTTGTA 1611
Score = 141 bits (76), Expect = 2e-32
Identities = 102/114 (89%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 139 AAAAACCCTAACCCTAAAATTCGTGTTCGATTAATTT-C-GTTGTCTCTGTTTTGTTTTC 196
||||||||||||||||||||||||| |||||| ||| | ||| ||||||||||||||||
Sbjct 1 AAAAACCCTAACCCTAAAATTCGTGGTCGATTGCTTTACTGTTCTCTCTGTTTTGTTTTC 60
Query 197 TCTTCGTGTAAACCtttttttttCGAGTTTTGGCACTCTGAGCTATTTGAGTAT 250
||||||||||||| ||||||| |||||||||| | |||||| |||||||||||
Sbjct 61 TCTTCGTGTAAACGTTTTTTT--CGAGTTTTGGGATTCTGAGTTATTTGAGTAT 112
> Ahg471865 jgi|Araly1|471865|fgenesh2_kg.1__1819__AT1G16690.1
Length=1781
Score = 981 bits (531), Expect = 0.0
Identities = 1100/1366 (81%), Gaps = 74/1366 (5%)
Strand=Plus/Plus
Query 373 ATGAGTAGGCTCTCTTTCCGGCCACGGCCATTAGACATTCATAAGAAGCTTCCCATTTTA 432
||||||||||| ||||| || || || ||||| ||||| || ||||||||||| ||||||
Sbjct 364 ATGAGTAGGCTATCTTTTCGACCCCGTCCATTGGACATACACAAGAAGCTTCCAATTTTA 423
Query 433 AAATCCTTTAAAGACTTTGAAGATGATGAGACTCCAACTTCTACCACTAGAAATTCTCAG 492
|| ||||||||||||||||||||||| |||| ||| |||| | |||||||||||||||
Sbjct 424 AAGTCCTTTAAAGACTTTGAAGATGAAGAGAATCCTTCTTCCATTACTAGAAATTCTCAG 483
Query 493 TTGCTGCGTAT-TGCTTCCGTAGA---AGTTGACAATGAGGTG--G-CTCCAGTGCCAAG 545
||||||||||| | | ||||||| ||||||||||||||| | |||||||||| ||
Sbjct 484 TTGCTGCGTATAT-CCGCCGTAGAGGTTGTTGACAATGAGGTGCAGCCTCCAGTGCCTAG 542
Query 546 TAAGAAACCGGCTTCAGAAATACCAACACCTCAATTTGTTATTGTGGATACATATGAAAG 605
|||||||| || ||||||||||||||||||||| | | || |||| ||||||||||||||
Sbjct 543 TAAGAAACTGGTTTCAGAAATACCAACACCTCAGTATCTTGTTGTTGATACATATGAAAG 602
Query 606 GGATTATTCTCCGACTTTTGGTCAGCCTGCTTCTTATCTACGTGCAAGAGGAGCTCGGTC 665
|| || ||| ||||||| ||||||||| || ||| |||| || |||||||||||| |
Sbjct 603 AGACTACTCTAGGACTTTTAATCAGCCTGCCTCGTATTTACGCGCTAGAGGAGCTCGGGC 662
Query 666 TGAGCTTGGAGAATTTGTGGAGTATGATCTTGACAATGAGGATGAAGACTGGCTTTATGA 725
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 663 TGAGCTTGGAGAATTTGTGGAGTATGATCTTGACAATGACGATGATGACTGGCTTTATGA 722
Query 726 GTTTGATAAGGATAAGAAAGAA-CT-TCCACCTGAAAAGCTTGAGATCATCATTTTTAAA 783
|| | ||||||| | || || || || |||||||| |||||||||||| || |||||
Sbjct 723 GTATAATAAGGAGAC-AATGATTCTCTC-ACCTGAAATGCTTGAGATCATTATATTTAAG 780
Query 784 CTAGAGGTGTTGGATCACAAGACGCGGGAAAGAGCAGGAGTTATTACACCTACTCTCGGC 843
|| ||||| |||||||| ||| ||||||||||||| ||||||||||| ||||| || ||
Sbjct 781 CTCGAGGTATTGGATCATAAGGCGCGGGAAAGAGCTGGAGTTATTACTCCTACCCTTGGT 840
Query 844 TCT-CCAGTTCCTGTGCTTTTGCAGTTTGATGCTGCTTCTGATG--T-G-C-T-GCAAGT 896
| | |||||||| |||||||||||| ||||||||||| ||| | | | | | |||| |
Sbjct 841 T-TGCCAGTTCCAGTGCTTTTGCAGCTTGATGCTGCTAGTGAGGCGTTGGCGTTGCAA-T 898
Query 897 ACTGT-CC-ATTAATTATGGAACCTTCCAGGCGATCTTCAACTACTGGAAAGAA-AAGCG 953
|| | || || || |||||| |||||||| || | || || |||||| || |||||
Sbjct 899 -CTTTGCCCATCAAATATGGAGTTTTCCAGGCTATATACAGTTATTGGAAA-AATAAGCG 956
Query 954 TAAAAGATGGCAGAAGCCTATCTTACGGCGTTTACAGCCTCCCCCACCGGTTAATGACAC 1013
| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 957 TGAAAGATGGCAGAAGCCTATCTTGCGGCGTTTACAGCCTCCACCACCGGTCAATGATAC 1016
Query 1014 CAATCCCTATAATGTGTTTAGGCCAAGGGAGAAAGTTCACAGACTCCACACAAGAAGGAT 1073
|||||| || ||||||||||||||| ||||||||| ||| ||||| ||||||||||||||
Sbjct 1017 CAATCCGTACAATGTGTTTAGGCCACGGGAGAAAGCTCATAGACTACACACAAGAAGGAT 1076
Query 1074 GCAGAGGAGAGAAAACAATGTGCAGTCATTTGAAAAGCTTCGACAGGTTAGACGCAATCT 1133
|||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1077 GCAGCGGAGAGAAAACAATGCACAGTCATTTGAAAAGCTTCGACAGGTCAGGCGCAATCT 1136
Query 1134 AGGCCAAGCACAGAGCATTCTGGAGGCTCTCATTaagagagaagagaagaagagGGATGT 1193
| ||||||| ||| |||||| || ||||| ||||||||||||||||| ||||||||| |
Sbjct 1137 TGACCAAGCAAAGACCATTCTAGAAGCTCTTATTAAGAGAGAAGAGAAAAAGAGGGATTT 1196
Query 1194 CATGGAC-AGTGAGGTTAGCCTTCAGAGAATCCAACTCCAATACAGGCATGAAACAGAGC 1252
||||| | |||||||||||||||||||||||||||||| |||| | | ||||||| ||||
Sbjct 1197 CATGG-CGAGTGAGGTTAGCCTTCAGAGAATCCAACTCAAATATAAGAATGAAACCGAGC 1255
Query 1253 TCTTGGAAGATAGCTTGGCTATGCCTGGATTTCAACCCACTACAACATCATACAAATTTG 1312
| ||||||||||| ||||| || |||| |||| || | ||||| | | |||| |||||
Sbjct 1256 TTTTGGAAGATAGTTTGGCGCTGGCTGGGTTTCCACTCTCTACATC-T--TACAGATTTG 1312
Query 1313 GCTCAAGCGATGATGAACTGATGGACTCTGATGATCAC-ACCAGTACTCGTGTACGTACA 1371
|||||||||| |||||| | |||||||| ||||| | | |||| || | | |||||
Sbjct 1313 GCTCAAGCGAAGATGAATTCATGGACTCCGATGACC-CTACCACCACCCAAACATGTACA 1371
Query 1372 AGACCTGCGGTTATTCCT-AGTTCTCGTTTCACCAACTTAAATCT-GAAT-GCATCTCAT 1428
|| ||| | ||| ||| | | ||||||||||| ||| |||||| | | | | ||||
Sbjct 1372 AGGCCTTCCTTTACCCCTCA-TCCTCGTTTCACCGACTCAAATCTCGC-TCG-AGCTCAA 1428
Query 1429 CCCGGAG-GCATCAAA-CAAGAAGTTAGAAGACGACAGTCACAGCATGGATGGCTTCACA 1486
| || | |||| ||| ||||| | | || || || || | || ||||| ||||
Sbjct 1429 GCTGG-GCGCAT-AAAGCAAGA-G---GC-GA-GA-AG--ACT-C--GGTTGGCTCCACA 1474
Query 1487 GACTGGATCCTAATGAACCGGTAATGCTATTCACAAAACCGCTGGTTCCCGATAAACTGG 1546
|||| |||||||||| || || ||||| ||||||||||| ||||| ||||||||| |||
Sbjct 1475 AACTGAATCCTAATGAGCCAGTTATGCTGTTCACAAAACCACTGGTCCCCGATAAAATGG 1534
Query 1547 CAGCTGCAGGGATTGTTCC-TCCAACACCGGATTCATCAC-CAGGTCAACCTCCAAGTCG 1604
| |||| |||| | ||| |||| || | || || | | || || | |||
Sbjct 1535 CTGCTGT-GGGAATCATCCCTCCATCA--G-ATGCAAGAAGC-GG--AAGAGC----TCG 1583
Query 1605 GTTTCAGGGGAGGATTGGGCGTGGTGGCCGAATTAT-TTTCGATAGATGGAATCCGT-TG 1662
|||||| || || ||||| || ||||| || ||| | ||| |||||||||||||| | |
Sbjct 1584 GTTTCAAGGAAGAATTGGTCGAGGTGGTCGGATTGTATTT-GATAGATGGAATCC-TCTA 1641
Query 1663 ATGCAATCTCACATTAATTGTGGAAACTCTTAT-TACATTGCTCCA 1707
| ||| | ||||| || ||||| ||| ||| | ||||| || |||
Sbjct 1642 AACCAAGCCCACATGAACTGTGGGAACACTT-TCTACATAGCACCA 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5